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FastSurfer -- A fast and accurate deep learning based neuroimaging pipeline

NeuroImage (NeuroImage), 2019

9 October 2019

Papers citing "FastSurfer -- A fast and accurate deep learning based neuroimaging pipeline"

50 / 100 papers shown

Title
Not Quite Anything: Overcoming SAMs Limitations for 3D Medical Imaging Keith Moore MedIm 122 0 0 22 Nov 2025
Investigating Demographic Bias in Brain MRI Segmentation: A Comparative Study of Deep-Learning and Non-Deep-Learning Methods Ghazal Danaee Marc Niethammer Jarrett Rushmore Sylvain Bouix 56 0 0 20 Oct 2025
Beyond one-hot encoding? Journey into compact encoding for large multi-class segmentation Aaron Kujawa Thomas C Booth Tom Vercauteren MQ 68 0 0 01 Oct 2025
Template-Based Cortical Surface Reconstruction with Minimal Energy Deformation Patrick Madlindl Fabian Bongratz Christian Wachinger MedIm 60 0 0 18 Sep 2025
PREDICT-GBM: Platform for Robust Evaluation and Development of Individualized Computational Tumor Models in Glioblastoma L. Zimmer J. Weidner M. Balcerak F. Kofler I. Ezhov B. Menze B. Wiestler 43 0 0 15 Sep 2025
Explainable AI for Accelerated Microstructure Imaging: A SHAP-Guided Protocol on the Connectome 2.0 scanner Quentin Uhl Tommaso Pavan Julianna Gerold Kwok-Shing Chan Yohan Jun ... Qiaochu Wang Hong-Hsi Lee Susie Huang B. Bilgiç Ileana Jelescu 48 0 0 11 Sep 2025
Uncertain but Useful: Leveraging CNN Variability into Data Augmentation Inés Gonzalez Pepe Vinuyan Sivakolunthu Yohan Chatelain Tristan Glatard OOD BDL 67 0 0 05 Sep 2025
BrainPath: A Biologically-Informed AI Framework for Individualized Aging Brain Generation Yifan Li Javad Sohankar Ji Luo Jing Li Yi Su MedIm 100 0 0 21 Aug 2025
Subcortical Masks Generation in CT Images via Ensemble-Based Cross-Domain Label TransferAnnual Conference on Medical Image Understanding and Analysis (MIUA), 2025 Augustine X. W. Lee Pak-Hei Yeung Jagath C. Rajapakse OOD 65 0 0 15 Aug 2025
UNISELF: A Unified Network with Instance Normalization and Self-Ensembled Lesion Fusion for Multiple Sclerosis Lesion Segmentation Jinwei Zhang Lianrui Zuo Blake E. Dewey Samuel W. Remedios Yihao Liu ... E. Mowry S. Newsome P. Calabresi A. Carass Jerry L. Prince 122 3 0 06 Aug 2025
Label tree semantic losses for rich multi-class medical image segmentation Junwen Wang O. MacCormac William Rochford Aaron Kujawa J. Shapey Tom Vercauteren 142 0 0 21 Jul 2025
DeepMultiConnectome: Deep Multi-Task Prediction of Structural Connectomes Directly from Diffusion MRI Tractography Marcus J. Vroemen Yuqian Chen Yui Lo Tengfei Xu Weidong Cai Fan Zhang Josien P.W. Pluim L. O’Donnell 206 0 0 27 May 2025
End-to-end Cortical Surface Reconstruction from Clinical Magnetic Resonance Images Jesper Duemose Nielsen Karthik Gopinath Andrew Hoopes Adrian Dalca C. Magdamo S. Arnold Sudeshna Das A. Thielscher Juan Eugenio Iglesias Oula Puonti 120 0 0 20 May 2025
Regression is all you need for medical image translation Sebastian Rassmann David Kügler Christian Ewert Martin Reuter DiffM MedIm 981 0 0 04 May 2025
Benchmarking the Reproducibility of Brain MRI Segmentation Across Scanners and Time Ekaterina Kondrateva Sandzhi Barg Mikhail Vasiliev 113 0 0 22 Apr 2025
Large Scale Supervised Pretraining For Traumatic Brain Injury Segmentation Constantin Ulrich Tassilo Wald Hyunjin Park Klaus H. Maier-Hein 170 0 0 09 Apr 2025
Point Cloud-based Grasping for Soft Hand ExoskeletonIEEE Robotics and Automation Letters (IEEE RA-L), 2025 Chen Hu Enrica Tricomi Eojin Rho Daekyum Kim L. Masia Shan Luo Letizia Gionfrida 130 0 0 04 Apr 2025
Exploring Robustness of Cortical Morphometry in the presence of white matter lesions, using Diffusion Models for Lesion Filling Vinzenz Uhr I. Díaz C. Rummel Richard McKinley MedIm 195 0 0 26 Mar 2025
NimbleReg: A light-weight deep-learning framework for diffeomorphic image registration Antoine Legouhy Ross Callaghan Nolah Mazet Vivien Julienne H. Azadbakht Hui Zhang MedIm 3DH 152 0 0 10 Mar 2025
Tackling Hallucination from Conditional Models for Medical Image Reconstruction with DynamicDPSInternational Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2025 Seunghoi Kim Henry F. J. Tregidgo Matteo Figini Chen Jin Sarang Joshi Daniel C. Alexander MedIm 202 4 0 03 Mar 2025
V2C-Long: Longitudinal Cortex Reconstruction with Spatiotemporal Correspondence Fabian Bongratz Jan Fecht Anne-Marie Rickmann Christian Wachinger 185 1 0 20 Feb 2025
MUSTER: Longitudinal Deformable Registration by Composition of Consecutive Deformations E. Grødem Donatas Sederevičius Esten H. Leonardsen B. MacIntosh A. Bjørnerud Till Schellhorn Øystein Sørensen Inge Amlien Pablo F. Garrido Anders M. Fjell 183 0 0 19 Dec 2024
Deep Nonparametric Conditional Independence Tests for Images Marco Simnacher Xiangnan Xu Hani Park Christoph Lippert Sonja Greven 197 1 0 09 Nov 2024
VoxelPrompt: A Vision Agent for End-to-End Medical Image Analysis Andrew Hoopes Neel Dey V. Butoi John Guttag Adrian V. Dalca MedIm LM&MA 353 3 0 10 Oct 2024
MedSegMamba: 3D CNN-Mamba Hybrid Architecture for Brain Segmentation Aaron Cao Zongyu Li Jia Guo Andrew F. Laine Jia Guo Mamba 219 3 0 12 Sep 2024
DS-ViT: Dual-Stream Vision Transformer for Cross-Task Distillation in Alzheimer's Early Diagnosis Ke Chen Yifeng Wang Yufei Zhou Haohan Wang 96 1 0 11 Sep 2024
DDEvENet: Evidence-based Ensemble Learning for Uncertainty-aware Brain Parcellation Using Diffusion MRI Chenjun Li Dian Yang Shun Yao Shuyue Wang Ye Wu ... C. Westin L. O’Donnell N. Sochen O. Pasternak Fan Zhang UQCV 231 0 0 11 Sep 2024
A Quantitative Approach for Evaluating Disease Focus and Interpretability of Deep Learning Models for Alzheimer's Disease ClassificationIEEE International Conference on Bioinformatics and Biomedicine (BIBM), 2024 Thomas Yu Chow Tam Litian Liang Ke Chen Haohan Wang Wei Wu 106 2 0 07 Sep 2024
Recon-all-clinical: Cortical surface reconstruction and analysis of heterogeneous clinical brain MRI Karthik Gopinath Douglas N. Greve C. Magdamo Steve Arnold Sudeshna Das Oula Puonti Juan Eugenio Iglesias 166 9 0 05 Sep 2024
Advancing Brain Imaging Analysis Step-by-step via Progressive Self-paced Learning Yanwu Yang Hairui Chen Jiesi Hu Xutao Guo Heather Ting Ma 117 2 0 23 Jul 2024
Quantitative Evaluation of the Saliency Map for Alzheimer's Disease Classifier with Anatomical Segmentation Yihan Zhang Xuanshuo Zhang Wei Wu Haohan Wang 173 0 0 11 Jul 2024
POLAFFINI: Efficient feature-based polyaffine initialization for improved non-linear image registration Antoine Legouhy Ross Callaghan H. Azadbakht Hui Zhang 131 3 0 04 Jul 2024
Self-supervised Brain Lesion Generation for Effective Data Augmentation of Medical Images Jiayu Huo Sebastien Ourselin Rachel Sparks MedIm 120 0 0 21 Jun 2024
MAMOC: MRI Motion Correction via Masked Autoencoding Lennart Alexander Van der Goten Jingyu Guo Kevin Smith 124 0 0 23 May 2024
ToNNO: Tomographic Reconstruction of a Neural Network's Output for Weakly Supervised Segmentation of 3D Medical Images Marius Schmidt-Mengin Alexis Benichoux S. Belachew N. Komodakis Nikos Paragios MedIm 171 2 0 19 Apr 2024
Hierarchical storage management in user space for neuroimaging applications Valérie Hayot-Sasson Tristan Glatard 70 0 0 17 Apr 2024
Label merge-and-split: A graph-colouring approach for memory-efficient brain parcellation Aaron Kujawa Reuben Dorent Sebastien Ourselin Tom Vercauteren VLM 230 3 0 16 Apr 2024
Transferring Ultrahigh-Field Representations for Intensity-Guided Brain Segmentation of Low-Field Magnetic Resonance Imaging Kwanseok Oh Jieun Lee Da-Woon Heo Dinggang Shen Heung-Il Suk 106 0 0 13 Feb 2024
Masked LoGoNet: Fast and Accurate 3D Image Analysis for Medical Domain Amin Karimi Monsefi Payam Karisani Mengxi Zhou Stacey S. Choi Nathan Doble Heng Ji Srinivasan Parthasarathy R. Ramnath 232 7 0 09 Feb 2024
Neural deformation fields for template-based reconstruction of cortical surfaces from MRI Fabian Bongratz Anne-Marie Rickmann Christian Wachinger 316 17 0 23 Jan 2024
DeepCERES: A Deep learning method for cerebellar lobule segmentation using ultra-high resolution multimodal MRINeuroImage (NeuroImage), 2024 Sergio Morell-Ortega Marina Ruiz-Perez Marien Gadea Roberto Vivó Hernando Gregorio Rubio F. Aparici-Robles M. Iglesia-Vayá G. Catheline Pierrick Coupé J. V. Manjón 145 8 0 22 Jan 2024
TABSurfer: a Hybrid Deep Learning Architecture for Subcortical Segmentation Aaron Cao Vishwanatha M. Rao Kejia Liu Xinru Liu Andrew F. Laine Jia Guo MedIm 161 1 0 13 Dec 2023
Reconstruction of Cortical Surfaces with Spherical Topology from Infant Brain MRI via Recurrent Deformation Learning Xiaoyang Chen Junjie Zhao Siyuan Liu Sahar Ahmad P. Yap 159 0 0 10 Dec 2023
Quantifying white matter hyperintensity and brain volumes in heterogeneous clinical and low-field portable MRIIEEE International Symposium on Biomedical Imaging (ISBI), 2023 Pablo Laso Stefano Cerri Annabel Sorby-Adams Jennifer Guo F. Mateen ... J. Wolterink Arman Eshaghi F. Barkhof W. T. Kimberly J. Iglesias 150 26 0 08 Dec 2023
MEDPSeg: Hierarchical polymorphic multitask learning for the segmentation of ground-glass opacities, consolidation, and pulmonary structures on computed tomography Diedre S. Carmo Jean Ribeiro A. Comellas Joseph M. Reinhardt S. Gerard Letícia Rittner R.A. Lotufo 189 3 0 04 Dec 2023
VINNA for Neonates -- Orientation Independence through Latent Augmentations Leonie Henschel David Kügler Lilla Zöllei Martin Reuter 236 3 0 29 Nov 2023
Brain-ID: Learning Contrast-agnostic Anatomical Representations for Brain ImagingEuropean Conference on Computer Vision (ECCV), 2023 Peirong Liu Oula Puonti Xiaoling Hu Daniel C. Alexander Juan Eugenio Iglesias MedIm OOD 280 11 0 28 Nov 2023
A 3D Conditional Diffusion Model for Image Quality Transfer -- An Application to Low-Field MRI Seunghoi Kim Henry F. J. Tregidgo A. Eldaly Matteo Figini Daniel C. Alexander DiffM MedIm 162 14 0 11 Nov 2023
Synthetic Tumor Manipulation: With Radiomics Features Inye Na Jonghun Kim Hyunjin Park MedIm AI4CE 97 2 0 05 Nov 2023
Brainchop: Next Generation Web-Based Neuroimaging Application Mohamed Masoud Pratyush Reddy Farfalla Hu Sergey Plis 84 4 0 24 Oct 2023