Language Models Are An Effective Patient Representation Learning Technique For Electronic Health Record Data

6 January 2020

Papers citing "Language Models Are An Effective Patient Representation Learning Technique For Electronic Health Record Data"

46 / 46 papers shown

Title
Foundation models for electronic health records: representation dynamics and transferability Michael C. Burkhart Bashar Ramadan Zewei Liao Kaveri Chhikara Juan C. Rojas William F. Parker Brett Beaulieu-Jones 31 0 0 14 Apr 2025
ChronoFormer: Time-Aware Transformer Architectures for Structured Clinical Event Modeling Yuanyun Zhang Shi Li 39 0 0 10 Apr 2025
Comparing representations of long clinical texts for the task of patient note-identification Safa Alsaidi Marc Vincent O. Boyer Nicolas Garcelon Miguel Couceiro Adrien Coulet 52 0 0 31 Mar 2025
Deep Causal Behavioral Policy Learning: Applications to Healthcare Jonas Knecht Anna Zink Jonathan Kolstad Maya Petersen CML 85 0 0 05 Mar 2025
Large Language Models are Powerful EHR Encoders S. Hegselmann Georg von Arnim Tillmann Rheude Noel Kronenberg David Sontag Gerhard Hindricks R. Eils Benjamin Wild LM&MA 49 1 0 24 Feb 2025
Context Clues: Evaluating Long Context Models for Clinical Prediction Tasks on EHRs Michael Wornow Suhana Bedi Miguel Angel Fuentes Hernandez E. Steinberg Jason Alan Fries Christopher Ré Sanmi Koyejo N. Shah 95 4 0 09 Dec 2024
Representation Learning of Structured Data for Medical Foundation Models Vijay Prakash Dwivedi Viktor Schlegel Andy T. Liu Thanh-Tung Nguyen Abhinav Ramesh Kashyap Jeng Wei Wei-Hsian Yin Stefan Winkler R. Tan 30 0 0 17 Oct 2024
Zero Shot Health Trajectory Prediction Using Transformer P. Renc Y. Jia A. E. Samir J. Was Quanzheng Li D. W. Bates Arkadiusz Sitek AI4TS MedIm 33 14 0 30 Jul 2024
The Platonic Representation Hypothesis Minyoung Huh Brian Cheung Tongzhou Wang Phillip Isola 77 110 0 13 May 2024
Large Language Multimodal Models for 5-Year Chronic Disease Cohort Prediction Using EHR Data Jun-En Ding Phan Nguyen Minh Thao Wen-Chih Peng Jian-Zhe Wang Chun-Cheng Chug ... Dongsheng Luo Chi-Te Wang Pei-fu Chen Feng Liu Fang-Ming Hung LM&MA 30 4 0 02 Mar 2024
On the Challenges and Opportunities in Generative AI Laura Manduchi Kushagra Pandey Robert Bamler Ryan Cotterell Sina Daubener ... F. Wenzel Frank Wood Stephan Mandt Vincent Fortuin Vincent Fortuin 56 17 0 28 Feb 2024
Large Language Models(LLMs) on Tabular Data: Prediction, Generation, and Understanding -- A Survey Xi Fang Weijie Xu Fiona Anting Tan Jiani Zhang Ziqing Hu Yanjun Qi Scott Nickleach Diego Socolinsky Srinivasan H. Sengamedu Christos Faloutsos LMTD ALM 37 66 0 27 Feb 2024
RelayAttention for Efficient Large Language Model Serving with Long System Prompts Lei Zhu Xinjiang Wang Wayne Zhang Rynson W. H. Lau 28 5 0 22 Feb 2024
Towards a Foundation Model for Brain Age Prediction using coVariance Neural Networks Saurabh Sihag Gonzalo Mateos Alejandro Ribeiro 28 5 0 12 Feb 2024
Unsupervised Discovery of Clinical Disease Signatures Using Probabilistic Independence Thomas A. Lasko J. M. Still Thomas Z. Li Marco Barbero Mota William W Stead Eric V. Strobl Bennett A. Landman Fabien Maldonado 28 1 0 08 Feb 2024
Emergency Department Decision Support using Clinical Pseudo-notes Simon A. Lee Sujay Jain Alex Chen Kyoka Ono Jennifer Fang Á. Rudas Jeffrey N. Chiang 19 8 0 31 Jan 2024
Event-Based Contrastive Learning for Medical Time Series Hyewon Jeong Nassim Oufattole Matthew B. A. McDermott Aparna Balagopalan P. Chandak Marzyeh Ghassemi Collin M. Stultz 21 4 0 16 Dec 2023
A Multi-Center Study on the Adaptability of a Shared Foundation Model for Electronic Health Records L. Guo Jason Alan Fries E. Steinberg Scott L. Fleming Keith Morse Catherine Aftandilian J. Posada Nigam Shah L. Sung OOD 21 13 0 20 Nov 2023
Multimodal Clinical Benchmark for Emergency Care (MC-BEC): A Comprehensive Benchmark for Evaluating Foundation Models in Emergency Medicine Emma Chen Aman Kansal Julie Chen B. Jin Julia Rachel Reisler David A Kim Pranav Rajpurkar 35 14 0 07 Nov 2023
Prompt Cache: Modular Attention Reuse for Low-Latency Inference In Gim Guojun Chen Seung-seob Lee Nikhil Sarda Anurag Khandelwal Lin Zhong 34 75 0 07 Nov 2023
Benefits and Harms of Large Language Models in Digital Mental Health Munmun De Choudhury Sachin R. Pendse Neha Kumar LM&MA AI4MH 22 41 0 07 Nov 2023
General-Purpose Retrieval-Enhanced Medical Prediction Model Using Near-Infinite History Junu Kim Chaeeun Shim Bosco Seong Kyu Yang Chami Im Sung Yoon Lim Han-Gil Jeong Edward Choi 22 8 0 31 Oct 2023
Cost-Sensitive Best Subset Selection for Logistic Regression: A Mixed-Integer Conic Optimization Perspective Ricardo Knauer Erik Rodner 21 5 0 09 Oct 2023
CPLLM: Clinical Prediction with Large Language Models Ofir Ben Shoham Nadav Rappoport LM&MA 34 24 0 20 Sep 2023
Machine Learning for Administrative Health Records: A Systematic Review of Techniques and Applications Adrian Wilkins-Caruana M. Bandara Katarzyna Musial D. Catchpoole Paul J. Kennedy 16 10 0 27 Aug 2023
Med-Flamingo: a Multimodal Medical Few-shot Learner Michael Moor Qian Huang Shirley Wu Michihiro Yasunaga C. Zakka Yashodhara Dalmia E. Reis Pranav Rajpurkar J. Leskovec LM&MA MedIm 27 231 0 27 Jul 2023
Multimodal LLMs for health grounded in individual-specific data Anastasiya Belyaeva J. Cosentino F. Hormozdiari Krish Eswaran S. Shetty Greg C. Corrado Andrew Carroll Cory Y. McLean N. Furlotte LM&MA 33 49 0 18 Jul 2023
Interpreting deep embeddings for disease progression clustering Anna Munoz-Farre Antonios Poulakakis-Daktylidis Dilini M. Kothalawala A. Rodriguez-Martinez 28 0 0 12 Jul 2023
EHRSHOT: An EHR Benchmark for Few-Shot Evaluation of Foundation Models Michael Wornow Rahul Thapa E. Steinberg Jason Alan Fries N. Shah VLM OOD AI4MH 18 36 0 05 Jul 2023
Natural Language Processing in Electronic Health Records in Relation to Healthcare Decision-making: A Systematic Review Elias Hossain R. Rana N. Higgins J. Soar P. Barua Anthony R. Pisani Ph. D K. Turner 19 182 0 22 Jun 2023
Event Stream GPT: A Data Pre-processing and Modeling Library for Generative, Pre-trained Transformers over Continuous-time Sequences of Complex Events Matthew B. A. McDermott Bret A. Nestor Peniel Argaw I. Kohane AI4TS 24 21 0 20 Jun 2023
The Shaky Foundations of Clinical Foundation Models: A Survey of Large Language Models and Foundation Models for EMRs Michael Wornow Yizhe Xu Rahul Thapa Birju S. Patel E. Steinberg Scott L. Fleming M. Pfeffer Jason Alan Fries N. Shah LM&MA 23 32 0 22 Mar 2023
DEPLOYR: A technical framework for deploying custom real-time machine learning models into the electronic medical record Conor K. Corbin R. Maclay Aakash Acharya Sreedevi Mony Soumya Punnathanam Rahul Thapa N. Kotecha N. Shah Jonathan H. Chen 15 17 0 11 Mar 2023
Transfer Knowledge from Natural Language to Electrocardiography: Can We Detect Cardiovascular Disease Through Language Models? Jielin Qiu William Jongwon Han Jiacheng Zhu Mengdi Xu Michael A. Rosenberg Emerson Liu Douglas Weber Ding Zhao 24 21 0 21 Jan 2023
MOTOR: A Time-To-Event Foundation Model For Structured Medical Records E. Steinberg Jason Alan Fries Yizhe Xu N. Shah OOD AI4TS 28 13 0 09 Jan 2023
sEHR-CE: Language modelling of structured EHR data for efficient and generalizable patient cohort expansion Anna Munoz-Farre Harry Rose S. A. Cakiroglu 9 4 0 30 Nov 2022
GenHPF: General Healthcare Predictive Framework with Multi-task Multi-source Learning Kyunghoon Hur Jungwoo Oh Junu Kim Jiyoun Kim Min Jae Lee Eunbyeol Choi Seong-Eun Moon Young-Hak Kim Louis Atallah E. Choi AI4TS 9 22 0 20 Jul 2022
Enriching Unsupervised User Embedding via Medical Concepts Xiaolei Huang Franck Dernoncourt Mark Dredze 15 3 0 20 Mar 2022
AutoMap: Automatic Medical Code Mapping for Clinical Prediction Model Deployment Zhenbang Wu Cao Xiao Lucas Glass David M. Liebovitz Jimeng Sun 29 5 0 04 Mar 2022
Leveraging Time Irreversibility with Order-Contrastive Pre-training Monica Agrawal Hunter Lang M. Offin L. Gazit David Sontag 19 6 0 04 Nov 2021
A comparison of approaches to improve worst-case predictive model performance over patient subpopulations Stephen R. Pfohl Haoran Zhang Yizhe Xu Agata Foryciarz Marzyeh Ghassemi N. Shah OOD 26 22 0 27 Aug 2021
Unifying Heterogeneous Electronic Health Records Systems via Text-Based Code Embedding Kyunghoon Hur Jiyoung Lee Jungwoo Oh Wesley Price Young-Hak Kim E. Choi 30 17 0 08 Aug 2021
Explainable Health Risk Predictor with Transformer-based Medicare Claim Encoder Chuhong Lahlou Ancil Crayton C. Trier E. Willett MedIm 16 5 0 19 May 2021
Generalized and Transferable Patient Language Representation for Phenotyping with Limited Data Yuqi Si E. Bernstam Kirk Roberts 21 8 0 24 Feb 2021
Deep Representation Learning of Patient Data from Electronic Health Records (EHR): A Systematic Review Yuqi Si Jingcheng Du Zhao Li Xiaoqian Jiang T. Miller Fei Wang W. J. Zheng Kirk Roberts OOD 13 154 0 06 Oct 2020
Convolutional Neural Networks for Sentence Classification Yoon Kim AILaw VLM 255 13,364 0 25 Aug 2014