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2008.07347
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HunFlair: An Easy-to-Use Tool for State-of-the-Art Biomedical Named Entity Recognition
17 August 2020
Leon Weber
Mario Sanger
Jannes Munchmeyer
Maryam Habibi
Ulf Leser
Alan Akbik
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Papers citing
"HunFlair: An Easy-to-Use Tool for State-of-the-Art Biomedical Named Entity Recognition"
27 / 27 papers shown
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Anniek Myatt
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LLMs in Biomedicine: A study on clinical Named Entity Recognition
Masoud Monajatipoor
Jiaxin Yang
Joel Stremmel
Melika Emami
Fazlolah Mohaghegh
Mozhdeh Rouhsedaghat
Kai-Wei Chang
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351
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10 Apr 2024
Extracting Biomedical Entities from Noisy Audio Transcripts
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Kellen Morgan
Adrian Tan
Billy Linares
Sheri Osborn
Emma Majors
Jeremy Davis
Anthony Rios
192
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26 Mar 2024
Korean Bio-Medical Corpus (KBMC) for Medical Named Entity Recognition
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Jiseung Hong
Sumin Park
Dongjun Jang
Jean Seo
Minseok Kim
Chaeyoung Oh
Hyopil Shin
223
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24 Mar 2024
HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools
Mario Sanger
Samuele Garda
Xing David Wang
Leon Weber-Genzel
Pia Droop
Benedikt Fuchs
Alan Akbik
Ulf Leser
385
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19 Feb 2024
CSMeD: Bridging the Dataset Gap in Automated Citation Screening for Systematic Literature Reviews
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Wojciech Kusa
Óscar E. Mendoza
Matthias Samwald
Petr Knoth
Allan Hanbury
339
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21 Nov 2023
Inspire the Large Language Model by External Knowledge on BioMedical Named Entity Recognition
Junyi Bian
Jiaxuan Zheng
Yuyi Zhang
Shanfeng Zhu
284
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21 Sep 2023
Into the Single Cell Multiverse: an End-to-End Dataset for Procedural Knowledge Extraction in Biomedical Texts
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R. Dannenfelser
Jeffrey Zhong
Ran Zhang
Vicky Yao
245
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04 Sep 2023
Rethinking Document-Level Relation Extraction: A Reality Check
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Yequan Wang
Shuai Zhang
Min Zhang
249
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15 Jun 2023
Partial Annotation Learning for Biomedical Entity Recognition
IEEE journal of biomedical and health informatics (IEEE JBHI), 2023
Liangping Ding
Giovanni Colavizza
Zhixiong Zhang
226
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0
22 May 2023
Biomedical Named Entity Recognition via Dictionary-based Synonym Generalization
Conference on Empirical Methods in Natural Language Processing (EMNLP), 2023
Z. Fu
Yixuan Su
Zaiqiao Meng
Nigel Collier
MedIm
318
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0
22 May 2023
EasyNER: A Customizable Easy-to-Use Pipeline for Deep Learning- and Dictionary-based Named Entity Recognition from Medical and Life Science Text
Rafsan Ahmed
P. Berntsson
Alexander Skafte
Salma Kazemi Rashed
Marcus Klang
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Ola Olde
William Lindholm
Antton Lamarca Arrizabalaga
P. Nugues
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242
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16 Apr 2023
Exploring Partial Knowledge Base Inference in Biomedical Entity Linking
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Keming Lu
Zheng Yuan
208
4
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18 Mar 2023
A Comprehensive Study of Gender Bias in Chemical Named Entity Recognition Models
North American Chapter of the Association for Computational Linguistics (NAACL), 2022
Xingmeng Zhao
A. Niazi
Anthony Rios
282
3
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24 Dec 2022
AIONER: All-in-one scheme-based biomedical named entity recognition using deep learning
Ling Luo
Chih-Hsuan Wei
Po-Ting Lai
Robert Leaman
Qingyu Chen
Zhiyong Lu
304
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30 Nov 2022
Enhancing Label Consistency on Document-level Named Entity Recognition
Minbyul Jeong
Jaewoo Kang
218
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24 Oct 2022
TERMinator: A system for scientific texts processing
International Conference on Computational Linguistics (COLING), 2022
E. Bruches
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317
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Keyword Extraction in Scientific Documents
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Susie Xi Rao
Piriyakorn Piriyatamwong
P. Ghoshal
Sara Nasirian
Emmanuel de Salis
Sandra Mitrović
Michael Wechner
Vanya Brucker
P. Egger
Ce Zhang
172
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Assigning Species Information to Corresponding Genes by a Sequence Labeling Framework
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Chih-Hsuan Wei
Po-Ting Lai
Qingyu Chen
R. Dogan
Zhiyong Lu
181
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0
08 May 2022
Learning to Discover Medicines
International Journal of Data Science and Analysis (JDSA), 2022
T. Nguyen
Thin Nguyen
T. Tran
205
2
0
14 Feb 2022
Razmecheno: Named Entity Recognition from Digital Archive of Diaries "Prozhito"
Timofey Atnashev
V. Ganeeva
Roman S. Kazakov
Daria Matyash
Michael Sonkin
E. Voloshina
O. Serikov
Ekaterina Artemova
166
3
0
24 Jan 2022
BERN2: an advanced neural biomedical named entity recognition and normalization tool
Mujeen Sung
Minbyul Jeong
Yonghwa Choi
Donghyeon Kim
Jinhyuk Lee
Jaewoo Kang
MedIm
299
133
0
06 Jan 2022
CLIN-X: pre-trained language models and a study on cross-task transfer for concept extraction in the clinical domain
Lukas Lange
Heike Adel
Jannik Strötgen
Dietrich Klakow
AILaw
LM&MA
308
26
0
16 Dec 2021
Analyzing Research Trends in Inorganic Materials Literature Using NLP
Fusataka Kuniyoshi
Jun Ozawa
Makoto Miwa
187
10
0
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BioNerFlair: biomedical named entity recognition using flair embedding and sequence tagger
Harsh Patel
186
8
0
03 Nov 2020
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