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COMETA: A Corpus for Medical Entity Linking in the Social Media

7 October 2020

Ehsan Shareghi

Papers citing "COMETA: A Corpus for Medical Entity Linking in the Social Media"

45 / 45 papers shown

Title
Multimodal Large Language Models for Medicine: A Comprehensive Survey Jiarui Ye Hao Tang LM&MA 173 0 0 29 Apr 2025
A Survey of Large Language Models for Healthcare: from Data, Technology, and Applications to Accountability and Ethics Kai He Rui Mao Qika Lin Yucheng Ruan Xiang Lan Mengling Feng Min Zhang LM&MA AILaw 228 176 0 28 Jan 2025
A Comprehensive Survey of Large Language Models and Multimodal Large Language Models in Medicine Hanguang Xiao Feizhong Zhou Xianglong Liu Tianqi Liu Zhipeng Li Xin Liu Xiaoxuan Huang AILaw LM&MA LRM 137 30 0 31 Dec 2024
Unified Representation of Genomic and Biomedical Concepts through Multi-Task, Multi-Source Contrastive Learning Hongyi Yuan Suqi Liu Kelly Cho Katherine P. Liao Alexandre Pereira T. Cai MedIm 57 0 0 14 Oct 2024
Learning from Negative Samples in Generative Biomedical Entity Linking Chanhwi Kim Hyunjae Kim Sihyeon Park Jiwoo Lee Mujeen Sung Jaewoo Kang MedIm 72 0 0 29 Aug 2024
Evaluating the Robustness of Adverse Drug Event Classification Models Using Templates Dorothea MacPhail David Harbecke Lisa Raithel Sebastian Möller 35 1 0 02 Jul 2024
A Comprehensive Survey of Scientific Large Language Models and Their Applications in Scientific Discovery Yu Zhang Xiusi Chen Bowen Jin Sheng Wang Shuiwang Ji Wei Wang Jiawei Han 140 42 0 16 Jun 2024
SNOBERT: A Benchmark for clinical notes entity linking in the SNOMED CT clinical terminology Mikhail Kulyabin Gleb Sokolov Aleksandr Galaida Andreas Maier T. Arias-Vergara 47 1 0 25 May 2024
Biomedical Entity Linking for Dutch: Fine-tuning a Self-alignment BERT Model on an Automatically Generated Wikipedia Corpus Fons Hartendorp T. Seinen E. V. Mulligen Suzan Verberne 58 0 0 20 May 2024
Identifying and Aligning Medical Claims Made on Social Media with Medical Evidence Anthony James Hughes Xingyi Song 53 1 0 18 May 2024
Open Challenges and Opportunities in Federated Foundation Models Towards Biomedical Healthcare Xingyu Li Lu Peng Yuping Wang Weihua Zhang AI4CE MedIm LM&MA 114 12 0 10 May 2024
A Comprehensive Survey on Evaluating Large Language Model Applications in the Medical Industry Yining Huang Keke Tang Meilian Chen Boyuan Wang ELM LM&MA 72 15 0 24 Apr 2024
Unveiling LLM Evaluation Focused on Metrics: Challenges and Solutions Taojun Hu Xiao-Hua Zhou ELM 81 18 0 14 Apr 2024
Biomedical Entity Linking as Multiple Choice Question Answering Zhenxi Lin Ziheng Zhang Xian Wu Yefeng Zheng 70 2 0 23 Feb 2024
Improving Biomedical Entity Linking with Retrieval-enhanced Learning Zhenxi Lin Ziheng Zhang Xian Wu Yefeng Zheng 57 2 0 15 Dec 2023
xMEN: A Modular Toolkit for Cross-Lingual Medical Entity Normalization Florian Borchert Ignacio Llorca Roland Roller Bert Arnrich M. Schapranow 60 6 0 17 Oct 2023
A Comprehensive Evaluation of Large Language Models on Benchmark Biomedical Text Processing Tasks Fangshuo Liao Md Tahmid Rahman Laskar Cruz Barnum Jimmy Xiangji Huang AI4MH LM&MA 85 82 0 06 Oct 2023
Weakly Supervised Text Classification on Free Text Comments in Patient-Reported Outcome Measures Anna-Grace Linton Vania Dimitrova A. Downing Richard Wagland A. Glaser 70 2 0 11 Aug 2023
Ontology Enrichment from Texts: A Biomedical Dataset for Concept Discovery and Placement Hang Dong Jiaoyan Chen Yuan He Ian Horrocks 96 8 0 26 Jun 2023
Medical Data Augmentation via ChatGPT: A Case Study on Medication Identification and Medication Event Classification Shouvon Sarker Lijun Qian Xishuang Dong LM&MA AI4MH 45 11 0 10 Jun 2023
Biomedical Named Entity Recognition via Dictionary-based Synonym Generalization Z. Fu Yixuan Su Zaiqiao Meng Nigel Collier MedIm 55 3 0 22 May 2023
A Novel Dataset Towards Extracting Virus-Host Interactions Rasha Alshawi Atriya Sen Nate Upham B. Sterner 13 0 0 11 May 2023
MasonNLP+ at SemEval-2023 Task 8: Extracting Medical Questions, Experiences and Claims from Social Media using Knowledge-Augmented Pre-trained Language Models Giridhar Kaushik Ramachandran Haritha Gangavarapu K. Lybarger Özlem Uzuner 52 1 0 26 Apr 2023
Reveal the Unknown: Out-of-Knowledge-Base Mention Discovery with Entity Linking Hang Dong Jiaoyan Chen Yuan He Yinan Liu Ian Horrocks 103 10 0 14 Feb 2023
Language Models sounds the Death Knell of Knowledge Graphs Kunal Suri Ashutosh Kumar Singh Prakhar Mishra Swapna Sourav Rout Rajesh Sabapathy AI4MH 42 2 0 10 Jan 2023
Detecting Entities in the Astrophysics Literature: A Comparison of Word-based and Span-based Entity Recognition Methods Xiang Dai Sarvnaz Karimi 56 3 0 24 Nov 2022
Parameter-Efficient Legal Domain Adaptation Jonathan Li R. Bhambhoria Xiao-Dan Zhu ELM AILaw ALM 70 14 0 25 Oct 2022
RedHOT: A Corpus of Annotated Medical Questions, Experiences, and Claims on Social Media Somin Wadhwa Vivek Khetan Silvio Amir Byron C. Wallace 68 19 0 12 Oct 2022
Medical Question Understanding and Answering with Knowledge Grounding and Semantic Self-Supervision Khalil Mrini Harpreet Singh Franck Dernoncourt Seunghyun Yoon Trung Bui Walter Chang E. Farcas Ndapandula Nakashole ELM AI4MH 67 4 0 30 Sep 2022
Cross-lingual Approaches for the Detection of Adverse Drug Reactions in German from a Patient's Perspective Lisa Raithel Philippe E. Thomas Roland Roller Oliver Sapina Sebastian Möller Pierre Zweigenbaum 63 3 0 03 Aug 2022
A Biomedical Pipeline to Detect Clinical and Non-Clinical Named Entities Shaina Raza B. Schwartz 49 0 0 02 Jul 2022
Recovering Patient Journeys: A Corpus of Biomedical Entities and Relations on Twitter (BEAR) Amelie Wuhrl Roman Klinger 47 4 0 21 Apr 2022
Detection, Disambiguation, Re-ranking: Autoregressive Entity Linking as a Multi-Task Problem Khalil Mrini Shaoliang Nie Jiatao Gu Sinong Wang Maziar Sanjabi Hamed Firooz 71 19 0 12 Apr 2022
Generative Biomedical Entity Linking via Knowledge Base-Guided Pre-training and Synonyms-Aware Fine-tuning Hongyi Yuan Zheng Yuan Sheng Yu MedIm 60 45 0 11 Apr 2022
BioBART: Pretraining and Evaluation of A Biomedical Generative Language Model Hongyi Yuan Zheng Yuan Ruyi Gan Jiaxing Zhang Yutao Xie Sheng Yu LM&MA 81 132 0 08 Apr 2022
Measuring Context-Word Biases in Lexical Semantic Datasets Qianchu Liu Diana McCarthy Anna Korhonen 71 2 0 13 Dec 2021
BCH-NLP at BioCreative VII Track 3: medications detection in tweets using transformer networks and multi-task learning Dongfang Xu Shan Chen T. Miller MedIm 69 4 0 26 Nov 2021
Pre-trained Language Models in Biomedical Domain: A Systematic Survey Benyou Wang Qianqian Xie Jiahuan Pei Zhihong Chen Prayag Tiwari Zhao Li Jie Fu LM&MA AI4CE 154 172 0 11 Oct 2021
BERT might be Overkill: A Tiny but Effective Biomedical Entity Linker based on Residual Convolutional Neural Networks T. Lai Heng Ji ChengXiang Zhai 66 31 0 06 Sep 2021
Biomedical Interpretable Entity Representations Diego Garcia-Olano Yasumasa Onoe Ioana Baldini Joydeep Ghosh Byron C. Wallace Kush R. Varshney AI4CE 45 3 0 17 Jun 2021
Learning Domain-Specialised Representations for Cross-Lingual Biomedical Entity Linking Fangyu Liu Ivan Vulić Anna Korhonen Nigel Collier 80 49 0 30 May 2021
Zero-shot Medical Entity Retrieval without Annotation: Learning From Rich Knowledge Graph Semantics Luyang Kong C. Winestock Parminder Bhatia AI4MH 130 7 0 26 May 2021
AMMU : A Survey of Transformer-based Biomedical Pretrained Language Models Katikapalli Subramanyam Kalyan A. Rajasekharan S. Sangeetha LM&MA MedIm 112 171 0 16 Apr 2021
Fast, Effective, and Self-Supervised: Transforming Masked Language Models into Universal Lexical and Sentence Encoders Fangyu Liu Ivan Vulić Anna Korhonen Nigel Collier VLM OffRL 124 121 0 16 Apr 2021
Does the Magic of BERT Apply to Medical Code Assignment? A Quantitative Study Shaoxiong Ji M. Holtta Pekka Marttinen 94 74 0 11 Mar 2021