Self supervised contrastive learning for digital histopathology

27 November 2020

Papers citing "Self supervised contrastive learning for digital histopathology"

50 / 115 papers shown

Title
MoMA: Momentum Contrastive Learning with Multi-head Attention-based Knowledge Distillation for Histopathology Image Analysis T. Vuong J. T. Kwak 33 6 0 31 Aug 2023
A General-Purpose Self-Supervised Model for Computational Pathology Richard J. Chen Tong Ding Ming Y. Lu Drew F. K. Williamson Guillaume Jaume ... Judy J. Wang Walt Williams L. Le Georg Gerber Faisal Mahmood MedIm 20 42 0 29 Aug 2023
Microscopy Image Segmentation via Point and Shape Regularized Data Synthesis Shijie Li Mengwei Ren T. Ach Guido Gerig 8 0 0 18 Aug 2023
A Hierarchical Transformer Encoder to Improve Entire Neoplasm Segmentation on Whole Slide Image of Hepatocellular Carcinoma Zhuxian Guo Qitong Wang Henning Muller Themis Palpanas Nicolas Loménie Camille Kurtz ViT MedIm 13 3 0 11 Jul 2023
ProMIL: Probabilistic Multiple Instance Learning for Medical Imaging Lukasz Struski Dawid Rymarczyk Arkadiusz Lewicki R. Sabiniewicz Jacek Tabor Bartosz Zieliñski 16 5 0 18 Jun 2023
Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images Ming Y. Lu Bowen Chen Andrew Zhang Drew F. K. Williamson Richard J. Chen Tong Ding L. Le Yung-Sung Chuang Faisal Mahmood VLM MedIm 25 99 0 13 Jun 2023
SSL-CPCD: Self-supervised learning with composite pretext-class discrimination for improved generalisability in endoscopic image analysis Ziang Xu J. Rittscher Sharib Ali 13 3 0 31 May 2023
Unsupervised Mutual Transformer Learning for Multi-Gigapixel Whole Slide Image Classification S. Javed Arif Mahmood Talha Qaiser J. Bingler Markus Leippold ViT MedIm 22 6 0 03 May 2023
A Cookbook of Self-Supervised Learning Randall Balestriero Mark Ibrahim Vlad Sobal Ari S. Morcos Shashank Shekhar ... Pierre Fernandez Amir Bar Hamed Pirsiavash Yann LeCun Micah Goldblum SyDa FedML SSL 33 272 0 24 Apr 2023
Learning Self-Supervised Representations for Label Efficient Cross-Domain Knowledge Transfer on Diabetic Retinopathy Fundus Images Ekta Gupta Varun Gupta M. Chopra Prakash Chandra Chhipa Marcus Liwicki 14 1 0 20 Apr 2023
Morph-SSL: Self-Supervision with Longitudinal Morphing to Predict AMD Progression from OCT A. Chakravarty T. Emre Oliver Leingang Sophie Riedl Julia Mai ... S. Sivaprasad Daniel Rueckert A. Lotery U. Schmidt-Erfurth Hrvoje Bogunović 26 1 0 17 Apr 2023
Data Efficient Contrastive Learning in Histopathology using Active Sampling Tahsin Reasat David S. Smith MedIm 8 0 0 28 Mar 2023
SC-MIL: Supervised Contrastive Multiple Instance Learning for Imbalanced Classification in Pathology Dinkar Juyal S. Shingi Syed Ashar Javed Harshith Padigela Chintan Shah Anand Sampat Archit Khosla J. Abel A. Taylor-Weiner 22 6 0 23 Mar 2023
A Dual-branch Self-supervised Representation Learning Framework for Tumour Segmentation in Whole Slide Images Hao Wang E. Ahn Jinman Kim 15 7 0 20 Mar 2023
Robust Semi-Supervised Learning for Histopathology Images through Self-Supervision Guided Out-of-Distribution Scoring Nikhil Cherian Kurian Varsha S Abhijit Patil Shashikant D. Khade A. Sethi OOD 12 1 0 17 Mar 2023
AugDiff: Diffusion based Feature Augmentation for Multiple Instance Learning in Whole Slide Image Zhucheng Shao Liuxi Dai Yifeng Wang Haoqian Wang Yongbing Zhang MedIm DiffM 189 0 0 11 Mar 2023
VOLTA: an Environment-Aware Contrastive Cell Representation Learning for Histopathology Ramin Nakhli Allen W. Zhang Katherine Rich Amirali Darbandsari Elahe Shenasa ... K. Milne J. McAlpine B. Nelson C. Gilks A. Bashashati 14 5 0 08 Mar 2023
Self-supervised pseudo-colorizing of masked cells Royden Wagner Carlos Fernandez Lopez Christoph Stiller 15 0 0 12 Feb 2023
A Review of Predictive and Contrastive Self-supervised Learning for Medical Images Wei-Chien Wang E. Ahn Da-wei Feng Jinman Kim MedIm 16 27 0 10 Feb 2023
Multi-domain stain normalization for digital pathology: A cycle-consistent adversarial network for whole slide images Martin J. Hetz Tabea-Clara Bucher T. Brinker OOD MedIm 18 10 0 23 Jan 2023
Benchmarking Self-Supervised Learning on Diverse Pathology Datasets Mingu Kang Heon Song Seonwook Park Donggeun Yoo Sérgio Pereira 11 128 0 09 Dec 2022
Giga-SSL: Self-Supervised Learning for Gigapixel Images Tristan Lazard Marvin Lerousseau Etienne Decencière Thomas Walter 20 17 0 06 Dec 2022
Deep Learning-Based Prediction of Molecular Tumor Biomarkers from H&E: A Practical Review Heather D. Couture 35 20 0 27 Nov 2022
Stain-invariant self supervised learning for histopathology image analysis Alexandre Tiard A. Wong D. J. Ho Yang Wu Eliram Nof Alvin C. Goh Stefano Soatto Saad Nadeem OOD 11 5 0 14 Nov 2022
Seeded iterative clustering for histology region identification Eduard Chelebian F. Ciompi C. Wählby 12 2 0 14 Nov 2022
Language models are good pathologists: using attention-based sequence reduction and text-pretrained transformers for efficient WSI classification Juan Pisula Katarzyna Bozek VLM MedIm 20 3 0 14 Nov 2022
Multiple Instance Learning via Iterative Self-Paced Supervised Contrastive Learning Kangning Liu Weicheng Zhu Yiqiu Shen Sheng Liu N. Razavian Krzysztof J. Geras C. Fernandez‐Granda SSL 28 24 0 17 Oct 2022
HistoPerm: A Permutation-Based View Generation Approach for Improving Histopathologic Feature Representation Learning Joseph DiPalma Lorenzo Torresani Saeed Hassanpour AI4TS MedIm 14 2 0 13 Sep 2022
Self-Supervised Pretraining for 2D Medical Image Segmentation András Kalapos Bálint Gyires-Tóth 9 30 0 01 Sep 2022
Towards Label-efficient Automatic Diagnosis and Analysis: A Comprehensive Survey of Advanced Deep Learning-based Weakly-supervised, Semi-supervised and Self-supervised Techniques in Histopathological Image Analysis Linhao Qu Siyu Liu Xiaoyu Liu Manning Wang Zhijian Song 15 56 0 18 Aug 2022
CCRL: Contrastive Cell Representation Learning Ramin Nakhli Amirali Darbandsari H. Farahani A. Bashashati SSL 22 3 0 12 Aug 2022
Metadata-enhanced contrastive learning from retinal optical coherence tomography images R. Holland Oliver Leingang Hrvoje Bogunović Sophie Riedl L. Fritsche ... U. Schmidt-Erfurth S. Sivaprasad A. Lotery Daniel Rueckert M. Menten 12 8 0 04 Aug 2022
Contrastive Image Synthesis and Self-supervised Feature Adaptation for Cross-Modality Biomedical Image Segmentation Xinrong Hu Corey Wang Yiyu Shi MedIm 28 1 0 27 Jul 2022
ConCL: Concept Contrastive Learning for Dense Prediction Pre-training in Pathology Images Jiawei Yang Hanbo Chen Yuan Liang Junzhou Huang Lei He Jianhua Yao 30 18 0 14 Jul 2022
ReMix: A General and Efficient Framework for Multiple Instance Learning based Whole Slide Image Classification Jiawei Yang Hanbo Chen Yu Zhao Fan Yang Yao Zhang Lei He Jianhua Yao VLM 15 39 0 05 Jul 2022
Test Time Transform Prediction for Open Set Histopathological Image Recognition Adrian Galdran. Katherine J. Hewitt Katherine J. Hewitt Narmin L. Ghaffari Jakob N. Kather G. Carneiro M. A. G. Ballester 20 5 0 20 Jun 2022
Evaluating histopathology transfer learning with ChampKit Jakub R. Kaczmarzyk Tahsin M. Kurc Shahira Abousamra Rajarsi R. Gupta Joel H. Saltz Peter K. Koo VLM MedIm 12 7 0 14 Jun 2022
Scaling Vision Transformers to Gigapixel Images via Hierarchical Self-Supervised Learning Richard J. Chen Chengkuan Chen Yicong Li Tiffany Y. Chen A. Trister Rahul G. Krishnan Faisal Mahmood ViT MedIm 34 406 0 06 Jun 2022
Pseudo-Data based Self-Supervised Federated Learning for Classification of Histopathological Images Jun Shi Yuan-Yang Zhang Zheng Li Xiangmin Han Saisai Ding Jun Wang Shihui Ying FedML OOD 14 11 0 31 May 2022
Robust and Efficient Medical Imaging with Self-Supervision Shekoofeh Azizi Laura J. Culp Jan Freyberg Basil Mustafa Sebastien Baur ... Geoffrey E. Hinton N. Houlsby Alan Karthikesalingam Mohammad Norouzi Vivek Natarajan OOD 63 58 0 19 May 2022
Mapping the landscape of histomorphological cancer phenotypes using self-supervised learning on unlabeled, unannotated pathology slides A. Quiros N. Coudray A. Yeaton Xinyu Yang Bojing Liu ... H. Pass A. Moreira J. L. Quesne A. Tsirigos Ke-Fei Yuan SSL 11 5 0 04 May 2022
From Modern CNNs to Vision Transformers: Assessing the Performance, Robustness, and Classification Strategies of Deep Learning Models in Histopathology Maximilian Springenberg A. Frommholz M. Wenzel Eva Weicken Jackie Ma Nils Strodthoff MedIm 25 42 0 11 Apr 2022
Self-distillation Augmented Masked Autoencoders for Histopathological Image Classification Yang Luo Zhineng Chen Shengtian Zhou Xieping Gao 20 1 0 31 Mar 2022
CD-Net: Histopathology Representation Learning using Pyramidal Context-Detail Network S. Kapse Srijan Das Prateek Prasanna 21 5 0 28 Mar 2022
Semi-supervised machine learning model for analysis of nanowire morphologies from transmission electron microscopy images Shizhao Lu Brian Montz T. Emrick A. Jayaraman 25 7 0 25 Mar 2022
Interpretable Prediction of Lung Squamous Cell Carcinoma Recurrence With Self-supervised Learning Weicheng Zhu C. Fernandez‐Granda N. Razavian SSL 16 4 0 23 Mar 2022
Magnification Prior: A Self-Supervised Method for Learning Representations on Breast Cancer Histopathological Images Prakash Chandra Chhipa Richa Upadhyay G. Pihlgren Rajkumar Saini Seiichi Uchida Marcus Liwicki SSL MedIm 14 19 0 15 Mar 2022
Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology Richard J. Chen Rahul G. Krishnan MedIm ViT 22 84 0 01 Mar 2022
One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification S. Graham Q. Vu Mostafa Jahanifar Shan E Ahmed Raza F. Minhas David R. J. Snead Nasir M. Rajpoot MedIm 16 28 0 28 Feb 2022
Weakly-supervised learning for image-based classification of primary melanomas into genomic immune subgroups Lucy Godson Navid Alemi Koohbanani J. Nsengimana G. Cook Emily L. Clarke Darren Treanor D. Bishop J. Newton-Bishop A. Gooya 11 1 0 23 Feb 2022