Self supervised contrastive learning for digital histopathology

27 November 2020

Papers citing "Self supervised contrastive learning for digital histopathology"

50 / 115 papers shown

Title
Wasserstein Distances Made Explainable: Insights into Dataset Shifts and Transport Phenomena Philip Naumann Jacob R. Kauffmann G. Montavon 19 0 0 09 May 2025
ModalTune: Fine-Tuning Slide-Level Foundation Models with Multi-Modal Information for Multi-task Learning in Digital Pathology Vishwesh Ramanathan Tony Xu Pushpak Pati Faruk Ahmed Maged Goubran Anne L. Martel 43 0 0 21 Mar 2025
Leveraging Vision-Language Embeddings for Zero-Shot Learning in Histopathology Images M. Rahaman Ewan K. A. Millar Erik H. W. Meijering VLM 56 0 0 13 Mar 2025
Spatial Transcriptomics Analysis of Spatially Dense Gene Expression Prediction Ruikun Zhang Yan Yang Liyuan Pan 60 0 0 03 Mar 2025
MIRROR: Multi-Modal Pathological Self-Supervised Representation Learning via Modality Alignment and Retention Tianyi Wang Jianan Fan Dingxin Zhang Dongnan Liu Yong-quan Xia Heng Huang Weidong Cai 34 0 0 01 Mar 2025
Diffusion Generative Modeling for Spatially Resolved Gene Expression Inference from Histology Images Sichen Zhu Yuchen Zhu Molei Tao Peng-Chao Qiu MedIm 29 0 0 28 Jan 2025
Maximising Histopathology Segmentation using Minimal Labels via Self-Supervision Zeeshan Nisar T. Lampert 63 0 0 19 Dec 2024
Going Beyond H&E and Oncology: How Do Histopathology Foundation Models Perform for Multi-stain IHC and Immunology? Amaya Gallagher-Syed Elena Pontarini M. Lewis Michael Barnes Gregory Slabaugh 18 1 0 28 Oct 2024
Segmentation Strategies in Deep Learning for Prostate Cancer Diagnosis: A Comparative Study of Mamba, SAM, and YOLO Ali Badiezadeh Amin Malekmohammadi Seyed Mostafa Mirhassani Parisa Gifani Majid Vafaeezadeh Mamba 29 2 0 24 Sep 2024
$Exploring learning environments for label\-efficient cancer diagnosis$ Exploring learning environments for label\-efficient cancer diagnosis Samta Rani T. Ahmad Sarfaraz Masood Chandni Saxena 20 0 0 15 Aug 2024
CoBooM: Codebook Guided Bootstrapping for Medical Image Representation Learning Azad Singh Deepak Mishra SSL 34 1 0 08 Aug 2024
Virchow2: Scaling Self-Supervised Mixed Magnification Models in Pathology Eric Zimmermann Eugene Vorontsov Julian Viret Adam Casson Michal Zelechowski ... Razik Yousfi Thomas J. Fuchs Nicolò Fusi Siqi Liu Kristen Severson MedIm 29 27 0 01 Aug 2024
What makes for good morphology representations for spatial omics? Eduard Chelebian C. Avenel C. Wählby 19 0 0 30 Jul 2024
A Survey on Cell Nuclei Instance Segmentation and Classification: Leveraging Context and Attention João D. Nunes D. Montezuma Domingos Oliveira Tania Pereira Jaime S. Cardoso 47 1 0 26 Jul 2024
Leveraging image captions for selective whole slide image annotation Jingna Qiu Marc Aubreville Frauke Wilm Mathias Öttl Jonas Utz M. Schlereth Katharina Breininger 21 0 0 08 Jul 2024
Foundational Models for Pathology and Endoscopy Images: Application for Gastric Inflammation H. Kerdegari Kyle Higgins Dennis Veselkov I. Laponogov I. Poļaka ... Junior Andrea Pescino M. Leja M. Dinis-Ribeiro T. F. Kanonnikoff Kirill Veselkov 35 3 0 26 Jun 2024
HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis Guillaume Jaume Paul Doucet Andrew H. Song Ming Y. Lu Cristina Almagro-Pérez ... Anurag J. Vaidya Richard J. Chen Drew F. K. Williamson Ahrong Kim Faisal Mahmood 44 28 0 23 Jun 2024
AI-based Anomaly Detection for Clinical-Grade Histopathological Diagnostics Jonas Dippel Niklas Prenißl Julius Hense Philipp Liznerski Tobias Winterhoff ... David Horst Maximilian Alber Lukas Ruff Klaus-Robert Müller Frederick Klauschen 24 4 0 21 Jun 2024
Graph Neural Networks in Histopathology: Emerging Trends and Future Directions Siemen Brussee Giorgio Buzzanca Anne M.R. Schrader Jesper Kers 53 8 0 18 Jun 2024
Task-oriented Embedding Counts: Heuristic Clustering-driven Feature Fine-tuning for Whole Slide Image Classification Xuenian Wang Shanshan Shi Renao Yan Qiehe Sun Lianghui Zhu Tian Guan Yonghong He 19 0 0 02 Jun 2024
Self-Contrastive Weakly Supervised Learning Framework for Prognostic Prediction Using Whole Slide Images Saul Fuster Farbod Khoraminia Julio Silva-Rodríguez Umay Kiraz Geert J.L.H. Leenders T. Eftestøl Valery Naranjo Emiel A. M. Janssen T. Zuiverloon K. Engan MedIm 19 0 0 24 May 2024
Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology Andrew H. Song Richard J. Chen Tong Ding Drew F. K. Williamson Guillaume Jaume Faisal Mahmood MedIm 41 27 0 19 May 2024
Transcriptomics-guided Slide Representation Learning in Computational Pathology Guillaume Jaume Lukas Oldenburg Anurag J. Vaidya Richard J. Chen Drew F. K. Williamson Thomas Peeters Andrew H. Song Faisal Mahmood 40 22 0 19 May 2024
PRISM: A Multi-Modal Generative Foundation Model for Slide-Level Histopathology George Shaikovski Adam Casson Kristen Severson Eric Zimmermann Yi Kan Wang ... Peter Hamilton William A. Moye Eugene Vorontsov Siqi Liu Thomas J. Fuchs MedIm 35 23 0 16 May 2024
Classification of Breast Cancer Histopathology Images using a Modified Supervised Contrastive Learning Method Matina Mahdizadeh Sani Ali Royat M. Baghshah 33 0 0 06 May 2024
Adapting Self-Supervised Learning for Computational Pathology Eric Zimmermann Neil Tenenholtz James Hall George Shaikovski Michal Zelechowski ... Fausto Milletari Julian Viret Eugene Vorontsov Siqi Liu Kristen Severson OOD 38 1 0 02 May 2024
Vim4Path: Self-Supervised Vision Mamba for Histopathology Images Ali Nasiri-Sarvi Vincent Quoc-Huy Trinh Hassan Rivaz Mahdi S. Hosseini 33 6 0 20 Apr 2024
PathoTune: Adapting Visual Foundation Model to Pathological Specialists Jiaxuan Lu Fang Yan Xiaofan Zhang Yue Gao Shaoting Zhang VLM LM&MA MedIm 37 6 0 25 Mar 2024
Hierarchical Text-to-Vision Self Supervised Alignment for Improved Histopathology Representation Learning Hasindri Watawana Kanchana Ranasinghe Tariq Mahmood Muzammal Naseer Salman Khan Fahad Shahbaz Khan SSL 38 3 0 21 Mar 2024
Re-identification from histopathology images J. Ganz Jonas Ammeling Samir Jabari Katharina Breininger Marc Aubreville 24 1 0 19 Mar 2024
Accurate Spatial Gene Expression Prediction by integrating Multi-resolution features Youngmin Chung Ji Hun Ha Kyeong Chan Im Joo Sang Lee 19 17 0 12 Mar 2024
Self-Supervised Multiple Instance Learning for Acute Myeloid Leukemia Classification Salome Kazeminia Max Joosten D. Bosnacki Carsten Marr 19 2 0 08 Mar 2024
GRASP: GRAph-Structured Pyramidal Whole Slide Image Representation Ali Khajegili Mirabadi Graham Archibald Amirali Darbandsari A. Contreras-Sanz Ramin Nakhli ... C. Gilks Peter C Black Gang Wang H. Farahani A. Bashashati 32 5 0 06 Feb 2024
RudolfV: A Foundation Model by Pathologists for Pathologists Jonas Dippel Barbara Feulner Tobias Winterhoff Timo Milbich Stephan Tietz ... David Horst Lukas Ruff Klaus-Robert Muller Frederick Klauschen Maximilian Alber 23 28 0 08 Jan 2024
On the calibration of neural networks for histological slide-level classification Alexander Kurz H. A. Mehrtens Tabea-Clara Bucher T. Brinker UQCV MedIm 20 0 0 15 Dec 2023
A Foundational Multimodal Vision Language AI Assistant for Human Pathology Ming Y. Lu Bowen Chen Drew F. K. Williamson Richard J. Chen Kenji Ikamura ... Ivy Liang L. Le Tong Ding Anil V. Parwani Faisal Mahmood MedIm LM&MA 26 20 0 13 Dec 2023
Artificial Intelligence for Digital and Computational Pathology Andrew H. Song Guillaume Jaume Drew F. K. Williamson Ming Y. Lu Anurag J. Vaidya Tiffany R. Miller Faisal Mahmood AI4CE 30 129 0 13 Dec 2023
NearbyPatchCL: Leveraging Nearby Patches for Self-Supervised Patch-Level Multi-Class Classification in Whole-Slide Images Gia-Bao Le Van-Tien Nguyen Trung-Truc Huynh-Le Minh-Triet Tran 22 0 0 12 Dec 2023
A transductive few-shot learning approach for classification of digital histopathological slides from liver cancer Aymen Sadraoui Ségolène Martin Eliott Barbot A. Laurent-Bellue J. Pesquet Catherine Guettier Ismail Ben Ayed MedIm 15 2 0 29 Nov 2023
Rotation-Agnostic Image Representation Learning for Digital Pathology Saghir Alfasly A. Shafique Peyman Nejat Jibran A. Khan Areej Alsaafin Ghazal Alabtah H. R. Tizhoosh MedIm 24 6 0 14 Nov 2023
MyriadAL: Active Few Shot Learning for Histopathology Nico Schiavone Jingyi Wang Shuangzhi Li Roger J. Zemp Xingyu Li 13 1 0 24 Oct 2023
Domain-specific optimization and diverse evaluation of self-supervised models for histopathology Jeremy Lai Faruk Ahmed Supriya Vijay Tiam Jaroensri Jessica Loo ... Jonathan Krause Yun-hui Liu Po-Hsuan Cameron Chen Ellery Wulczyn David F. Steiner 33 7 0 20 Oct 2023
Predicting Ovarian Cancer Treatment Response in Histopathology using Hierarchical Vision Transformers and Multiple Instance Learning Jack Breen Katie Allen K. Zucker Geoff Hall Nishant Ravikumar Nicolas M. Orsi 16 2 0 19 Oct 2023
Data efficient deep learning for medical image analysis: A survey Suruchi Kumari Pravendra Singh 32 12 0 10 Oct 2023
Glioma subtype classification from histopathological images using in-domain and out-of-domain transfer learning: An experimental study Vladimir Despotovic Sang-Yoon Kim Ann-Christin Hau A. Kakoichankava Gilbert Georg Klamminger F. K. Borgmann Katrin B. M. Frauenknecht Michel Mittelbronn P. V. Nazarov 8 4 0 29 Sep 2023
Virchow: A Million-Slide Digital Pathology Foundation Model Eugene Vorontsov Alican Bozkurt Adam Casson George Shaikovski Michal Zelechowski ... Razik Yousfi Christopher Kanan David Klimstra B. Rothrock Thomas J. Fuchs MedIm 11 81 0 14 Sep 2023
Nucleus-aware Self-supervised Pretraining Using Unpaired Image-to-image Translation for Histopathology Images Zhiyun Song Penghui Du Junpeng Yan K. Li Jianzhong Shou Maode Lai Yubo Fan Yan Xu 24 7 0 14 Sep 2023
Contrastive Deep Encoding Enables Uncertainty-aware Machine-learning-assisted Histopathology Nirhoshan Sivaroopan Chamuditha Jayanga Chalani Ekanayake Hasindri Watawana Jathurshan Pradeepkumar Mithunjha Anandakumar Ranga Rodrigo Chamira U. S. Edussooriya D. Wadduwage MedIm UQCV 31 0 0 13 Sep 2023
Attention De-sparsification Matters: Inducing Diversity in Digital Pathology Representation Learning S. Kapse Srijan Das Jingwei Zhang Rajarsi R. Gupta Joel H. Saltz Dimitris Samaras Prateek Prasanna 25 9 0 12 Sep 2023
GenSelfDiff-HIS: Generative Self-Supervision Using Diffusion for Histopathological Image Segmentation Vishnuvardhan Purma Suhas Srinath Seshan Srirangarajan A. Kakkar Prathosh A.P. MedIm DiffM 17 1 0 04 Sep 2023