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2012.00459
Cited By
Improved Variational Bayesian Phylogenetic Inference with Normalizing Flows
Neural Information Processing Systems (NeurIPS), 2020
1 December 2020
Cheng Zhang
BDL
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Papers citing
"Improved Variational Bayesian Phylogenetic Inference with Normalizing Flows"
17 / 17 papers shown
Variational Combinatorial Sequential Monte Carlo for Bayesian Phylogenetics in Hyperbolic Space
International Conference on Artificial Intelligence and Statistics (AISTATS), 2025
Alex Chen
Philipe Chlenski
Kenneth Munyuza
A. Moretti
C. A. Naesseth
I. Pe’er
353
3
0
29 Jan 2025
RapGuard: Safeguarding Multimodal Large Language Models via Rationale-aware Defensive Prompting
Yilei Jiang
Yingshui Tan
Xiangyu Yue
KELM
LRM
349
7
0
25 Dec 2024
Improving Tree Probability Estimation with Stochastic Optimization and Variance Reduction
Statistics and computing (Stat. Comput.), 2024
Tianyu Xie
Musu Yuan
Minghua Deng
Cheng Zhang
203
3
0
09 Sep 2024
Variational Bayesian Phylogenetic Inference with Semi-implicit Branch Length Distributions
Tianyu Xie
Frederick A. Matsen IV
M. Suchard
Cheng Zhang
194
2
0
09 Aug 2024
Torchtree: flexible phylogenetic model development and inference using PyTorch
Mathieu Fourment
Matthew Macaulay
Christiaan J. Swanepoel
Xiang Ji
M. Suchard
Frederick A Matsen IV
BDL
203
2
0
26 Jun 2024
Efficient Mixture Learning in Black-Box Variational Inference
A. Hotti
Oskar Kviman
Ricky Molén
Victor Elvira
Jens Lagergren
331
2
0
11 Jun 2024
ARTree: A Deep Autoregressive Model for Phylogenetic Inference
Tianyu Xie
Cheng Zhang
228
8
0
14 Oct 2023
Improved Variational Bayesian Phylogenetic Inference using Mixtures
Oskar Kviman
Ricky Molén
Jens Lagergren
237
6
0
02 Oct 2023
GeoPhy: Differentiable Phylogenetic Inference via Geometric Gradients of Tree Topologies
Neural Information Processing Systems (NeurIPS), 2023
Takahiro Mimori
Michiaki Hamada
350
15
0
07 Jul 2023
Learnable Topological Features for Phylogenetic Inference via Graph Neural Networks
International Conference on Learning Representations (ICLR), 2023
Cheng Zhang
220
19
0
17 Feb 2023
Prior Density Learning in Variational Bayesian Phylogenetic Parameters Inference
RECOMB Comparative Genomics Satellite Conference (RECOMB-CG), 2023
Amine M. Remita
Golrokh Vitae
Abdoulaye Baniré Diallo
BDL
297
0
0
06 Feb 2023
TreeFlow: probabilistic programming and automatic differentiation for phylogenetics
Christiaan J. Swanepoel
Mathieu Fourment
Xiang Ji
Hassan Nasif
M. Suchard
IV FrederickAMatsen
A. Drummond
AI4CE
201
4
0
09 Nov 2022
EvoVGM: a Deep Variational Generative Model for Evolutionary Parameter Estimation
ACM International Conference on Bioinformatics, Computational Biology and Biomedicine (ACM-BCB), 2022
Amine M. Remita
Abdoulaye Baniré Diallo
BDL
213
0
0
25 May 2022
A Variational Approach to Bayesian Phylogenetic Inference
Journal of machine learning research (JMLR), 2022
Cheng Zhang
IV FrederickA.Matsen
BDL
203
23
0
16 Apr 2022
VaiPhy: a Variational Inference Based Algorithm for Phylogeny
Neural Information Processing Systems (NeurIPS), 2022
Hazal Koptagel
Oskar Kviman
Harald Melin
Negar Safinianaini
J. Lagergren
275
23
0
01 Mar 2022
Multiple Importance Sampling ELBO and Deep Ensembles of Variational Approximations
International Conference on Artificial Intelligence and Statistics (AISTATS), 2022
Oskar Kviman
Harald Melin
Hazal Koptagel
Victor Elvira
J. Lagergren
DRL
242
19
0
22 Feb 2022
Variational Combinatorial Sequential Monte Carlo Methods for Bayesian Phylogenetic Inference
Conference on Uncertainty in Artificial Intelligence (UAI), 2021
A. Moretti
Liyi Zhang
C. A. Naesseth
Hadiah K Venner
David M. Blei
I. Pe’er
BDL
328
17
0
31 May 2021
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