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A Deep-Learning Approach For Direct Whole-Heart Mesh Reconstruction
v1v2 (latest)

A Deep-Learning Approach For Direct Whole-Heart Mesh Reconstruction

16 February 2021
Fanwei Kong
N. Wilson
S. Shadden
    MedImAI4CE
ArXiv (abs)PDFHTMLGithub (86★)

Papers citing "A Deep-Learning Approach For Direct Whole-Heart Mesh Reconstruction"

37 / 37 papers shown
PrIntMesh: Precise Intersection Surfaces for 3D Organ Mesh Reconstruction
PrIntMesh: Precise Intersection Surfaces for 3D Organ Mesh Reconstruction
Deniz Sayin Mercadier
Hieu M. Le
Yihong Chen
Jiancheng Yang
Udaranga Wickramasinghe
Pascal Fua
107
0
0
20 Nov 2025
FEAorta: A Fully Automated Framework for Finite Element Analysis of the Aorta From 3D CT Images
FEAorta: A Fully Automated Framework for Finite Element Analysis of the Aorta From 3D CT Images
Jiasong Chen
Linchen Qian
Ruonan Gong
Christina Sun
Tongran Qin
...
Caitlin Martin
Mohammad Zafar
John Elefteriades
Wei Sun
Liang Liang
AI4CE
91
0
0
08 Oct 2025
From 2D to 3D, Deep Learning-based Shape Reconstruction in Magnetic Resonance Imaging: A Review
From 2D to 3D, Deep Learning-based Shape Reconstruction in Magnetic Resonance Imaging: A Review
Emma McMillian
Abhirup Banerjee
Alfonso Bueno-Orovio
3DV
209
0
0
01 Oct 2025
End-to-End 4D Heart Mesh Recovery Across Full-Stack and Sparse Cardiac MRI
End-to-End 4D Heart Mesh Recovery Across Full-Stack and Sparse Cardiac MRI
Yihong Chen
Jiancheng Yang
Deniz Sayin Mercadier
Hieu M. Le
Juerg Schwitter
Pascal Fua
144
1
0
15 Sep 2025
End-to-End Learning of Multi-Organ Implicit Surfaces from 3D Medical Imaging Data
End-to-End Learning of Multi-Organ Implicit Surfaces from 3D Medical Imaging Data
Farahdiba Zarin
N. Padoy
Jérémy Dana
V. Srivastav
3DV
194
0
0
15 Sep 2025
3D Cardiac Anatomy Generation Using Mesh Latent Diffusion Models
3D Cardiac Anatomy Generation Using Mesh Latent Diffusion Models
Jolanta Mozyrska
M. Beetz
Luke Melas-Kyriazi
Vicente Grau
Abhirup Banerjee
Alfonso Bueno-Orovio
DiffMMedImAI4CE
162
1
0
18 Aug 2025
LV-Net: Anatomy-aware lateral ventricle shape modeling with a case study on Alzheimer's disease
LV-Net: Anatomy-aware lateral ventricle shape modeling with a case study on Alzheimer's disease
Wonjung Park
Suhyun Ahn
Jinah Park
176
0
0
08 Aug 2025
Personalized 4D Whole Heart Geometry Reconstruction from Cine MRI for Cardiac Digital Twins
Personalized 4D Whole Heart Geometry Reconstruction from Cine MRI for Cardiac Digital Twins
Xiaoyue Liu
Xicheng Sheng
Xiahai Zhuang
Vicente Grau
Mark YY Chan
Ching-Hui Sia
Lei Li
143
1
0
21 Jul 2025
DeformCL: Learning Deformable Centerline Representation for Vessel Extraction in 3D Medical Image
DeformCL: Learning Deformable Centerline Representation for Vessel Extraction in 3D Medical ImageComputer Vision and Pattern Recognition (CVPR), 2025
Ziwei Zhao
Zhixing Zhang
Yuhang Liu
Zhao Zhang
Haojun Yu
Dong Wang
Liwei Wang
MedIm
209
4
0
06 Jun 2025
Cardiac Digital Twins at Scale from MRI: Open Tools and Representative Models from ~55000 UK Biobank Participants
Cardiac Digital Twins at Scale from MRI: Open Tools and Representative Models from ~55000 UK Biobank ParticipantsPLoS ONE (PLoS ONE), 2025
Devran Ugurlu
Shuang Qian
Elliot Fairweather
C. Mauger
B. Ruijsink
...
Reza Razavi
Alistair Young
Pablo Lamata
Steven A Niederer
Martin Bishop
320
8
0
27 May 2025
From Pixels to Polygons: A Survey of Deep Learning Approaches for Medical Image-to-Mesh Reconstruction
From Pixels to Polygons: A Survey of Deep Learning Approaches for Medical Image-to-Mesh Reconstruction
Fengming Lin
Arezoo Zakeri
Yidan Xue
Michael MacRaild
Haoran Dou
Zherui Zhou
Ziwei Zou
Ali Sarrami-Foroushani
Yanfu Zhang
Alejandro F Frangi
3DVMedIm
336
2
0
06 May 2025
AI-Powered Automated Model Construction for Patient-Specific CFD Simulations of Aortic Flows
AI-Powered Automated Model Construction for Patient-Specific CFD Simulations of Aortic FlowsScience Advances (Sci Adv), 2025
P. Du
Delin An
Chaoli Wang
Jian-Xun Wang
MedImAI4CE
265
8
0
16 Mar 2025
Relational Anatomical Supervision for Accurate 3D Multi-Chamber Cardiac Mesh Reconstruction
Relational Anatomical Supervision for Accurate 3D Multi-Chamber Cardiac Mesh Reconstruction
Chenyu Zhang
Yihao Luo
Yinzhe Wu
Choon Hwai Yap
Guang Yang
Guang Yang
366
1
0
10 Mar 2025
SeqSeg: Learning Local Segments for Automatic Vascular Model Construction
SeqSeg: Learning Local Segments for Automatic Vascular Model ConstructionAnnals of Biomedical Engineering (Ann Biomed Eng), 2024
Numi Sveinsson Cepero
Shawn C. Shadden
235
5
0
28 Jan 2025
MorphiNet: A Graph Subdivision Network for Adaptive Bi-ventricle Surface Reconstruction
MorphiNet: A Graph Subdivision Network for Adaptive Bi-ventricle Surface Reconstruction
Yu Deng
Yiyang Xu
Linglong Qian
C. Mauger
Anastasia Nasopoulou
...
D. Newby
Andrew McCulloch
Jeff Omens
Kuberan Pushprajah
Alistair Young
344
0
0
14 Dec 2024
Explicit Differentiable Slicing and Global Deformation for Cardiac Mesh
  Reconstruction
Explicit Differentiable Slicing and Global Deformation for Cardiac Mesh Reconstruction
Yihao Luo
Dario Sesia
Fanwen Wang
Yinzhe Wu
Wenhao Ding
...
Amit Kaural
Jamil Mayet
Jamil Mayet
ChoonHwai Yap
ChoonHwai Yap
274
6
0
03 Sep 2024
$R^2$-Mesh: Reinforcement Learning Powered Mesh Reconstruction via Geometry and Appearance Refinement
R2R^2R2-Mesh: Reinforcement Learning Powered Mesh Reconstruction via Geometry and Appearance Refinement
Haoyang Wang
Liming Liu
Quanlu Jia
250
0
0
19 Aug 2024
Improved 3D Whole Heart Geometry from Sparse CMR Slices
Improved 3D Whole Heart Geometry from Sparse CMR Slices
Yiyang Xu
Hao Xu
Matthew Sinclair
Esther Puyol-Antón
Steven Niederer
A. Chiribiri
Steven E. Williams
Michelle C Williams
Alistair A Young
335
5
0
14 Aug 2024
Attention-based Shape-Deformation Networks for Artifact-Free Geometry
  Reconstruction of Lumbar Spine from MR Images
Attention-based Shape-Deformation Networks for Artifact-Free Geometry Reconstruction of Lumbar Spine from MR Images
Linchen Qian
Jiasong Chen
Linhai Ma
Timur Urakov
Weiyong Gu
Liang Liang
MedIm
353
3
0
30 Mar 2024
Robust automated calcification meshing for biomechanical cardiac digital
  twins
Robust automated calcification meshing for biomechanical cardiac digital twins
Daniel H. Pak
Minliang Liu
Theodore Kim
C. Ozturk
Raymond McKay
Ellen T. Roche
Rudolph L. Gleason
James S. Duncan
AI4CE
282
2
0
08 Mar 2024
Graph Convolutional Neural Networks for Automated Echocardiography View
  Recognition: A Holistic Approach
Graph Convolutional Neural Networks for Automated Echocardiography View Recognition: A Holistic Approach
Sarina Thomas
Cristiana Tiago
Børge Solli Andreassen
S. Aase
Jurica Šprem
Erik Normann Steen
Anne H. Schistad Solberg
Guy Ben-Yosef
342
1
0
29 Feb 2024
Image2Flow: A hybrid image and graph convolutional neural network for
  rapid patient-specific pulmonary artery segmentation and CFD flow field
  calculation from 3D cardiac MRI data
Image2Flow: A hybrid image and graph convolutional neural network for rapid patient-specific pulmonary artery segmentation and CFD flow field calculation from 3D cardiac MRI data
Tina Yao
E. Pajaziti
Michael Quail
Silvia Schievano
J. Steeden
V. Muthurangu
MedIm
272
10
0
28 Feb 2024
Neural deformation fields for template-based reconstruction of cortical
  surfaces from MRI
Neural deformation fields for template-based reconstruction of cortical surfaces from MRI
Fabian Bongratz
Anne-Marie Rickmann
Christian Wachinger
436
22
0
23 Jan 2024
Reconstruction of Cortical Surfaces with Spherical Topology from Infant
  Brain MRI via Recurrent Deformation Learning
Reconstruction of Cortical Surfaces with Spherical Topology from Infant Brain MRI via Recurrent Deformation Learning
Xiaoyang Chen
Junjie Zhao
Siyuan Liu
Sahar Ahmad
P. Yap
236
0
0
10 Dec 2023
Intelligent Generation of Graphical Game Assets: A Conceptual Framework
  and Systematic Review of the State of the Art
Intelligent Generation of Graphical Game Assets: A Conceptual Framework and Systematic Review of the State of the Art
Kaisei Fukaya
Damon Daylamani-Zad
Harry Agius
409
7
0
16 Nov 2023
LinFlo-Net: A two-stage deep learning method to generate simulation
  ready meshes of the heart
LinFlo-Net: A two-stage deep learning method to generate simulation ready meshes of the heartJournal of Biomechanical Engineering (J Biomech Eng), 2023
Arjun Narayanan
Fanwei Kong
S. Shadden
MedImAI4CE3DH
350
6
0
30 Oct 2023
Shape of my heart: Cardiac models through learned signed distance
  functions
Shape of my heart: Cardiac models through learned signed distance functionsInternational Conference on Medical Imaging with Deep Learning (MIDL), 2023
Jan Verhulsdonk
Thomas Grandits
F. Sahli Costabal
Thomas Pinetz
Rolf Krause
A. Auricchio
Gundolf Haase
Simone Pezzuto
Alexander Effland
398
11
0
31 Aug 2023
4D Myocardium Reconstruction with Decoupled Motion and Shape Model
4D Myocardium Reconstruction with Decoupled Motion and Shape ModelIEEE International Conference on Computer Vision (ICCV), 2023
Xiaohan Yuan
Cong Liu
Yangang Wang
423
9
0
27 Aug 2023
Abdominal organ segmentation via deep diffeomorphic mesh deformations
Abdominal organ segmentation via deep diffeomorphic mesh deformationsScientific Reports (Sci Rep), 2023
Fabian Bongratz
Anne-Marie Rickmann
Christian Wachinger
247
15
0
27 Jun 2023
Learning Reduced-Order Models for Cardiovascular Simulations with Graph
  Neural Networks
Learning Reduced-Order Models for Cardiovascular Simulations with Graph Neural Networks
Luca Pegolotti
Martin R. Pfaller
Natalia L. Rubio
Ke Ding
Rita Brugarolas Brufau
Eric F. Darve
Alison L. Marsden
AI4CE
222
60
0
13 Mar 2023
Spatial Correspondence between Graph Neural Network-Segmented Images
Spatial Correspondence between Graph Neural Network-Segmented ImagesInternational Conference on Medical Imaging with Deep Learning (MIDL), 2023
Qian Li
Yunguan Fu
Qianye Yang
Z. Du
Hongjian Yu
Yipeng Hu
185
1
0
12 Mar 2023
3D Coronary Vessel Reconstruction from Bi-Plane Angiography using Graph
  Convolutional Networks
3D Coronary Vessel Reconstruction from Bi-Plane Angiography using Graph Convolutional NetworksIEEE International Symposium on Biomedical Imaging (ISBI), 2023
Kit M. Bransby
V. Tufaro
M. Çap
Greg Slabaugh
Christos Bourantas
Qianni Zhang
3DPC
209
10
0
28 Feb 2023
Learning Whole Heart Mesh Generation From Patient Images For
  Computational Simulations
Learning Whole Heart Mesh Generation From Patient Images For Computational SimulationsIEEE Transactions on Medical Imaging (IEEE TMI), 2022
Fanwei Kong
S. Shadden
3DHMedImAI4CE
317
41
0
20 Mar 2022
Vox2Cortex: Fast Explicit Reconstruction of Cortical Surfaces from 3D
  MRI Scans with Geometric Deep Neural Networks
Vox2Cortex: Fast Explicit Reconstruction of Cortical Surfaces from 3D MRI Scans with Geometric Deep Neural NetworksComputer Vision and Pattern Recognition (CVPR), 2022
Fabian Bongratz
Anne-Marie Rickmann
Sebastian Polsterl
Christian Wachinger
3DV
311
51
0
17 Mar 2022
Modeling and hexahedral meshing of cerebral arterial networks from
  centerlines
Modeling and hexahedral meshing of cerebral arterial networks from centerlines
Méghane Decroocq
Carole Frindel
Pierre Rougé
M. Ohta
Guillaume Lavoué
AI4CE
195
9
0
20 Jan 2022
Robust Voxelization and Visualization by Improved Tetrahedral Mesh
  Generation
Robust Voxelization and Visualization by Improved Tetrahedral Mesh Generation
Joseph Chen
K. Tai
Wen-Chin Chen
M. Ouhyoung
330
2
0
02 Jun 2021
Adversarial Attack Vulnerability of Medical Image Analysis Systems:
  Unexplored Factors
Adversarial Attack Vulnerability of Medical Image Analysis Systems: Unexplored Factors
Gerda Bortsova
C. González-Gonzalo
S. Wetstein
Florian Dubost
Ioannis Katramados
...
Bram van Ginneken
J. Pluim
M. Veta
Clara I. Sánchez
Marleen de Bruijne
AAMLMedIm
182
156
0
11 Jun 2020
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