UNETR: Transformers for 3D Medical Image Segmentation

18 March 2021

Andriy Myronenko

Papers citing "UNETR: Transformers for 3D Medical Image Segmentation"

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Title
E2ENet: Dynamic Sparse Feature Fusion for Accurate and Efficient 3D Medical Image Segmentation Boqian Wu Q. Xiao Shiwei Liu Lu Yin Mykola Pechenizkiy D. Mocanu M. V. Keulen Elena Mocanu MedIm 53 4 0 20 Feb 2025
Self-Prompt SAM: Medical Image Segmentation via Automatic Prompt SAM Adaptation Bin Xie Hao Tang Dawen Cai Yan Yan Gady Agam MedIm VLM 50 1 0 02 Feb 2025
Motion-enhancement to Echocardiography Segmentation via Inserting a Temporal Attention Module: An Efficient, Adaptable, and Scalable Approach M. Hasan Guang Yang Choon Hwai Yap 39 0 0 28 Jan 2025
GAMED-Snake: Gradient-aware Adaptive Momentum Evolution Deep Snake Model for Multi-organ Segmentation Ruicheng Zhang Haowei Guo Zeyu Zhang Puxin Yan Shen Zhao 76 5 0 22 Jan 2025
A generalizable 3D framework and model for self-supervised learning in medical imaging Tony Xu Sepehr Hosseini Chris Anderson Anthony Rinaldi Rahul G. Krishnan Anne L. Martel Maged Goubran MedIm 45 3 0 20 Jan 2025
Few-Shot Adaptation of Training-Free Foundation Model for 3D Medical Image Segmentation Xingxin He Yifan Hu Zhaoye Zhou Mohamed Jarraya Fang Liu VLM MedIm 42 2 0 17 Jan 2025
Self Pre-training with Adaptive Mask Autoencoders for Variable-Contrast 3D Medical Imaging B. K. Das Gengyan Zhao Han Liu Thomas J. Re D. Comaniciu Eli Gibson Andreas K. Maier ViT MedIm 57 1 0 15 Jan 2025
Open-Source Manually Annotated Vocal Tract Database for Automatic Segmentation from 3D MRI Using Deep Learning: Benchmarking 2D and 3D Convolutional and Transformer Networks Subin Erattakulangara Karthika Kelat Katie Burnham Rachel Balbi Sarah E. Gerard David Meyer Sajan Goud Lingala 40 1 0 08 Jan 2025
LoVA: Long-form Video-to-Audio Generation Xin Cheng Xihua Wang Yihan Wu Yuyue Wang Ruihua Song VGen DiffM 43 2 0 31 Dec 2024
PT: A Plain Transformer is Good Hospital Readmission Predictor Zhenyi Fan Jiaqi Li Dongyu Luo Yuqi Yuan 70 0 0 17 Dec 2024
SegHeD+: Segmentation of Heterogeneous Data for Multiple Sclerosis Lesions with Anatomical Constraints and Lesion-aware Augmentation Berke Doga Basaran Paul M. Matthews Wenjia Bai 73 0 0 14 Dec 2024
SAM-Mamba: Mamba Guided SAM Architecture for Generalized Zero-Shot Polyp Segmentation Tapas Kumar Dutta Snehashis Majhi Deepak Ranjan Nayak Debesh Jha Mamba 80 0 0 11 Dec 2024
A4-Unet: Deformable Multi-Scale Attention Network for Brain Tumor Segmentation Ruoxin Wang Tianyi Tang Haiming Du Yuxuan Cheng Yu Wang Lingjie Yang Xiaohui Duan Yunfang Yu Yu Zhou Donglong Chen 54 0 0 08 Dec 2024
Distilling Spectral Graph for Object-Context Aware Open-Vocabulary Semantic Segmentation Chanyoung Kim Dayun Ju Woojung Han Ming-Hsuan Yang Seong Jae Hwang VLM VOS 74 0 0 26 Nov 2024
vesselFM: A Foundation Model for Universal 3D Blood Vessel Segmentation Bastian Wittmann Yannick Wattenberg Tamaz Amiranashvili Suprosanna Shit Bjoern H. Menze 81 3 0 26 Nov 2024
MulModSeg: Enhancing Unpaired Multi-Modal Medical Image Segmentation with Modality-Conditioned Text Embedding and Alternating Training Chengyin Li Hui Zhu Rafi Ibn Sultan H. Bagher-Ebadian Prashant Khanduri Chetty Indrin Kundan Thind Dongxiao Zhu MedIm 80 1 0 23 Nov 2024
CP-UNet: Contour-based Probabilistic Model for Medical Ultrasound Images Segmentation Ruiguo Yu Yiyang Zhang Yuan Tian Zhiqiang Liu Xuewei Li Jie Gao 62 0 0 21 Nov 2024
Sli2Vol+: Segmenting 3D Medical Images Based on an Object Estimation Guided Correspondence Flow Network Delin An Pengfei Gu Milan Sonka Chaoli Wang D. Z. Chen 74 1 0 21 Nov 2024
FIAS: Feature Imbalance-Aware Medical Image Segmentation with Dynamic Fusion and Mixing Attention Xiwei Liu Min Xu Qirong Ho MedIm 28 0 0 16 Nov 2024
MLV $^2$ -Net: Rater-Based Majority-Label Voting for Consistent Meningeal Lymphatic Vessel Segmentation Fabian Bongratz Markus Karmann Adrian Holz Moritz Bonhoeffer Viktor Neumaier ... Claus Zimmer C. Sorg Melissa Thalhammer D. Hedderich Christian Wachinger 35 0 0 13 Nov 2024
Personalize to generalize: Towards a universal medical multi-modality generalization through personalization Zhaorui Tan Xi Yang Tan Pan Tianyi Liu Chen Jiang ... Qiufeng Wang Anh Nguyen Yuan Qi K. Huang Yuan-Chia Cheng AI4CE LM&MA 34 0 0 09 Nov 2024
TransUNext: towards a more advanced U-shaped framework for automatic vessel segmentation in the fundus image Xiang Li Mingsi Liu Lixin Duan ViT MedIm 29 0 0 05 Nov 2024
ShadowMamba: State-Space Model with Boundary-Region Selective Scan for Shadow Removal Xiujin Zhu Chee-Onn Chow Joon Huang Chuah Mamba 40 0 0 05 Nov 2024
A lightweight Convolutional Neural Network based on U shape structure and Attention Mechanism for Anterior Mediastinum Segmentation Sina Soleimani-Fard Won Gi Jeong Francis Ferri Ripalda Hasti Sasani Younhee Choi S Deiva Gong Yong Jin Seok-bum Ko 27 0 0 01 Nov 2024
Topology and Intersection-Union Constrained Loss Function for Multi-Region Anatomical Segmentation in Ocular Images Ruiyu Xia Jianqiang Li Xi Xu Guanghui Fu 34 0 0 01 Nov 2024
MLLA-UNet: Mamba-like Linear Attention in an Efficient U-Shape Model for Medical Image Segmentation Yufeng Jiang Zongxi Li Xiangyan Chen Haoran Xie Jing Cai Mamba 37 1 0 31 Oct 2024
EchoFM: Foundation Model for Generalizable Echocardiogram Analysis Sekeun Kim Pengfei Jin S. Song Cheng Chen Yiwei Li Hui Ren Xiang Li Tianming Liu Quanzheng Li 39 0 0 30 Oct 2024
Compositional Segmentation of Cardiac Images Leveraging Metadata Abbas Khan Muhammad Asad Martin Benning C. Roney Gregory Slabaugh 31 0 0 30 Oct 2024
MAPUNetR: A Hybrid Vision Transformer and U-Net Architecture for Efficient and Interpretable Medical Image Segmentation Ovais Iqbal Shah Danish Raza Rizvi Aqib Nazir Mir ViT MedIm 28 1 0 29 Oct 2024
FANCL: Feature-Guided Attention Network with Curriculum Learning for Brain Metastases Segmentation Zijiang Liu Xiaoyu Liu Linhao Qu Yonghong Shi MedIm 21 0 0 29 Oct 2024
Advancing Efficient Brain Tumor Multi-Class Classification -- New Insights from the Vision Mamba Model in Transfer Learning Yinyi Lai Anbo Cao Yuan Gao Jiaqi Shang Zongyu Li Jia Guo Mamba 29 1 0 29 Oct 2024
SFB-net for cardiac segmentation: Bridging the semantic gap with attention Nicolas Portal Nadjia Kachenoura Thomas Dietenbeck Catherine Achard 33 0 0 24 Oct 2024
Taming Mambas for Voxel Level 3D Medical Image Segmentation Luca Lumetti Vittorio Pipoli Kevin Marchesini Elisa Ficarra C. Grana Federico Bolelli MedIm Mamba 29 0 0 20 Oct 2024
Improving 3D Medical Image Segmentation at Boundary Regions using Local Self-attention and Global Volume Mixing Daniya Najiha Abdul Kareem M. Fiaz Noa Novershtern Jacob Hanna Hisham Cholakkal 34 3 0 20 Oct 2024
UniCoN: Universal Conditional Networks for Multi-Age Embryonic Cartilage Segmentation with Sparsely Annotated Data Nishchal Sapkota Yejia Zhang Zihao Zhao Maria Gomez Yuhan Hsi ... Meng Wu E. Jabs J. Richtsmeier S. M. Perrine D. Z. Chen AI4CE 23 0 0 16 Oct 2024
UMambaAdj: Advancing GTV Segmentation for Head and Neck Cancer in MRI-Guided RT with UMamba and nnU-Net ResEnc Planner Jintao Ren Kim Hochreuter Jesper Folsted Kallehauge Stine Korreman Mamba 24 1 0 16 Oct 2024
EchoApex: A General-Purpose Vision Foundation Model for Echocardiography A. Amadou Y. Zhang Sebastien Piat Paul Klein Ingo Schmuecking Tiziano Passerini Puneet Sharma 14 5 0 14 Oct 2024
Multi-modal Vision Pre-training for Medical Image Analysis Shaohao Rui Lingzhi Chen Zhenyu Tang Lilong Wang M. Liu S. Zhang Xiaosong Wang 32 0 0 14 Oct 2024
Large-Scale 3D Medical Image Pre-training with Geometric Context Priors Linshan Wu Jiaxin Zhuang Hao Chen 39 5 0 13 Oct 2024
ICPR 2024 Competition on Multiple Sclerosis Lesion Segmentation -- Methods and Results Alessia Rondinella Francesco Guarnera Elena Crispino G. Russo Clara Di Lorenzo Davide Maimone F. Pappalardo S. Battiato 24 3 0 10 Oct 2024
Towards Real-time Intrahepatic Vessel Identification in Intraoperative Ultrasound-Guided Liver Surgery Karl-Philippe Beaudet Alexandros Karargyris Sidaty El Hadramy Stéphane Cotin J. Mazellier N. Padoy J. Verde 19 0 0 04 Oct 2024
Clinnova Federated Learning Proof of Concept: Key Takeaways from a Cross-border Collaboration Julia Alekseenko B. Stieltjes Michael Bach Melanie Boerries Oliver Opitz Alexandros Karargyris N. Padoy FedML AI4CE 28 0 0 03 Oct 2024
SynCo: Synthetic Hard Negatives in Contrastive Learning for Better Unsupervised Visual Representations Nikolaos Giakoumoglou Tania Stathaki SSL 38 2 0 03 Oct 2024
SegHeD: Segmentation of Heterogeneous Data for Multiple Sclerosis Lesions with Anatomical Constraints Berke Doga Basaran Xinru Zhang Paul M. Matthews Wenjia Bai 32 1 0 02 Oct 2024
Polyp-SES: Automatic Polyp Segmentation with Self-Enriched Semantic Model Quang Vinh Nguyen Thanh Hoang Son Vo Sae-Ryung Kang Soo-Hyung Kim 29 0 0 02 Oct 2024
Y-CA-Net: A Convolutional Attention Based Network for Volumetric Medical Image Segmentation Muhammad Hamza Sharif Muzammal Naseer Mohammad Yaqub Min Xu Mohsen Guizani OOD MedIm ViT 25 0 0 01 Oct 2024
Toward Deep Learning-based Segmentation and Quantitative Analysis of Cervical Spinal Cord Magnetic Resonance Images Maryam Tavakol Elahi 21 0 0 28 Sep 2024
EM-Net: Efficient Channel and Frequency Learning with Mamba for 3D Medical Image Segmentation Ao Chang Jiajun Zeng Ruobing Huang Dong Ni Mamba 27 2 0 26 Sep 2024
MorphoSeg: An Uncertainty-Aware Deep Learning Method for Biomedical Segmentation of Complex Cellular Morphologies Tianhao Zhang Heather J. McCourty Berardo M. Sanchez-Tafolla Anton Nikolaev Lyudmila Mihaylova 19 0 0 25 Sep 2024
Going Beyond U-Net: Assessing Vision Transformers for Semantic Segmentation in Microscopy Image Analysis Illia Tsiporenko Pavel Chizhov Dmytro Fishman ViT MedIm 29 1 0 25 Sep 2024