Variational Combinatorial Sequential Monte Carlo Methods for Bayesian
Phylogenetic Inference

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Variational Combinatorial Sequential Monte Carlo Methods for Bayesian Phylogenetic Inference

31 May 2021

Hadiah K Venner

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Papers citing "Variational Combinatorial Sequential Monte Carlo Methods for Bayesian Phylogenetic Inference"

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Title
Variational Combinatorial Sequential Monte Carlo for Bayesian Phylogenetics in Hyperbolic Space Alex Chen Philipe Chlenski Kenneth Munyuza A. Moretti C. A. Naesseth I. Pe’er 73 0 0 29 Jan 2025
Variational Pseudo Marginal Methods for Jet Reconstruction in Particle Physics Hanming Yang A. Moretti Sebastian Macaluso Philippe Chlenski C. A. Naesseth I. Pe’er BDL 147 1 0 03 Jan 2025
Torchtree: flexible phylogenetic model development and inference using PyTorch Mathieu Fourment Matthew Macaulay Christiaan J. Swanepoel Xiang Ji M. Suchard Frederick A Matsen IV BDL 91 0 0 26 Jun 2024
Efficient Mixture Learning in Black-Box Variational Inference A. Hotti Oskar Kviman Ricky Molén Victor Elvira Jens Lagergren 80 1 0 11 Jun 2024
Orchard: building large cancer phylogenies using stochastic combinatorial search E. Kulman R. Kuang Q. Morris 53 4 0 21 Nov 2023
ARTree: A Deep Autoregressive Model for Phylogenetic Inference Tianyu Xie Cheng Zhang 42 4 0 14 Oct 2023
PhyloGFN: Phylogenetic inference with generative flow networks Mingyang Zhou Zichao Yan Elliot Layne Nikolay Malkin Dinghuai Zhang Moksh Jain Mathieu Blanchette Yoshua Bengio 74 18 0 12 Oct 2023
Improved Variational Bayesian Phylogenetic Inference using Mixtures Oskar Kviman Ricky Molén Jens Lagergren 39 5 0 02 Oct 2023
Sequential Monte Carlo Learning for Time Series Structure Discovery Feras A. Saad Brian Patton Matt Hoffman Rif A. Saurous Vikash K. Mansinghka AI4TS 51 11 0 13 Jul 2023
GeoPhy: Differentiable Phylogenetic Inference via Geometric Gradients of Tree Topologies Takahiro Mimori Michiaki Hamada 77 11 0 07 Jul 2023
VaiPhy: a Variational Inference Based Algorithm for Phylogeny Hazal Koptagel Oskar Kviman Harald Melin Negar Safinianaini J. Lagergren 65 19 0 01 Mar 2022