VaiPhy: a Variational Inference Based Algorithm for Phylogeny

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VaiPhy: a Variational Inference Based Algorithm for Phylogeny

1 March 2022

Negar Safinianaini

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Papers citing "VaiPhy: a Variational Inference Based Algorithm for Phylogeny"

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Title
Variational Combinatorial Sequential Monte Carlo for Bayesian Phylogenetics in Hyperbolic Space Alex Chen Philipe Chlenski Kenneth Munyuza A. Moretti C. A. Naesseth I. Pe’er 73 0 0 29 Jan 2025
RapGuard: Safeguarding Multimodal Large Language Models via Rationale-aware Defensive Prompting Yilei Jiang Yingshui Tan Xiangyu Yue KELM LRM 141 10 0 25 Dec 2024
Variational Bayesian Phylogenetic Inference with Semi-implicit Branch Length Distributions Tianyu Xie Frederick A. Matsen IV M. Suchard Cheng Zhang 49 1 0 09 Aug 2024
Torchtree: flexible phylogenetic model development and inference using PyTorch Mathieu Fourment Matthew Macaulay Christiaan J. Swanepoel Xiang Ji M. Suchard Frederick A Matsen IV BDL 91 0 0 26 Jun 2024
ARTree: A Deep Autoregressive Model for Phylogenetic Inference Tianyu Xie Cheng Zhang 42 4 0 14 Oct 2023
PhyloGFN: Phylogenetic inference with generative flow networks Mingyang Zhou Zichao Yan Elliot Layne Nikolay Malkin Dinghuai Zhang Moksh Jain Mathieu Blanchette Yoshua Bengio 74 18 0 12 Oct 2023
Improved Variational Bayesian Phylogenetic Inference using Mixtures Oskar Kviman Ricky Molén Jens Lagergren 39 5 0 02 Oct 2023
GeoPhy: Differentiable Phylogenetic Inference via Geometric Gradients of Tree Topologies Takahiro Mimori Michiaki Hamada 77 11 0 07 Jul 2023
Cooperation in the Latent Space: The Benefits of Adding Mixture Components in Variational Autoencoders Oskar Kviman Ricky Molén A. Hotti Semih Kurt Victor Elvira J. Lagergren 73 11 0 30 Sep 2022