Accelerating Bayesian Optimization for Biological Sequence Design with
Denoising Autoencoders

Accelerating Bayesian Optimization for Biological Sequence Design with Denoising Autoencoders

23 March 2022

Wesley J. Maddox

Phillip M. Maffettone

Peyton Greenside

Papers citing "Accelerating Bayesian Optimization for Biological Sequence Design with Denoising Autoencoders"

13 / 63 papers shown

Title
Protein Sequence Design with Batch Bayesian Optimisation Chuanjiao Zong 11 0 0 18 Mar 2023
GAUCHE: A Library for Gaussian Processes in Chemistry Ryan-Rhys Griffiths Leo Klarner Henry B. Moss Aditya Ravuri Sang T. Truong ... A. Lee Bingqing Cheng Alán Aspuru-Guzik P. Schwaller Jian Tang GP 16 40 0 06 Dec 2022
Multi-Objective GFlowNets Moksh Jain Sharath Chandra Raparthy Alex Hernandez-Garcia Jarrid Rector-Brooks Yoshua Bengio Santiago Miret Emmanuel Bengio 12 86 0 23 Oct 2022
Bayesian Optimization with Conformal Prediction Sets Samuel Stanton Wesley J. Maddox A. Wilson 27 24 0 22 Oct 2022
Conditional Diffusion with Less Explicit Guidance via Model Predictive Control Max W. Shen Ehsan Hajiramezanali Gabriele Scalia Alex Tseng N. Diamant Tommaso Biancalani Andreas Loukas 26 1 0 21 Oct 2022
Discovering Many Diverse Solutions with Bayesian Optimization N. Maus Kaiwen Wu David Eriksson J. Gardner 6 23 0 20 Oct 2022
PropertyDAG: Multi-objective Bayesian optimization of partially ordered, mixed-variable properties for biological sequence design Ji Won Park Samuel Stanton Saeed Saremi Andrew Watkins Henri Dwyer Vladimir Gligorijević Richard Bonneau Stephen Ra Kyunghyun Cho 14 11 0 08 Oct 2022
Generalizing Bayesian Optimization with Decision-theoretic Entropies W. Neiswanger Lantao Yu Shengjia Zhao Chenlin Meng Stefano Ermon UQCV 24 11 0 04 Oct 2022
Graph Neural Network Bandits Parnian Kassraie Andreas Krause Ilija Bogunovic 11 11 0 13 Jul 2022
Is an encoder within reach? Helene Hauschultz Rasmus Berg Palm. Pablo Moreno-Munos N. Detlefsen A. Plessis Søren Hauberg 14 0 0 03 Jun 2022
AntBO: Towards Real-World Automated Antibody Design with Combinatorial Bayesian Optimisation M. A. Khan Alexander I. Cowen-Rivers Antoine Grosnit Derrick-Goh-Xin Deik Philippe A. Robert ... Rasul Tutunov Dany Bou-Ammar Jun Wang Amos Storkey Haitham Bou-Ammar 40 22 0 29 Jan 2022
Local Latent Space Bayesian Optimization over Structured Inputs N. Maus Haydn Jones Juston Moore Matt J. Kusner John Bradshaw J. Gardner BDL 47 69 0 28 Jan 2022
Junction Tree Variational Autoencoder for Molecular Graph Generation Wengong Jin Regina Barzilay Tommi Jaakkola 208 1,205 0 12 Feb 2018