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Metrics reloaded: Recommendations for image analysis validation

Metrics reloaded: Recommendations for image analysis validation

3 June 2022
Lena Maier-Hein
Annika Reinke
Patrick Godau
M. Tizabi
Florian Buettner
E. Christodoulou
Ben Glocker
Fabian Isensee
Jens Kleesiek
Michal Kozubek
M. Reyes
Michael A. Riegler
Manuel Wiesenfarth
A. Emre Kavur
Carole H. Sudre
Michael Baumgartner
Matthias Eisenmann
Doreen Heckmann-Notzel
Tim Radsch
Laura Acion
Michela Antonelli
Tal Arbel
Spyridon Bakas
Allison Benis
P. Bankhead
M. Jorge Cardoso
V. Cheplygina
Beth A. Cimini
Gary S. Collins
Keyvan Farahani
Luciana Ferrer
Adrian Galdran
Bram van Ginneken
Robert Haase
Daniel A. Hashimoto
Michael M. Hoffman
M. Huisman
Pierre Jannin
Charles E. Kahn
Dagmar Kainmueller
Bernhard Kainz
Alexandros Karargyris
Alan Karthikesalingam
H. Kenngott
D. Moher
A. Kopp-Schneider
Anna Kreshuk
Tahsin M. Kurc
Bennett A. Landman
G. Litjens
Amin Madani
Klaus Maier-Hein
Anne L. Martel
Peter Mattson
Erik H. W. Meijering
Bjoern H. Menze
Karel G. M. Moons
Henning Muller
Brennan Nichyporuk
Felix Nickel
Jens Petersen
Nasir M. Rajpoot
Nicola Rieke
Julio Saez-Rodriguez
Clarisa Sánchez Gutiérrez
S. Shetty
Maarten van Smeden
Ronald M. Summers
A. Taha
Aleksei Tiulpin
Sotirios A. Tsaftaris
Ben Van Calster
Gaël Varoquaux
Paul F. Jäger
ArXivPDFHTML

Papers citing "Metrics reloaded: Recommendations for image analysis validation"

50 / 73 papers shown
Title
KEVS: Enhancing Segmentation of Visceral Adipose Tissue in Pre-Cystectomy CT with Gaussian Kernel Density Estimation
KEVS: Enhancing Segmentation of Visceral Adipose Tissue in Pre-Cystectomy CT with Gaussian Kernel Density Estimation
Thomas Boucher
Nicholas Tetlow
Annie Fung
Amy Dewar
Pietro Arina
Sven Kerneis
John Whittle
Evangelos B. Mazomenos
31
0
0
28 Mar 2025
DiffAtlas: GenAI-fying Atlas Segmentation via Image-Mask Diffusion
Hantao Zhang
Yuhe Liu
Jiancheng Yang
Weidong Guo
Xinyuan Wang
Pascal Fua
MedIm
43
0
0
09 Mar 2025
SAS: Segment Anything Small for Ultrasound -- A Non-Generative Data Augmentation Technique for Robust Deep Learning in Ultrasound Imaging
Danielle L. Ferreira
Ahana Gangopadhyay
Hsi-Ming Chang
Ravi Soni
Gopal Avinash
40
0
0
07 Mar 2025
HQColon: A Hybrid Interactive Machine Learning Pipeline for High Quality Colon Labeling and Segmentation
HQColon: A Hybrid Interactive Machine Learning Pipeline for High Quality Colon Labeling and Segmentation
Martina Finocchiaro
Ronja Stern
Abraham George Smith
Jens Petersen
Kenny Erleben
Melanie Ganz
34
0
0
28 Feb 2025
Is Long Range Sequential Modeling Necessary For Colorectal Tumor Segmentation?
Is Long Range Sequential Modeling Necessary For Colorectal Tumor Segmentation?
Abhishek Srivastava
Koushik Biswas
Gorkem Durak
Gulsah Ozden
Mustafa Adli
Ulas Bagci
Mamba
3DV
34
0
0
10 Feb 2025
Efficient MedSAMs: Segment Anything in Medical Images on Laptop
Efficient MedSAMs: Segment Anything in Medical Images on Laptop
Jun Ma
Feifei Li
Sumin Kim
Reza Asakereh
Bao-Hiep Le
...
Hao Wei
Wu Yuan
Shuangle Li
Yuyin Zhou
Bo Wang
VLM
MedIm
80
1
0
20 Dec 2024
SeagrassFinder: Deep Learning for Eelgrass Detection and Coverage Estimation in the Wild
SeagrassFinder: Deep Learning for Eelgrass Detection and Coverage Estimation in the Wild
Jannik Elsäßer
Laura Weihl
Veronika Cheplygina
Lisbeth Tangaa Nielsen
74
0
0
20 Dec 2024
Mask of truth: model sensitivity to unexpected regions of medical images
Mask of truth: model sensitivity to unexpected regions of medical images
Théo Sourget
Michelle Hestbek-Møller
Amelia Jiménez-Sánchez
Jack Junchi Xu
V. Cheplygina
AAML
75
0
0
05 Dec 2024
Denoising Diffusion Models for Anomaly Localization in Medical Images
Denoising Diffusion Models for Anomaly Localization in Medical Images
Cosmin I. Bercea
P. Cattin
Julia A. Schnabel
J. Wolleb
DiffM
MedIm
36
0
0
31 Oct 2024
Every Component Counts: Rethinking the Measure of Success for Medical
  Semantic Segmentation in Multi-Instance Segmentation Tasks
Every Component Counts: Rethinking the Measure of Success for Medical Semantic Segmentation in Multi-Instance Segmentation Tasks
A. Jaus
C. Seibold
Simon Reiß
Zdravko Marinov
Keyi Li
Zeling Ye
Stefan Krieg
Jens Kleesiek
Rainer Stiefelhagen
16
0
0
24 Oct 2024
Topology-Aware Exploration of Circle of Willis for CTA and MRA:
  Segmentation, Detection, and Classification
Topology-Aware Exploration of Circle of Willis for CTA and MRA: Segmentation, Detection, and Classification
Minghui Zhang
Xin You
Hanxiao Zhang
Yun Gu
16
0
0
21 Oct 2024
Taming Mambas for Voxel Level 3D Medical Image Segmentation
Taming Mambas for Voxel Level 3D Medical Image Segmentation
Luca Lumetti
Vittorio Pipoli
Kevin Marchesini
Elisa Ficarra
C. Grana
Federico Bolelli
MedIm
Mamba
22
0
0
20 Oct 2024
Xeno-learning: knowledge transfer across species in deep learning-based
  spectral image analysis
Xeno-learning: knowledge transfer across species in deep learning-based spectral image analysis
Jan Sellner
Alexander Studier-Fischer
Ahmad Bin Qasim
S.
Nicholas Schreck
...
Maximilian Dietrich
Maurice Stephan Michel
Felix Nickel
K. K.
Lena Maier-Hein
MedIm
19
0
0
15 Oct 2024
Metrics Revolutions: Groundbreaking Insights into the Implementation of
  Metrics for Biomedical Image Segmentation
Metrics Revolutions: Groundbreaking Insights into the Implementation of Metrics for Biomedical Image Segmentation
Gašper Podobnik
Tomaž Vrtovec
14
0
0
03 Oct 2024
GaNDLF-Synth: A Framework to Democratize Generative AI for (Bio)Medical
  Imaging
GaNDLF-Synth: A Framework to Democratize Generative AI for (Bio)Medical Imaging
Sarthak Pati
Szymon Mazurek
Spyridon Bakas
MedIm
21
0
0
30 Sep 2024
UU-Mamba: Uncertainty-aware U-Mamba for Cardiovascular Segmentation
UU-Mamba: Uncertainty-aware U-Mamba for Cardiovascular Segmentation
Ting Yu Tsai
Li Lin
Shu Hu
Connie W. Tsao
Xin Li
Ming-Ching Chang
Hongtu Zhu
Xin Wang
Mamba
41
1
0
22 Sep 2024
Longitudinal Segmentation of MS Lesions via Temporal Difference
  Weighting
Longitudinal Segmentation of MS Lesions via Temporal Difference Weighting
Maximilian R. Rokuss
Yannick Kirchhoff
Saikat Roy
Balint Kovacs
Constantin Ulrich
...
Stefan Denner
Fabian Isensee
Philipp Vollmuth
Jens Kleesiek
Klaus Maier-Hein
25
2
0
20 Sep 2024
Enhanced segmentation of femoral bone metastasis in CT scans of patients
  using synthetic data generation with 3D diffusion models
Enhanced segmentation of femoral bone metastasis in CT scans of patients using synthetic data generation with 3D diffusion models
Emile Saillard
Aurélie Levillain
David Mitton
Jean-Baptiste Pialat
C. Confavreux
H. Follet
Thomas Grenier
MedIm
18
0
0
17 Sep 2024
PSFHS Challenge Report: Pubic Symphysis and Fetal Head Segmentation from
  Intrapartum Ultrasound Images
PSFHS Challenge Report: Pubic Symphysis and Fetal Head Segmentation from Intrapartum Ultrasound Images
Jieyun Bai
Zihao Zhou
Zhanhong Ou
Gregor Koehler
Raphael Stock
...
Mei Zhong
Gaowen Chen
Víctor M. Campello
Yaosheng Lu
Karim Lekadir
24
5
0
17 Sep 2024
Tissue Concepts: supervised foundation models in computational pathology
Tissue Concepts: supervised foundation models in computational pathology
Till Nicke
Jan Raphael Schaefer
Henning Hoefener
Friedrich Feuerhake
Dorit Merhof
Fabian Kiessling
Johannes Lotz
MedIm
39
0
0
05 Sep 2024
TBConvL-Net: A Hybrid Deep Learning Architecture for Robust Medical
  Image Segmentation
TBConvL-Net: A Hybrid Deep Learning Architecture for Robust Medical Image Segmentation
Shahzaib Iqbal
Tariq M. Khan
Syed S. Naqvi
Asim Naveed
Erik H. W. Meijering
MedIm
41
6
0
05 Sep 2024
Automatic Organ and Pan-cancer Segmentation in Abdomen CT: the FLARE
  2023 Challenge
Automatic Organ and Pan-cancer Segmentation in Abdomen CT: the FLARE 2023 Challenge
Jun Ma
Yao Zhang
Song Gu
Cheng Ge
Ershuai Wang
Qin Zhou
Ziyan Huang
Pengju Lyu
Jian He
Bo Wang
34
7
0
22 Aug 2024
SurgicaL-CD: Generating Surgical Images via Unpaired Image Translation
  with Latent Consistency Diffusion Models
SurgicaL-CD: Generating Surgical Images via Unpaired Image Translation with Latent Consistency Diffusion Models
Danush Kumar Venkatesh
Dominik Rivoir
Micha Pfeiffer
Stefanie Speidel
MedIm
62
2
0
19 Aug 2024
MIST: A Simple and Scalable End-To-End 3D Medical Imaging Segmentation
  Framework
MIST: A Simple and Scalable End-To-End 3D Medical Imaging Segmentation Framework
Jingyao Wu
Evan Lim
T. Dang
Brayden Mi
Alex Balsells
V. Sethu
Caroline Chung
Beatrice Riviere
David T. Fuentes
VLM
36
2
0
31 Jul 2024
Quality Assured: Rethinking Annotation Strategies in Imaging AI
Quality Assured: Rethinking Annotation Strategies in Imaging AI
Tim Radsch
Annika Reinke
V. Weru
M. Tizabi
Nicholas Heller
Fabian Isensee
Annette Kopp-Schneider
Lena Maier-Hein
28
1
0
24 Jul 2024
SCIsegV2: A Universal Tool for Segmentation of Intramedullary Lesions in
  Spinal Cord Injury
SCIsegV2: A Universal Tool for Segmentation of Intramedullary Lesions in Spinal Cord Injury
E. Karthik
J. Valošek
Lynn Farner
Dario Pfyffer
Simon Schading-Sassenhausen
...
Kenneth A Weber
Maryam Seif
Rhscir Network Imaging Group
Patrick Freund
Julien Cohen-Adad
30
2
0
24 Jul 2024
Enhancing Cell Instance Segmentation in Scanning Electron Microscopy Images via a Deep Contour Closing Operator
Enhancing Cell Instance Segmentation in Scanning Electron Microscopy Images via a Deep Contour Closing Operator
Florian Robert
Alexia Calovoulos
Laurent Facq
Fanny Decoeur
Etienne Gontier
Christophe F. Grosset
B. D. D. Senneville
14
0
0
22 Jul 2024
xLSTM-UNet can be an Effective 2D & 3D Medical Image Segmentation
  Backbone with Vision-LSTM (ViL) better than its Mamba Counterpart
xLSTM-UNet can be an Effective 2D & 3D Medical Image Segmentation Backbone with Vision-LSTM (ViL) better than its Mamba Counterpart
Tianrun Chen
Chaotao Ding
Lanyun Zhu
Tao Xu
Deyi Ji
Yan Wang
Ying-Dong Zang
Z. Li
MedIm
Mamba
47
13
0
01 Jul 2024
Centerline Boundary Dice Loss for Vascular Segmentation
Centerline Boundary Dice Loss for Vascular Segmentation
Pengcheng Shi
Jiesi Hu
Yanwu Yang
Zilve Gao
Wei Liu
Ting Ma
31
8
0
01 Jul 2024
Robustness Testing of Black-Box Models Against CT Degradation Through
  Test-Time Augmentation
Robustness Testing of Black-Box Models Against CT Degradation Through Test-Time Augmentation
Jack Highton
Quok Zong Chong
Samuel Finestone
A. Beqiri
Julia A. Schnabel
K. Bhatia
OOD
18
1
0
27 Jun 2024
Generative AI for Synthetic Data Across Multiple Medical Modalities: A
  Systematic Review of Recent Developments and Challenges
Generative AI for Synthetic Data Across Multiple Medical Modalities: A Systematic Review of Recent Developments and Challenges
Mahmoud Ibrahim
Yasmina Al Khalil
S. Amirrajab
Chang Sun
M. Breeuwer
J. Pluim
Bart Elen
Gokhan Ertaylan
Michel Dumontier
SyDa
MedIm
33
7
0
27 Jun 2024
μ-Net: A Deep Learning-Based Architecture for μ-CT Segmentation
μ-Net: A Deep Learning-Based Architecture for μ-CT Segmentation
Pierangela Bruno
Edoardo De Rose
Carlo Adornetto
Francesco Calimeri
Sandro Donato
...
Mariacristina Filice
R. Filosa
Gianluigi Greco
S. Imbrogno
Vincenzo Formoso
26
0
0
24 Jun 2024
A New Approach for Evaluating and Improving the Performance of
  Segmentation Algorithms on Hard-to-Detect Blood Vessels
A New Approach for Evaluating and Improving the Performance of Segmentation Algorithms on Hard-to-Detect Blood Vessels
Joao Pedro Parella
Matheus V. da Silva
C. H. Comin
37
0
0
19 Jun 2024
Comparative Benchmarking of Failure Detection Methods in Medical Image
  Segmentation: Unveiling the Role of Confidence Aggregation
Comparative Benchmarking of Failure Detection Methods in Medical Image Segmentation: Unveiling the Role of Confidence Aggregation
M. Zenk
David Zimmerer
Fabian Isensee
Jeremias Traub
T. Norajitra
Paul F. Jäger
Klaus H. Maier-Hein
26
4
0
05 Jun 2024
TotalSegmentator MRI: Robust Sequence-independent Segmentation of Multiple Anatomic Structures in MRI
TotalSegmentator MRI: Robust Sequence-independent Segmentation of Multiple Anatomic Structures in MRI
Tugba Akinci DÁntonoli
Lucas K. Berger
Ashraya K. Indrakanti
Nathan Vishwanathan
Jakob Weiss
...
Andrew Phillip Nicoli
Jakob Wasserthal
Joshy Cyriac
Shan Yang
Jakob Wasserthal
25
24
0
29 May 2024
A study of why we need to reassess full reference image quality assessment with medical images
A study of why we need to reassess full reference image quality assessment with medical images
Anna Breger
A. Biguri
Malena Sabaté Landman
Ian Selby
Nicole Amberg
...
Lipeng Ning
Sören Dittmer
Michael Roberts
AIX-COVNET Collaboration
Carola-Bibiane Schönlieb
37
4
0
29 May 2024
PitVQA: Image-grounded Text Embedding LLM for Visual Question Answering
  in Pituitary Surgery
PitVQA: Image-grounded Text Embedding LLM for Visual Question Answering in Pituitary Surgery
Runlong He
Mengya Xu
Adrito Das
Danyal Z. Khan
Sophia Bano
Hani J. Marcus
Danail Stoyanov
Matthew J. Clarkson
Mobarakol Islam
40
6
0
22 May 2024
BraTS-Path Challenge: Assessing Heterogeneous Histopathologic Brain
  Tumor Sub-regions
BraTS-Path Challenge: Assessing Heterogeneous Histopathologic Brain Tumor Sub-regions
Spyridon Bakas
Siddhesh P. Thakur
S. Faghani
Mana Moassefi
Ujjwal Baid
...
Calixto-Hope G. Lucas
Michael L. Miller
Lee A. D. Cooper
Jason T. Huse
William R. Bell
27
0
0
17 May 2024
Multicenter Privacy-Preserving Model Training for Deep Learning Brain
  Metastases Autosegmentation
Multicenter Privacy-Preserving Model Training for Deep Learning Brain Metastases Autosegmentation
Yixing Huang
Zahra Khodabakhshi
A. Gomaa
Manuel Schmidt
R. Fietkau
Matthias Guckenberger
N. Andratschke
Christoph Bert
S. Tanadini-Lang
F. Putz
28
5
0
17 May 2024
Real-World Federated Learning in Radiology: Hurdles to overcome and
  Benefits to gain
Real-World Federated Learning in Radiology: Hurdles to overcome and Benefits to gain
Markus R. Bujotzek
Unal Akunal
Stefan Denner
Peter Neher
M. Zenk
...
Jens Kleesiek
Tobias Penzkofer
Klaus H. Maier-Hein
R. Braren
Andreas Bucher
AI4CE
29
2
0
15 May 2024
Improving Deep Learning Model Calibration for Cardiac Applications using
  Deterministic Uncertainty Networks and Uncertainty-aware Training
Improving Deep Learning Model Calibration for Cardiac Applications using Deterministic Uncertainty Networks and Uncertainty-aware Training
Tareen Dawood
B. Ruijsink
Reza Razavi
Andrew P. King
Esther Puyol-Antón
UQCV
26
1
0
10 May 2024
MRSegmentator: Robust Multi-Modality Segmentation of 40 Classes in MRI
  and CT Sequences
MRSegmentator: Robust Multi-Modality Segmentation of 40 Classes in MRI and CT Sequences
Hartmut Häntze
Lina Xu
Felix J. Dorfner
Leonhard Donle
Daniel Truhn
...
Mathias Prokop
Bram van Ginneken
Alessa Hering
Lisa Christine Adams
Keno K. Bressem
36
1
0
10 May 2024
Skeleton Recall Loss for Connectivity Conserving and Resource Efficient
  Segmentation of Thin Tubular Structures
Skeleton Recall Loss for Connectivity Conserving and Resource Efficient Segmentation of Thin Tubular Structures
Yannick Kirchhoff
Maximilian R. Rokuss
Saikat Roy
Balint Kovacs
Constantin Ulrich
...
M. Zenk
Philipp Vollmuth
Jens Kleesiek
Fabian Isensee
Klaus Maier-Hein
3DPC
21
12
0
03 Apr 2024
A Robust Ensemble Algorithm for Ischemic Stroke Lesion Segmentation:
  Generalizability and Clinical Utility Beyond the ISLES Challenge
A Robust Ensemble Algorithm for Ischemic Stroke Lesion Segmentation: Generalizability and Clinical Utility Beyond the ISLES Challenge
Ezequiel de la Rosa
Mauricio Reyes
S. Liew
Alexandre Hutton
Roland Wiest
...
Suprosanna Shit
M. H. Petzsche
Bjoern H. Menze
Jan S. Kirschke
Benedikt Wiestler
31
7
0
28 Mar 2024
Strategies to Improve Real-World Applicability of Laparoscopic Anatomy
  Segmentation Models
Strategies to Improve Real-World Applicability of Laparoscopic Anatomy Segmentation Models
Fiona R. Kolbinger
Jiangpeng He
Jinge Ma
F. Zhu
21
2
0
25 Mar 2024
DeepGleason: a System for Automated Gleason Grading of Prostate Cancer
  using Deep Neural Networks
DeepGleason: a System for Automated Gleason Grading of Prostate Cancer using Deep Neural Networks
Dominik Müller
Philip Meyer
Lukas Rentschler
Robin Manz
Jonas Bäcker
...
Christoph Wengenmayr
Bruno Märkl
Ralf Huss
Iñaki Soto Rey
Johannes Raffler
14
4
0
25 Mar 2024
Advancing sleep detection by modelling weak label sets: A novel weakly
  supervised learning approach
Advancing sleep detection by modelling weak label sets: A novel weakly supervised learning approach
M. Boeker
Vajira Thambawita
Michael Riegler
P. Halvorsen
Hugo Lewi Hammer
23
0
0
27 Feb 2024
Super-resolution multi-contrast unbiased eye atlases with deep
  probabilistic refinement
Super-resolution multi-contrast unbiased eye atlases with deep probabilistic refinement
Ho Hin Lee
Adam M. Saunders
Michael E. Kim
Samuel W. Remedios
Lucas W. Remedios
...
Blake E Dewey
J. Spraggins
Jerry L. Prince
Yuankai Huo
Bennett A. Landman
MedIm
22
1
0
05 Jan 2024
Deep Interactive Segmentation of Medical Images: A Systematic Review and
  Taxonomy
Deep Interactive Segmentation of Medical Images: A Systematic Review and Taxonomy
Zdravko Marinov
Paul F. Jäger
Jan Egger
Jens Kleesiek
Rainer Stiefelhagen
30
16
0
23 Nov 2023
Defining the boundaries: challenges and advances in identifying cells in
  microscopy images
Defining the boundaries: challenges and advances in identifying cells in microscopy images
Nodar Gogoberidze
Beth A. Cimini
14
5
0
14 Nov 2023
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