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TotalSegmentator: robust segmentation of 104 anatomical structures in CT
  images
v1v2 (latest)

TotalSegmentator: robust segmentation of 104 anatomical structures in CT images

11 August 2022
Jakob Wasserthal
H. Breit
Manfred T. Meyer
M. Pradella
Daniel Hinck
A. Sauter
T. Heye
Daniel Boll
Joshy Cyriac
Shan Yang
M. Bach
Martin Segeroth
    OOD
ArXiv (abs)PDFHTMLGithub (1914★)

Papers citing "TotalSegmentator: robust segmentation of 104 anatomical structures in CT images"

50 / 291 papers shown
Toward Using Machine Learning as a Shape Quality Metric for Liver Point Cloud Generation
Toward Using Machine Learning as a Shape Quality Metric for Liver Point Cloud Generation
K. T. Nguyen
Gaeun Oh
Ho-min Park
Francesca Tozzi
W. Willaert
J. Vankerschaver
Niki Rashidian
W. D. Neve
DiffMMedIm
124
0
0
04 Aug 2025
Your other Left! Vision-Language Models Fail to Identify Relative Positions in Medical Images
Your other Left! Vision-Language Models Fail to Identify Relative Positions in Medical ImagesInternational Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2025
Daniel Wolf
Heiko Hillenhagen
Billurvan Taskin
Alex Bauerle
Meinrad Beer
Michael Götz
Timo Ropinski
103
2
0
01 Aug 2025
Boosting Vision Semantic Density with Anatomy Normality Modeling for Medical Vision-language Pre-training
Boosting Vision Semantic Density with Anatomy Normality Modeling for Medical Vision-language Pre-training
Weiwei Cao
Jianpeng Zhang
Zhongyi Shui
Sinuo Wang
Z. Chen
...
Le Lu
X. Ye
Tingbo Liang
Qi Zhang
L. Zhang
122
2
0
01 Aug 2025
Rethink Domain Generalization in Heterogeneous Sequence MRI Segmentation
Rethink Domain Generalization in Heterogeneous Sequence MRI Segmentation
Zheyuan Zhang
Linkai Peng
Wanying Dou
Cuiling Sun
Halil Ertugrul Aktas
Andrea Mia Bejar
Elif Keles
Gorkem Durak
Ulas Bagci
OOD
202
0
0
30 Jul 2025
ReXGroundingCT: A 3D Chest CT Dataset for Segmentation of Findings from Free-Text Reports
ReXGroundingCT: A 3D Chest CT Dataset for Segmentation of Findings from Free-Text Reports
Mohammed Baharoon
Luyang Luo
Michael Moritz
Abhinav Kumar
Sung Eun Kim
...
Hong-Yu Zhou
Ibrahim Ethem Hamamci
Scott J. Adams
Hassan Rayhan AlOmaish
Pranav Rajpurkar
153
3
0
29 Jul 2025
Content-based 3D Image Retrieval and a ColBERT-inspired Re-ranking for Tumor Flagging and Staging
Content-based 3D Image Retrieval and a ColBERT-inspired Re-ranking for Tumor Flagging and Staging
Farnaz Khun Jush
Steffen Vogler
Matthias Lenga
257
0
0
23 Jul 2025
Benchmarking of Deep Learning Methods for Generic MRI Multi-Organ Abdominal Segmentation
Benchmarking of Deep Learning Methods for Generic MRI Multi-Organ Abdominal Segmentation
Deepa Krishnaswamy
Cosmin Ciausu
S. Pieper
Ron Kikinis
Benjamin Billot
Andrey Fedorov
OOD
183
0
0
23 Jul 2025
Semantic Segmentation for Preoperative Planning in Transcatheter Aortic Valve Replacement
Semantic Segmentation for Preoperative Planning in Transcatheter Aortic Valve Replacement
Cedric Zöllner
Simon Reiß
A. Jaus
Amroalalaa Sholi
Ralf Sodian
Rainer Stiefelhagen
69
0
0
22 Jul 2025
A Study of Anatomical Priors for Deep Learning-Based Segmentation of Pheochromocytoma in Abdominal CT
A Study of Anatomical Priors for Deep Learning-Based Segmentation of Pheochromocytoma in Abdominal CT
Tanjin Taher Toma
T. Mathai
Bikash Santra
Pritam Mukherjee
Jianfei Liu
...
M. Patel
Darko Pucar
Jayadira del Rivero
Karel Pacak
Ronald M. Summers
135
0
0
21 Jul 2025
Mamba Goes HoME: Hierarchical Soft Mixture-of-Experts for 3D Medical Image Segmentation
Mamba Goes HoME: Hierarchical Soft Mixture-of-Experts for 3D Medical Image Segmentation
Szymon Płotka
Gizem Mert
Maciej Chrabaszcz
Ewa Szczurek
Arkadiusz Sitek
MambaMoE
225
1
0
08 Jul 2025
Exploring the Design Space of 3D MLLMs for CT Report Generation
Exploring the Design Space of 3D MLLMs for CT Report GenerationInternational Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2025
Mohammed Baharoon
Jun Ma
Congyu Fang
Augustin Toma
Bo Wang
189
0
0
26 Jun 2025
Brain Imaging Foundation Models, Are We There Yet? A Systematic Review of Foundation Models for Brain Imaging and Biomedical Research
Brain Imaging Foundation Models, Are We There Yet? A Systematic Review of Foundation Models for Brain Imaging and Biomedical Research
Salah Ghamizi
G. Kanli
Yu Deng
Magali Perquin
O. Keunen
MedImAI4CE
333
1
0
16 Jun 2025
Unleashing Diffusion and State Space Models for Medical Image Segmentation
Unleashing Diffusion and State Space Models for Medical Image Segmentation
Rong Wu
Ziqi Chen
Liming Zhong
Heng Li
Hai Shu
MedIm
281
1
0
15 Jun 2025
Enhancing Privacy: The Utility of Stand-Alone Synthetic CT and MRI for Tumor and Bone Segmentation
Enhancing Privacy: The Utility of Stand-Alone Synthetic CT and MRI for Tumor and Bone Segmentation
André Ferreira
Kunpeng Xie
Caroline Wilpert
Gustavo Correia
Felix Barajas Ordonez
...
Jens Kleesiek
Daniel Truhn
Jan Egger
Victor Alves
B. Puladi
MedIm
158
0
0
13 Jun 2025
Framework of a multiscale data-driven DT of the musculoskeletal system
Framework of a multiscale data-driven DT of the musculoskeletal system
Martina Paccini
Simone Cammarasana
Giuseppe Patané
AI4CE
71
0
0
13 Jun 2025
Conformal coronary calcification volume estimation with conditional coverage via histogram clustering
Conformal coronary calcification volume estimation with conditional coverage via histogram clusteringIEEE International Symposium on Biomedical Imaging (ISBI), 2025
Olivier Jaubert
Salman Mohammadi
K. Goatman
Shadia S. Mikhael
Conor Bradley
Rebecca Hughes
Richard Good
John H. Hipwell
Sonia Dahdouh
125
0
0
04 Jun 2025
Advancements in Artificial Intelligence Applications for Cardiovascular Disease Research
Advancements in Artificial Intelligence Applications for Cardiovascular Disease Research
Yuanlin Mo
Haishan Huang
Bocheng Liang
Weibo Ma
193
0
0
04 Jun 2025
A Large Convolutional Neural Network for Clinical Target and Multi-organ Segmentation in Gynecologic Brachytherapy with Multi-stage Learning
A Large Convolutional Neural Network for Clinical Target and Multi-organ Segmentation in Gynecologic Brachytherapy with Multi-stage Learning
Mingzhe Hu
Yuan Gao
Yuheng Li
Ricahrd LJ Qiu
Chih-Wei Chang
...
Yuan Shao
J. Roper
Jill Remick
Zhen Tian
Xiaofeng Yang
111
0
0
01 Jun 2025
TumorGen: Boundary-Aware Tumor-Mask Synthesis with Rectified Flow Matching
TumorGen: Boundary-Aware Tumor-Mask Synthesis with Rectified Flow Matching
Shengyuan Liu
Wenting Chen
Boyun Zheng
W. Pan
Xiang Li
Yixuan Yuan
MedIm
97
0
0
30 May 2025
ImmunoDiff: A Diffusion Model for Immunotherapy Response Prediction in Lung Cancer
ImmunoDiff: A Diffusion Model for Immunotherapy Response Prediction in Lung Cancer
Moinak Bhattacharya
Judy Huang
Amna F. Sher
Gagandeep Singh
Chao Chen
Prateek Prasanna
DiffMMedIm
155
2
0
29 May 2025
Surf2CT: Cascaded 3D Flow Matching Models for Torso 3D CT Synthesis from Skin Surface
Surf2CT: Cascaded 3D Flow Matching Models for Torso 3D CT Synthesis from Skin Surface
Siyeop Yoon
Y. Oh
Pengfei Jin
Sifan Song
Matthew Tivnan
Dufan Wu
Xiang Li
Shijie Zhao
174
0
0
28 May 2025
Multipath cycleGAN for harmonization of paired and unpaired low-dose lung computed tomography reconstruction kernels
Multipath cycleGAN for harmonization of paired and unpaired low-dose lung computed tomography reconstruction kernels
Aravind Krishnan
Thomas Z. Li
Lucas W. Remedios
Michael E. Kim
Chenyu Gao
...
Lianrui Zuo
K. Sandler
Fabien Maldonado
Yuankai Huo
Bennett A. Landman
150
0
0
28 May 2025
Cascaded 3D Diffusion Models for Whole-body 3D 18-F FDG PET/CT synthesis from Demographics
Cascaded 3D Diffusion Models for Whole-body 3D 18-F FDG PET/CT synthesis from DemographicsInternational Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2025
Siyeop Yoon
Sifan Song
Pengfei Jin
Matthew Tivnan
Y. Oh
Sekeun Kim
Dufan Wu
Xiang Li
Shijie Zhao
MedIm
213
0
0
28 May 2025
Good Enough: Is it Worth Improving your Label Quality?
Good Enough: Is it Worth Improving your Label Quality?
A. Jaus
Zdravko Marinov
C. Seibold
Simon Reiß
Jens Kleesiek
Rainer Stiefelhagen
VLM
226
0
0
27 May 2025
Domain and Task-Focused Example Selection for Data-Efficient Contrastive Medical Image Segmentation
Domain and Task-Focused Example Selection for Data-Efficient Contrastive Medical Image Segmentation
Tyler Ward
Aaron Moseley
Abdullah-Al-Zubaer Imran
SSL
369
0
0
25 May 2025
PolyPose: Deformable 2D/3D Registration via Polyrigid Transformations
PolyPose: Deformable 2D/3D Registration via Polyrigid Transformations
Vivek Gopalakrishnan
Neel Dey
Polina Golland
3DHMedIm
559
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0
25 May 2025
Consensus in the Parliament of AI: Harmonized Multi-Region CT-Radiomics and Foundation-Model Signatures for Multicentre NSCLC Risk Stratification
Consensus in the Parliament of AI: Harmonized Multi-Region CT-Radiomics and Foundation-Model Signatures for Multicentre NSCLC Risk Stratification
Shruti Atul Mali
Zohaib Salahuddin
Danial Khan
Yumeng Zhang
Henry C. Woodruff
...
Damiano Caruso
Christophe Aube
Florence Longueville
Caroline Caramella
Philippe Lambin
170
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23 May 2025
Render-FM: A Foundation Model for Real-time Photorealistic Volumetric Rendering
Render-FM: A Foundation Model for Real-time Photorealistic Volumetric Rendering
Zhongpai Gao
Meng Zheng
Benjamin Planche
Anwesa Choudhuri
Terrence Chen
Ziyan Wu
MedIm3DGSVGen
213
1
0
22 May 2025
TAGS: 3D Tumor-Adaptive Guidance for SAM
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Sirui Li
Linkai Peng
Zheyuan Zhang
Gorkem Durak
Ulas Bagci
MedImVLM
429
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21 May 2025
Patient-Specific Autoregressive Models for Organ Motion Prediction in Radiotherapy
Patient-Specific Autoregressive Models for Organ Motion Prediction in Radiotherapy
Yuxiang Lai
Jike Zhong
Vanessa Su
Xiaofeng Yang
282
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17 May 2025
Using Foundation Models as Pseudo-Label Generators for Pre-Clinical 4D Cardiac CT Segmentation
Using Foundation Models as Pseudo-Label Generators for Pre-Clinical 4D Cardiac CT SegmentationFunctional Imaging and Modeling of the Heart (FIMH), 2025
Anne-Marie Rickmann
S. Thorn
S. Ahn
Supum Lee
Selen Uman
...
Nicole Guerrera
Francis G. Spinale
Jason A. Burdick
Albert J Sinusas
James S. Duncan
MedIm
328
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14 May 2025
Calibration and Uncertainty for multiRater Volume Assessment in multiorgan Segmentation (CURVAS) challenge results
Calibration and Uncertainty for multiRater Volume Assessment in multiorgan Segmentation (CURVAS) challenge results
Meritxell Riera-Marin
S. Ko
Julia Rodriguez-Comas
Matthias Stefan May
Zhaohong Pan
...
Anton Aubanell
Andreu Antolin
Javier Garcia-Lopez
M. A. G. Ballester
Adrian Galdran
UQCV
369
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13 May 2025
BodyGPS: Anatomical Positioning System
BodyGPS: Anatomical Positioning System
H. Yerebakan
Kritika Iyer
Xueqi Guo
Yoshihisa Shinagawa
Gerardo Hermosillo Valadez
MedIm3DH
419
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0
12 May 2025
Multi-Modal Explainable Medical AI Assistant for Trustworthy Human-AI Collaboration
Multi-Modal Explainable Medical AI Assistant for Trustworthy Human-AI Collaboration
Honglong Yang
Shanshan Song
Yi Qin
Lehan Wang
Haonan Wang
Xinpeng Ding
Qixiang Zhang
Bodong Du
Xuelong Li
LM&MA
205
2
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11 May 2025
Text2CT: Towards 3D CT Volume Generation from Free-text Descriptions Using Diffusion Model
Text2CT: Towards 3D CT Volume Generation from Free-text Descriptions Using Diffusion Model
Pengfei Guo
Can Zhao
Dong Yang
Yufan He
V. Nath
...
Zongwei Zhou
Benjamin D. Simon
Stephanie Harmon
Baris Turkbey
Daguang Xu
DiffMMedIm
283
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0
07 May 2025
Advancing Generalizable Tumor Segmentation with Anomaly-Aware Open-Vocabulary Attention Maps and Frozen Foundation Diffusion Models
Advancing Generalizable Tumor Segmentation with Anomaly-Aware Open-Vocabulary Attention Maps and Frozen Foundation Diffusion ModelsComputer Vision and Pattern Recognition (CVPR), 2025
Yankai Jiang
Peng Zhang
Ke Wang
Yuan Tian
Hai Lin
Xinyu Wang
MedIm
964
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Regression is all you need for medical image translation
Regression is all you need for medical image translation
Sebastian Rassmann
David Kügler
Christian Ewert
Martin Reuter
DiffMMedIm
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Accelerating Volumetric Medical Image Annotation via Short-Long Memory SAM 2
Accelerating Volumetric Medical Image Annotation via Short-Long Memory SAM 2IEEE Transactions on Medical Imaging (IEEE TMI), 2025
Yuwen Chen
Zafer Yildiz
Qihang Li
Yaqian Chen
Haoyu Dong
Hanxue Gu
Nicholas Konz
Maciej A. Mazurowski
MedImVLM
478
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03 May 2025
A simple and effective approach for body part recognition on CT scans based on projection estimation
A simple and effective approach for body part recognition on CT scans based on projection estimationScientific Reports (Sci Rep), 2025
Franko Hrzic
Mohammadreza Movahhedi
Ophelie Lavoie-Gagne
Ata Kiapour
264
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Boosting 3D Liver Shape Datasets with Diffusion Models and Implicit Neural Representations
Boosting 3D Liver Shape Datasets with Diffusion Models and Implicit Neural RepresentationsInternational Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2025
K. T. Nguyen
Francesca Tozzi
W. Willaert
J. Vankerschaver
Nikdokht Rashidian
W. D. Neve
DiffMMedIm
878
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Anatomy-constrained modelling of image-derived input functions in dynamic PET using multi-organ segmentation
Anatomy-constrained modelling of image-derived input functions in dynamic PET using multi-organ segmentation
Valentin Langer
Kartikay Tehlan
Thomas Wendler
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Performance Estimation for Supervised Medical Image Segmentation Models on Unlabeled Data Using UniverSeg
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Jingchen Zou
Jianqiang Li
Gabriel Jimenez
Qing Zhao
Daniel Racoceanu
Matias Cosarinsky
Enzo Ferrante
Guanghui Fu
198
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seg2med: a bridge from artificial anatomy to multimodal medical images
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Zeyu Yang
Zhilin Chen
Yipeng Sun
Anika Strittmatter
Anish Raj
Ahmad Allababidi
Johann S. Rink
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DiffMMedIm
314
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X2BR: High-Fidelity 3D Bone Reconstruction from a Planar X-Ray Image with Hybrid Neural Implicit Methods
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Gokce Guven
H. F. Ugurdag
H. Ateş
191
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SynthFM: Training Modality-agnostic Foundation Models for Medical Image Segmentation without Real Medical Data
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Sourya Sengupta
Satrajit Chakrabarty
Keerthi Sravan Ravi
Gopal Avinash
Ravi Soni
MedIm
140
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Synthetic CT Generation from Time-of-Flight Non-Attenutaion-Corrected PET for Whole-Body PET Attenuation Correction
Synthetic CT Generation from Time-of-Flight Non-Attenutaion-Corrected PET for Whole-Body PET Attenuation CorrectionIEEE International Symposium on Biomedical Imaging (ISBI), 2025
Weijie Chen
James Wang
Alan McMillan
MedIm
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Benchmarking Multi-Organ Segmentation Tools for Multi-Parametric T1-weighted Abdominal MRI
Benchmarking Multi-Organ Segmentation Tools for Multi-Parametric T1-weighted Abdominal MRI
Nicole Tran
Anisa V. Prasad
Yan Zhuang
T. Mathai
Boah Kim
Sydney Lewis
P. Mukherjee
Jianfei Liu
Ronald M. Summers
261
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10 Apr 2025
UKBOB: One Billion MRI Labeled Masks for Generalizable 3D Medical Image Segmentation
UKBOB: One Billion MRI Labeled Masks for Generalizable 3D Medical Image Segmentation
Emmanuelle Bourigault
A. Jamaludin
Abdullah Hamdi
333
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Longitudinal Assessment of Lung Lesion Burden in CT
Longitudinal Assessment of Lung Lesion Burden in CT
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Benjamin Hou
Ronald M. Summers
185
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Leveraging Anatomical Priors for Automated Pancreas Segmentation on Abdominal CT
Leveraging Anatomical Priors for Automated Pancreas Segmentation on Abdominal CT
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T. Mathai
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Jianfei Liu
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