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TotalSegmentator: robust segmentation of 104 anatomical structures in CT
  images
v1v2 (latest)

TotalSegmentator: robust segmentation of 104 anatomical structures in CT images

11 August 2022
Jakob Wasserthal
H. Breit
Manfred T. Meyer
M. Pradella
Daniel Hinck
A. Sauter
T. Heye
Daniel Boll
Joshy Cyriac
Shan Yang
M. Bach
Martin Segeroth
    OOD
ArXiv (abs)PDFHTMLGithub (1914★)

Papers citing "TotalSegmentator: robust segmentation of 104 anatomical structures in CT images"

41 / 291 papers shown
Segmentation of Mediastinal Lymph Nodes in CT with Anatomical Priors
Segmentation of Mediastinal Lymph Nodes in CT with Anatomical PriorsInternational Journal of Computer Assisted Radiology and Surgery (IJCARS), 2024
T. Mathai
Bohan Liu
Ronald M. Summers
107
11
0
11 Jan 2024
U-Mamba: Enhancing Long-range Dependency for Biomedical Image
  Segmentation
U-Mamba: Enhancing Long-range Dependency for Biomedical Image Segmentation
Jun Ma
Feifei Li
Bo Wang
Mamba
293
602
0
09 Jan 2024
Segment Anything Model for Medical Image Segmentation: Current
  Applications and Future Directions
Segment Anything Model for Medical Image Segmentation: Current Applications and Future Directions
Yichi Zhang
Zhenrong Shen
Rushi Jiao
VLMMedIm
302
254
0
07 Jan 2024
Probing the Limits and Capabilities of Diffusion Models for the Anatomic
  Editing of Digital Twins
Probing the Limits and Capabilities of Diffusion Models for the Anatomic Editing of Digital Twins
Karim Kadry
Shreya Gupta
F. R. Nezami
E. Edelman
MedIm
251
12
0
30 Dec 2023
Benchmarking the CoW with the TopCoW Challenge: Topology-Aware Anatomical Segmentation of the Circle of Willis for CTA and MRA
Benchmarking the CoW with the TopCoW Challenge: Topology-Aware Anatomical Segmentation of the Circle of Willis for CTA and MRA
Kaiyuan Yang
Fabio Musio
Yihui Ma
Norman Juchler
Johannes C. Paetzold
...
Adrian Galdran
Matteo Delucchi
Jialu Liu
Haibin Huang
Yue Cui
517
41
0
29 Dec 2023
Continual Learning in Medical Image Analysis: A Comprehensive Review of
  Recent Advancements and Future Prospects
Continual Learning in Medical Image Analysis: A Comprehensive Review of Recent Advancements and Future Prospects
Pratibha Kumari
Joohi Chauhan
Afshin Bozorgpour
Boqiang Huang
Reza Azad
Dorit Merhof
386
19
0
28 Dec 2023
Large-Vocabulary Segmentation for Medical Images with Text Prompts
Large-Vocabulary Segmentation for Medical Images with Text Prompts
Ziheng Zhao
Yao Zhang
Chaoyi Wu
Xiaoman Zhang
Ya Zhang
Yanfeng Wang
Weidi Xie
Weidi Xie
VLMMedIm
661
42
0
28 Dec 2023
SegRap2023: A Benchmark of Organs-at-Risk and Gross Tumor Volume
  Segmentation for Radiotherapy Planning of Nasopharyngeal Carcinoma
SegRap2023: A Benchmark of Organs-at-Risk and Gross Tumor Volume Segmentation for Radiotherapy Planning of Nasopharyngeal Carcinoma
Xiangde Luo
Jia Fu
Yunxin Zhong
Shuolin Liu
Bing Han
...
Mu Zhou
Shichuan Zhang
Wenjun Liao
Guotai Wang
Shaoting Zhang
208
42
0
15 Dec 2023
ScribblePrompt: Fast and Flexible Interactive Segmentation for Any
  Biomedical Image
ScribblePrompt: Fast and Flexible Interactive Segmentation for Any Biomedical ImageEuropean Conference on Computer Vision (ECCV), 2023
Hallee E. Wong
Marianne Rakic
John Guttag
Adrian V. Dalca
378
39
0
12 Dec 2023
Building Universal Foundation Models for Medical Image Analysis with
  Spatially Adaptive Networks
Building Universal Foundation Models for Medical Image Analysis with Spatially Adaptive Networks
Lingxiao Luo
Xuanzhong Chen
Bingda Tang
Xinsheng Chen
Rong Han
Chengpeng Hu
Yujiang Li
Ting Chen
MedIm
212
3
0
12 Dec 2023
Semantic Image Synthesis for Abdominal CT
Semantic Image Synthesis for Abdominal CT
Zhuang Yan
Benjamin Hou
T. Mathai
Pritam Mukherjee
Boah Kim
Ronald M. Summers
DiffMMedIm
200
14
0
11 Dec 2023
DG-TTA: Out-of-domain Medical Image Segmentation through Augmentation and Descriptor-driven Domain Generalization and Test-Time Adaptation
DG-TTA: Out-of-domain Medical Image Segmentation through Augmentation and Descriptor-driven Domain Generalization and Test-Time Adaptation
Christian Weihsbach
Christian N. Kruse
Alexander Bigalke
Mattias P. Heinrich
440
1
0
11 Dec 2023
Three-dimensional numerical schemes for the segmentation of the psoas
  muscle in X-ray computed tomography images
Three-dimensional numerical schemes for the segmentation of the psoas muscle in X-ray computed tomography images
Giulio Paolucci
I. Cama
C. Campi
Michele Piana
148
1
0
10 Dec 2023
Shape Matters: Detecting Vertebral Fractures Using Differentiable
  Point-Based Shape Decoding
Shape Matters: Detecting Vertebral Fractures Using Differentiable Point-Based Shape Decoding
Hellena Hempe
Alexander Bigalke
Mattias P. Heinrich
MedIm
149
2
0
08 Dec 2023
3D-MIR: A Benchmark and Empirical Study on 3D Medical Image Retrieval in
  Radiology
3D-MIR: A Benchmark and Empirical Study on 3D Medical Image Retrieval in Radiology
Asma Ben Abacha
Alberto Santamaría-Pang
Ho Hin Lee
J. Merkow
Qin Cai
...
Julia Gong
M. Lungren
Thomas Lin
Noel C. F. Codella
Ivan Tarapov
143
11
0
23 Nov 2023
Medical Image Retrieval Using Pretrained Embeddings
Medical Image Retrieval Using Pretrained EmbeddingsIEEE International Symposium on Biomedical Imaging (ISBI), 2023
Farnaz Khun Jush
Tuan Truong
Steffen Vogler
Matthias Lenga
292
13
0
22 Nov 2023
Automated Measurement of Pericoronary Adipose Tissue Attenuation and
  Volume in CT Angiography
Automated Measurement of Pericoronary Adipose Tissue Attenuation and Volume in CT AngiographyIEEE International Symposium on Biomedical Imaging (ISBI), 2023
Andrew M. Nguyen
T. Mathai
Liangchen Liu
Jianfei Liu
Ronald M. Summers
123
2
0
22 Nov 2023
SA-Med2D-20M Dataset: Segment Anything in 2D Medical Imaging with 20
  Million masks
SA-Med2D-20M Dataset: Segment Anything in 2D Medical Imaging with 20 Million masks
Jin Ye
Junlong Cheng
Jianpin Chen
Zhongying Deng
Tian-Xin Li
...
Hui Sun
Min Zhu
Shaoting Zhang
Junjun He
Yu Qiao
VLMMedIm
221
57
0
20 Nov 2023
Slide-SAM: Medical SAM Meets Sliding Window
Slide-SAM: Medical SAM Meets Sliding Window
Quan Quan
Fenghe Tang
Zikang Xu
Heqin Zhu
S.Kevin Zhou
VLMMedIm
381
12
0
16 Nov 2023
SIRE: scale-invariant, rotation-equivariant estimation of artery
  orientations using graph neural networks
SIRE: scale-invariant, rotation-equivariant estimation of artery orientations using graph neural networks
Dieuwertje Alblas
Julian Suk
Christoph Brune
K. K. Yeung
J. Wolterink
MedIm
223
5
0
09 Nov 2023
Multisensory extended reality applications offer benefits for volumetric
  biomedical image analysis in research and medicine
Multisensory extended reality applications offer benefits for volumetric biomedical image analysis in research and medicine
Kathrin Krieger
Jan Egger
Jens Kleesiek
Matthias Gunzer
Jianxu Chen
99
3
0
07 Nov 2023
AeroPath: An airway segmentation benchmark dataset with challenging
  pathology
AeroPath: An airway segmentation benchmark dataset with challenging pathologyPLoS ONE (PLoS ONE), 2023
Karen H Støverud
D. Bouget
André Pedersen
H. O. Leira
T. Langø
E. F. Hofstad
185
13
0
02 Nov 2023
TRUSTED: The Paired 3D Transabdominal Ultrasound and CT Human Data for
  Kidney Segmentation and Registration Research
TRUSTED: The Paired 3D Transabdominal Ultrasound and CT Human Data for Kidney Segmentation and Registration Research
William Ndzimbong
Cyril Fourniol
Loic Themyr
Nicolas Thome
Yvonne Keeza
...
J. Marescaux
Daniel George
Didier Mutter
Alexandre Hostettler
Toby Collins
150
0
0
19 Oct 2023
MedSyn: Text-guided Anatomy-aware Synthesis of High-Fidelity 3D CT
  Images
MedSyn: Text-guided Anatomy-aware Synthesis of High-Fidelity 3D CT ImagesIEEE Transactions on Medical Imaging (TMI), 2023
Yanwu Xu
Li Sun
Wei Peng
Shyam Visweswaran
Kayhan Batmanghelich
MedImDiffM
351
43
0
05 Oct 2023
A mirror-Unet architecture for PET/CT lesion segmentation
A mirror-Unet architecture for PET/CT lesion segmentation
Yamila Rotstein Habarnau
Mauro Namías
98
1
0
23 Sep 2023
FourierLoss: Shape-Aware Loss Function with Fourier Descriptors
FourierLoss: Shape-Aware Loss Function with Fourier Descriptors
Mehmet Bahadir Erden
Selahattin Cansiz
Onur Çakı
Haya Khattak
D. Etiz
M. Yakar
K. Duruer
Berke Barut
Cigdem Demir
OODMedIm
109
3
0
21 Sep 2023
Two-Stage Hybrid Supervision Framework for Fast, Low-resource, and
  Accurate Organ and Pan-cancer Segmentation in Abdomen CT
Two-Stage Hybrid Supervision Framework for Fast, Low-resource, and Accurate Organ and Pan-cancer Segmentation in Abdomen CT
Wentao Liu
Tong Tian
Weijing Xu
Lemeng Wang
Haoyuan Li
Huihua Yang
142
4
0
11 Sep 2023
A-Eval: A Benchmark for Cross-Dataset Evaluation of Abdominal
  Multi-Organ Segmentation
A-Eval: A Benchmark for Cross-Dataset Evaluation of Abdominal Multi-Organ Segmentation
Ziyan Huang
Zhongying Deng
Jin Ye
Haoyu Wang
Yan-Cheng Su
...
Junjun He
Yun Gu
Shaoting Zhang
Lixu Gu
Yu Qiao
ELM
165
6
0
07 Sep 2023
MedShapeNet -- A Large-Scale Dataset of 3D Medical Shapes for Computer
  Vision
MedShapeNet -- A Large-Scale Dataset of 3D Medical Shapes for Computer Vision
Jianning Li
Zongwei Zhou
Jiancheng Yang
Antonio Pepe
Christina Schwarz-Gsaxner
...
B. Puladi
Pascal Fua
Yaoyao Liu
Jens Kleesiek
Jan Egger
MedIm3DH
462
52
0
30 Aug 2023
Unleashing the Strengths of Unlabeled Data in Pan-cancer Abdominal Organ
  Quantification: the FLARE22 Challenge
Unleashing the Strengths of Unlabeled Data in Pan-cancer Abdominal Organ Quantification: the FLARE22 Challenge
Jun Ma
Yu Zhang
Song Gu
Cheng Ge
Shih-Ya Ma
...
Qiongjie Zhu
Guoqiang Dong
Jian He
the Flare Challenge Consortium
Bohui Wang
176
80
0
10 Aug 2023
LOTUS: Learning to Optimize Task-based US representations
LOTUS: Learning to Optimize Task-based US representationsInternational Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2023
Yordanka Velikova
Mohammad Farid Azampour
Walter Simson
Vanessa Gonzalez Duque
Nassir Navab
MedIm
144
5
0
29 Jul 2023
A survey on deep learning in medical image registration: new
  technologies, uncertainty, evaluation metrics, and beyond
A survey on deep learning in medical image registration: new technologies, uncertainty, evaluation metrics, and beyond
Junyu Chen
Yihao Liu
Shuwen Wei
Zhangxing Bian
Shalini Subramanian
A. Carass
Jerry L. Prince
Yong Du
OOD
463
95
0
28 Jul 2023
MedLSAM: Localize and Segment Anything Model for 3D CT Images
MedLSAM: Localize and Segment Anything Model for 3D CT Images
Wenhui Lei
Xu Wei
Xiaofan Zhang
Kang Li
Shaoting Zhang
MedIm
393
3
0
26 Jun 2023
On the Challenges and Perspectives of Foundation Models for Medical
  Image Analysis
On the Challenges and Perspectives of Foundation Models for Medical Image Analysis
Shaoting Zhang
Dimitris N. Metaxas
LM&MAVLMMedImAI4CE
339
235
0
09 Jun 2023
Segment Anything Model for Medical Images?
Segment Anything Model for Medical Images?
Yuhao Huang
Yitian Zhao
Lei Mou
Huazhu Fu
Ao Chang
...
Lei Li
Vicente Grau
M. Akiba
Fajin Dong
Jiang-Dong Liu
VLM
210
312
0
28 Apr 2023
Specialty-Oriented Generalist Medical AI for Chest CT Screening
Specialty-Oriented Generalist Medical AI for Chest CT Screening
Chuang Niu
Qing Lyu
Christopher D. Carothers
P. Kaviani
Josh Tan
Pingkun Yan
Mannudeep K. Kalra
C. Whitlow
Ge Wang
226
5
0
03 Apr 2023
A new dataset for measuring the performance of blood vessel segmentation
  methods under distribution shifts
A new dataset for measuring the performance of blood vessel segmentation methods under distribution shiftsPLoS ONE (PLoS ONE), 2023
Matheus V. da Silva
Natália de Carvalho Santos
Julie Ouellette
Baptiste Lacoste
C. H. Comin
285
2
0
11 Jan 2023
Med-Query: Steerable Parsing of 9-DoF Medical Anatomies with Query
  Embedding
Med-Query: Steerable Parsing of 9-DoF Medical Anatomies with Query EmbeddingIEEE journal of biomedical and health informatics (IEEE JBHI), 2022
Heng Guo
Jianfeng Zhang
K. Yan
Le Lu
Minfeng Xu
MedIm
179
3
0
05 Dec 2022
Dual-distribution discrepancy with self-supervised refinement for
  anomaly detection in medical images
Dual-distribution discrepancy with self-supervised refinement for anomaly detection in medical images
Yu Cai
Hao Chen
Xin Yang
Yu Zhou
Kwang-Ting Cheng
344
3
0
09 Oct 2022
One Model to Unite Them All: Personalized Federated Learning of
  Multi-Contrast MRI Synthesis
One Model to Unite Them All: Personalized Federated Learning of Multi-Contrast MRI Synthesis
Onat Dalmaz
Muhammad Usama Mirza
Gokberk Elmas
Muzaffer Özbey
S. Dar
Emir Ceyani
Salman Avestimehr
Tolga cCukur
MedIm
364
53
0
13 Jul 2022
Deep learning-based conditional inpainting for restoration of
  artifact-affected 4D CT images
Deep learning-based conditional inpainting for restoration of artifact-affected 4D CT imagesMedical Physics (Lancaster) (Med. Phys.), 2022
F. Madesta
T. Sentker
T. Gauer
R. Werner
MedIm
93
12
0
12 Mar 2022
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