Protein Language Models and Structure Prediction: Connection and
Progression

Protein Language Models and Structure Prediction: Connection and Progression

30 November 2022

Cheng Tan

Stan Z. Li

Papers citing "Protein Language Models and Structure Prediction: Connection and Progression"

15 / 15 papers shown

Title
Cross-Gate MLP with Protein Complex Invariant Embedding is A One-Shot Antibody Designer Cheng Tan Zhangyang Gao Lirong Wu Jun-Xiong Xia Jiangbin Zheng Xihong Yang Yue Liu Bozhen Hu Stan Z. Li 20 14 0 21 Apr 2023
PiFold: Toward effective and efficient protein inverse folding Zhangyang Gao Cheng Tan Pablo Chacón Stan Z. Li AI4CE 59 104 0 22 Sep 2022
Equiformer: Equivariant Graph Attention Transformer for 3D Atomistic Graphs Yi-Lun Liao Tess E. Smidt 73 142 0 23 Jun 2022
Tranception: protein fitness prediction with autoregressive transformers and inference-time retrieval Pascal Notin M. Dias J. Frazer Javier Marchena-Hurtado Aidan N. Gomez D. Marks Y. Gal 53 172 0 27 May 2022
Transformer Quality in Linear Time Weizhe Hua Zihang Dai Hanxiao Liu Quoc V. Le 71 220 0 21 Feb 2022
AlphaDesign: A graph protein design method and benchmark on AlphaFoldDB Zhangyang Gao Cheng Tan Stan Z. Li 132 52 0 01 Feb 2022
OntoProtein: Protein Pretraining With Gene Ontology Embedding Ningyu Zhang Zhen Bi Xiaozhuan Liang Shuyang Cheng Haosen Hong Shumin Deng J. Lian Qiang Zhang Huajun Chen 88 86 0 23 Jan 2022
Scaling Laws for Neural Language Models Jared Kaplan Sam McCandlish T. Henighan Tom B. Brown B. Chess R. Child Scott Gray Alec Radford Jeff Wu Dario Amodei 220 3,054 0 23 Jan 2020
Megatron-LM: Training Multi-Billion Parameter Language Models Using Model Parallelism M. Shoeybi M. Patwary Raul Puri P. LeGresley Jared Casper Bryan Catanzaro MoE 243 1,791 0 17 Sep 2019
K-BERT: Enabling Language Representation with Knowledge Graph Weijie Liu Peng Zhou Zhe Zhao Zhiruo Wang Qi Ju Haotang Deng Ping Wang 220 773 0 17 Sep 2019
Knowledge Enhanced Contextual Word Representations Matthew E. Peters Mark Neumann IV RobertL.Logan Roy Schwartz Vidur Joshi Sameer Singh Noah A. Smith 215 651 0 09 Sep 2019
Protein Secondary Structure Prediction Using Deep Multi-scale Convolutional Neural Networks and Next-Step Conditioning A. Busia Jasmine Collins Navdeep Jaitly 21 19 0 04 Nov 2016
ImageNet Large Scale Visual Recognition Challenge Olga Russakovsky Jia Deng Hao Su J. Krause S. Satheesh ... A. Karpathy A. Khosla Michael S. Bernstein Alexander C. Berg Li Fei-Fei VLM ObjD 279 39,083 0 01 Sep 2014
Deep Supervised and Convolutional Generative Stochastic Network for Protein Secondary Structure Prediction Jian Zhou O. Troyanskaya 38 144 0 06 Mar 2014
Efficient Estimation of Word Representations in Vector Space Tomáš Mikolov Kai Chen G. Corrado J. Dean 3DV 228 29,632 0 16 Jan 2013