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Integration of Pre-trained Protein Language Models into Geometric Deep
  Learning Networks

Integration of Pre-trained Protein Language Models into Geometric Deep Learning Networks

7 December 2022
Fang Wu
Yujun Tao
Dragomir R. Radev
Jinbo Xu
Stan Z. Li
    AI4CE
ArXivPDFHTML

Papers citing "Integration of Pre-trained Protein Language Models into Geometric Deep Learning Networks"

10 / 10 papers shown
Title
Bidirectional Hierarchical Protein Multi-Modal Representation Learning
Bidirectional Hierarchical Protein Multi-Modal Representation Learning
Xuefeng Liu
Songhao Jiang
Chih-chan Tien
J. Xu
Rick L. Stevens
18
0
0
07 Apr 2025
FlexMol: A Flexible Toolkit for Benchmarking Molecular Relational
  Learning
FlexMol: A Flexible Toolkit for Benchmarking Molecular Relational Learning
Sizhe Liu
Jun-Xiong Xia
Lecheng Zhang
Yuchen Liu
Yue Liu
...
Zhangyang Gao
Bozhen Hu
Cheng Tan
Hongxin Xiang
Stan Z. Li
16
2
0
19 Oct 2024
Binding Affinity Prediction: From Conventional to Machine Learning-Based
  Approaches
Binding Affinity Prediction: From Conventional to Machine Learning-Based Approaches
Xuefeng Liu
Songhao Jiang
Xiaotian Duan
Archit Vasan
Chong Liu
...
Heng Ma
Thomas Brettin
Fangfang Xia
Ian T. Foster
Rick L. Stevens
AI4CE
31
0
0
30 Sep 2024
PepHarmony: A Multi-View Contrastive Learning Framework for Integrated
  Sequence and Structure-Based Peptide Encoding
PepHarmony: A Multi-View Contrastive Learning Framework for Integrated Sequence and Structure-Based Peptide Encoding
Ruochi Zhang
Haoran Wu
Chang Liu
Hua-Wang Li
Yuqian Wu
...
Yifan Wang
Yifan Deng
Jiahui Chen
Fengfeng Zhou
Xin Gao
AI4TS
24
2
0
21 Jan 2024
A Hierarchical Training Paradigm for Antibody Structure-sequence
  Co-design
A Hierarchical Training Paradigm for Antibody Structure-sequence Co-design
Fang Wu
Stan Z. Li
14
16
0
30 Oct 2023
AtomSurf : Surface Representation for Learning on Protein Structures
AtomSurf : Surface Representation for Learning on Protein Structures
Vincent Mallet
Souhaib Attaiki
M. Ovsjanikov
27
3
0
28 Sep 2023
Pairing interacting protein sequences using masked language modeling
Pairing interacting protein sequences using masked language modeling
Umberto Lupo
Damiano Sgarbossa
Anne-Florence Bitbol
8
9
0
14 Aug 2023
Holographic-(V)AE: an end-to-end SO(3)-Equivariant (Variational)
  Autoencoder in Fourier Space
Holographic-(V)AE: an end-to-end SO(3)-Equivariant (Variational) Autoencoder in Fourier Space
Gian Marco Visani
Michael N. Pun
Arman Angaji
Armita Nourmohammad
BDL
11
3
0
30 Sep 2022
Contrastive Representation Learning for 3D Protein Structures
Contrastive Representation Learning for 3D Protein Structures
Pedro Hermosilla
Timo Ropinski
3DV
38
51
0
31 May 2022
MoleculeNet: A Benchmark for Molecular Machine Learning
MoleculeNet: A Benchmark for Molecular Machine Learning
Zhenqin Wu
Bharath Ramsundar
Evan N. Feinberg
Joseph Gomes
C. Geniesse
Aneesh S. Pappu
K. Leswing
Vijay S. Pande
OOD
157
1,748
0
02 Mar 2017
1