Structure-informed Language Models Are Protein Designers

Structure-informed Language Models Are Protein Designers

3 February 2023

Quanquan Gu

Papers citing "Structure-informed Language Models Are Protein Designers"

15 / 15 papers shown

Title
IgCraft: A versatile sequence generation framework for antibody discovery and engineering Matthew Greenig Haowen Zhao Vladimir Radenkovic Aubin Ramon Pietro Sormanni 44 0 0 25 Mar 2025
A Survey of Graph Transformers: Architectures, Theories and Applications Chaohao Yuan Kangfei Zhao Ercan Engin Kuruoglu Liang Wang Tingyang Xu Wenbing Huang Deli Zhao Hong Cheng Yu Rong 55 4 0 23 Feb 2025
Decoupled Sequence and Structure Generation for Realistic Antibody Design Nayoung Kim Minsu Kim Sungsoo Ahn Jinkyoo Park 47 0 0 20 Jan 2025
Chemical Language Model Linker: blending text and molecules with modular adapters Yifan Deng Spencer S. Ericksen Anthony Gitter 28 1 0 26 Oct 2024
CoPRA: Bridging Cross-domain Pretrained Sequence Models with Complex Structures for Protein-RNA Binding Affinity Prediction Rong Han Xiaohong Liu Tong Pan Jing Xu Xiaoyu Wang ... Zhenyu Li Zixuan Wang Jiangning Song Guangyu Wang Ting Chen 24 0 0 21 Aug 2024
UniIF: Unified Molecule Inverse Folding Zhangyang Gao Jue Wang Cheng Tan Lirong Wu Yufei Huang Siyuan Li Zhirui Ye Stan Z. Li 37 4 0 29 May 2024
A Survey of Geometric Graph Neural Networks: Data Structures, Models and Applications Jiaqi Han Jiacheng Cen Liming Wu Zongzhao Li Xiangzhe Kong ... Zhewei Wei Deli Zhao Yu Rong Wenbing Huang Wenbing Huang AI4CE 34 20 0 01 Mar 2024
PDB-Struct: A Comprehensive Benchmark for Structure-based Protein Design Chuanrui Wang Bozitao Zhong Zuobai Zhang Narendra Chaudhary Sanchit Misra Jian Tang 25 5 0 30 Nov 2023
Diffusion Language Models Can Perform Many Tasks with Scaling and Instruction-Finetuning Jiasheng Ye Zaixiang Zheng Yu Bao Lihua Qian Quanquan Gu DiffM 54 14 0 23 Aug 2023
Knowledge-Design: Pushing the Limit of Protein Design via Knowledge Refinement Zhangyang Gao Cheng Tan Stan Z. Li 27 15 0 20 May 2023
A Text-guided Protein Design Framework Shengchao Liu Yanjing Li Zhuoxinran Li A. Gitter Yutao Zhu ... Arvind Ramanathan Chaowei Xiao Jian Tang Hongyu Guo Anima Anandkumar 67 61 0 09 Feb 2023
Complexity-Based Prompting for Multi-Step Reasoning Yao Fu Hao-Chun Peng Ashish Sabharwal Peter Clark Tushar Khot ReLM LRM 162 414 0 03 Oct 2022
PiFold: Toward effective and efficient protein inverse folding Zhangyang Gao Cheng Tan Pablo Chacón Stan Z. Li AI4CE 67 104 0 22 Sep 2022
Chain-of-Thought Prompting Elicits Reasoning in Large Language Models Jason W. Wei Xuezhi Wang Dale Schuurmans Maarten Bosma Brian Ichter F. Xia Ed H. Chi Quoc Le Denny Zhou LM&Ro LRM AI4CE ReLM 358 8,495 0 28 Jan 2022
Scaling Laws for Neural Language Models Jared Kaplan Sam McCandlish T. Henighan Tom B. Brown B. Chess R. Child Scott Gray Alec Radford Jeff Wu Dario Amodei 234 4,469 0 23 Jan 2020