Title
Adaptive Multi-Scale Integration Unlocks Robust Cell Annotation in Histopathology Images Yinuo Xu Yan Cui Mingyao Li Zhi Huang 67 0 0 17 Nov 2025
Rank-Aware Agglomeration of Foundation Models for Immunohistochemistry Image Cell Counting Z. Huang Mengxin Tian Huan Liu W. Li Baobao Liang J. Wu Fang Yan Zhaoqing Tang Z. Li 68 0 0 16 Nov 2025
ITC-RWKV: Interactive Tissue-Cell Modeling with Recurrent Key-Value Aggregation for Histopathological Subtyping Yating Huang Qijun Yang Lintao Xiang Hujun Yin 76 0 0 24 Oct 2025
ACS-SegNet: An Attention-Based CNN-SegFormer Segmentation Network for Tissue Segmentation in Histopathology Nima Torbati Anastasia Meshcheryakova Ramona Woitek Diana Mechtcheriakova Amirreza Mahbod 63 0 0 23 Oct 2025
Morphology-Aware Prognostic model for Five-Year Survival Prediction in Colorectal Cancer from H&E Whole Slide Images Usama Sajjad Abdul Rehman Akbar Ziyu Su Deborah Knight Wendy L. Frankel M. Gürcan Wei Chen M. Niazi 70 0 0 16 Oct 2025
Cell Instance Segmentation: The Devil Is in the BoundariesIEEE Transactions on Medical Imaging (IEEE TMI), 2025 Peixian Liang Yifan Ding Yizhe Zhang Jianxu Chen Hao Zheng ... Guangyu Meng Tim Weninger Michael Niemier X. S. Hu Danny Chen ISeg 145 0 0 10 Oct 2025
MATCH: Multi-faceted Adaptive Topo-Consistency for Semi-Supervised Histopathology Segmentation Meilong Xu Xiaoling Hu Shahira Abousamra Chen Li Chao Chen 64 0 0 02 Oct 2025
Evaluating New AI Cell Foundation Models on Challenging Kidney Pathology Cases Unaddressed by Previous Foundation Models Runchen Wang Junlin Guo Siqi Lu Ruining Deng Zhengyi Lu ... Catie Chang Mitchell Wilkes Mengmeng Yin Haichun Yang Yuankai Huo 68 0 0 01 Oct 2025
OCELOT 2023: Cell Detection from Cell-Tissue Interaction Challenge Jaewoong Shin Jeongun Ryu Aaron Valero Puche Jinhee Lee Biagio Brattoli ... Ji Zheng Hu Bin Y. Lo Ching-Hui Yang Sérgio Pereira 88 0 0 11 Sep 2025
Co-Seg: Mutual Prompt-Guided Collaborative Learning for Tissue and Nuclei SegmentationInternational Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2025 Qing Xu Wenting Duan Zhen Chen 96 2 0 08 Sep 2025
MorphGen: Morphology-Guided Representation Learning for Robust Single-Domain Generalization in Histopathological Cancer Classification Hikmat Khan Syed Farhan Alam Zaidi Pir Masoom Shah Kiruthika Balakrishnan Rabia Khan Muhammad Waqas Jia Wu OOD MedIm 112 0 0 30 Aug 2025
Sketchpose: Learning to Segment Cells with Partial AnnotationsMachine Learning for Biomedical Imaging (MLBI), 2025 Clément Cazorla Nathanaël Munier Renaud Morin Pierre Weiss 3DPC 40 4 0 25 Aug 2025
Fine-grained Multi-class Nuclei Segmentation with Molecular-empowered All-in-SAM ModelJournal of Medical Imaging (JMI), 2025 Xueyuan Li Can Cui Ruining Deng Yucheng Tang Quan Liu Tianyuan Yao Shunxing Bao Naweed Chowdhury Haichun Yang Daniel Moyer VLM 84 2 0 21 Aug 2025
Towards Comprehensive Cellular Characterisation of H&E slides Benjamin Adjadj Pierre-Antoine Bannier Guillaume Horent Sebastien Mandela Aurore Lyon ... Reda Belbahri Benoît Schmauch Eric Durand Katharina Von Loga Lucie Gillet VLM 96 0 0 13 Aug 2025
MambaVesselNet++: A Hybrid CNN-Mamba Architecture for Medical Image SegmentationACM Transactions on Multimedia Computing, Communications, and Applications (TOMCCAP) (TOMM), 2025 Qing Xu Yanming Chen Yue Li Ziyu Liu Zhenye Lou Yixuan Zhang Xiangjian He Mamba 94 1 0 26 Jul 2025
Co-Seg++: Mutual Prompt-Guided Collaborative Learning for Versatile Medical Segmentation Qing Xu Yuxiang Luo Wenting Duan Zhen Chen 170 3 0 20 Jun 2025
The Four Color Theorem for Cell Instance Segmentation Ye Zhang Yu Zhou Yifeng Wang Jun Xiao Ziyue Wang Yongbing Zhang Jianxu Chen ISeg 187 1 0 11 Jun 2025
GP-MoLFormer-Sim: Test Time Molecular Optimization through Contextual Similarity Guidance Jirí Navrátil Jarret Ross Payel Das Youssef Mroueh Samuel C. Hoffman Vijil Chenthamarakshan Brian M. Belgodere 179 0 0 05 Jun 2025
Uni-AIMS: AI-Powered Microscopy Image Analysis Yanhui Hong Nan Wang Zhiyi Xia Haoyi Tao Xi Fang ... Shengyu Li Ziqi Chen Zezhong Zhang Guolin Ke Linfeng Zhang 158 0 0 11 May 2025
Histo-Miner: Deep Learning based Tissue Features Extraction Pipeline from H&E Whole Slide Images of Cutaneous Squamous Cell Carcinoma Lucas Sancéré Carina Lorenz Doris Helbig Oana-Diana Persa Sonja Dengler ... Martim Laimer Anne Fröhlich Jennifer Landsberg Johannes Brägelmann Katarzyna Bozek 272 0 0 07 May 2025
Automating tumor-infiltrating lymphocyte assessment in breast cancer histopathology images using QuPath: a transparent and accessible machine learning pipeline M. Tafavvoghi L. A. Bongo André Berli Delgado N. Shvetsov Anders Sildnes Line Moi Lill-ToveRasmussen Busund Kajsa Møllersen 219 0 0 23 Apr 2025
APSeg: Auto-Prompt Model with Acquired and Injected Knowledge for Nuclear Instance Segmentation and Classification Liying Xu Hongliang He Wei Han Hanbin Huang Siwei Feng Guohong Fu VLM 189 0 0 03 Apr 2025
CellVTA: Enhancing Vision Foundation Models for Accurate Cell Segmentation and Classification Yang Yang Xijie Xu Yixun Zhou Jie Zheng ViT 153 0 0 01 Apr 2025
A Multi-Stage Auto-Context Deep Learning Framework for Tissue and Nuclei Segmentation and Classification in H&E-Stained Histological Images of Advanced Melanoma Nima Torbati Anastasia Meshcheryakova Ramona Woitek Amirreza Mahbod Diana Mechtcheriakova Amirreza Mahbod 216 2 0 31 Mar 2025
Revisiting Automatic Data Curation for Vision Foundation Models in Digital PathologyInternational Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2025 Boqi Chen Cédric Vincent-Cuaz Lydia A. Schoenpflug Manuel Madeira Lisa Fournier ... D. Thanou V. Koelzer Pascal Frossard Gabriele Campanella Gunnar Rätsch 244 1 0 24 Mar 2025
Cracking the PUMA Challenge in 24 Hours with CellViT++ and nnU-Net Negar Shahamiri Moritz Rempe Lukas Heine Jens Kleesiek Fabian Horst 133 0 0 15 Mar 2025
COIN: Confidence Score-Guided Distillation for Annotation-Free Cell Segmentation Sanghyun Jo Seo Jin Lee Seungwoo Lee Seohyung Hong Hyungseok Seo Kyungsu Kim 334 1 0 14 Mar 2025
Prediction of Frozen Region Growth in Kidney Cryoablation Intervention Using a 3D Flow-Matching Model Siyeop Yoon Y. Oh Matthew Tivnan Qing Xiao Pengfei Jin Sekeun KimHyun Jin Cho Hyun Jin Cho Dufan Wu Raul Uppot Quanzheng Li 266 2 0 06 Mar 2025
A Lightweight and Extensible Cell Segmentation and Classification Model for Whole Slide Images N. Shvetsov T. Kilvaer M. Tafavvoghi Anders Sildnes Kajsa Møllersen Lill-ToveRasmussen Busund L. A. Bongo VLM 296 1 0 26 Feb 2025
Advancing Oyster Phenotype Segmentation with Multi-Network Ensemble and Multi-Scale mechanism Wenli Yang Yanyu Chen Andrew Trotter Byeong Kang 157 1 0 20 Jan 2025
Segmentation of Muscularis Propria in Colon Histopathology Images Using Vision Transformers for Hirschsprung's Disease Youssef Megahed Anthony Fuller Saleh Abou-Alwan Dina El Demellawy Adrian D. C. Chan MedIm 96 3 0 31 Dec 2024
CellSeg1: Robust Cell Segmentation with One Training Image Peilin Zhou Bo Du Yongchao Xu VLM 217 5 0 02 Dec 2024
CellPilotIEEE International Symposium on Biomedical Imaging (ISBI), 2024 Philipp Endres Valentin Koch Julia A. Schnabel Carsten Marr VLM MedIm 225 0 0 23 Nov 2024
Automated Classification of Cell Shapes: A Comparative Evaluation of Shape DescriptorsIEEE International Symposium on Biomedical Imaging (ISBI), 2024 V. Vadori A. Peruffo Jean-Marie Graic L. Finos Enrico Grisan 87 2 0 01 Nov 2024
Evaluating Cell AI Foundation Models in Kidney Pathology with Human-in-the-Loop Enrichment Junlin Guo Siqi Lu C. Cui Ruining Deng Tianyuan Yao ... Catie Chang Mitchell Wilkes Mengmeng Yin Haichun Yang Yuankai Huo MedIm 216 3 0 31 Oct 2024
CoTCoNet: An Optimized Coupled Transformer-Convolutional Network with an Adaptive Graph Reconstruction for Leukemia Detection Chandravardhan Singh Raghaw Arnav Sharma Shubhi Bansal Mohammad Zia Ur Rehman Nagendra Kumar MedIm 138 20 0 11 Oct 2024
MorphoSeg: An Uncertainty-Aware Deep Learning Method for Biomedical Segmentation of Complex Cellular Morphologies Tianhao Zhang Heather J. McCourty Berardo M. Sanchez-Tafolla Anton Nikolaev Lyudmila Mihaylova 151 1 0 25 Sep 2024
NuSegDG: Integration of Heterogeneous Space and Gaussian Kernel for Domain-Generalized Nuclei SegmentationKnowledge-Based Systems (KBS), 2024 Zhenye Lou Qing Xu Zekun Jiang Xiangjian He Z. Chen Yi Wang Chenxin Li Maggie M. He Wenting Duan 314 11 0 21 Aug 2024
NuLite -- Lightweight and Fast Model for Nuclei Instance Segmentation and Classification C. Tommasino Cristiano Russo A. M. Rinaldi 186 2 0 03 Aug 2024
Exploiting Scale-Variant Attention for Segmenting Small Medical Objects Wei Dai Rui Liu Z. Wu Tianyi Wu Min Wang Junxian Zhou Yixuan Yuan Jun Liu 306 0 0 10 Jul 2024
HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis Guillaume Jaume Paul Doucet Andrew H. Song Ming Y. Lu Cristina Almagro-Pérez ... Anurag J. Vaidya Richard J. Chen Drew F. K. Williamson Ahrong Kim Faisal Mahmood 260 75 0 23 Jun 2024
STimage-1K4M: A histopathology image-gene expression dataset for spatial transcriptomics Jiawen Chen Muqing Zhou Wenrong Wu Jinwei Zhang Yun Li Didong Li 211 23 0 10 Jun 2024
Immunocto: a massive immune cell database auto-generated for histopathology Mikaël Simard Zhuoyan Shen Maria A. Hawkins C. Collins-Fekete Maria A. Hawkins Charles-Antoine Collins-Fekete 221 3 0 03 Jun 2024
BiomedParse: a biomedical foundation model for image parsing of everything everywhere all at once Theodore Zhao Yu Gu Jianwei Yang Naoto Usuyama Ho Hin Lee ... B. Piening Carlo Bifulco Mu-Hsin Wei Hoifung Poon Sheng Wang MedIm 217 110 0 21 May 2024
How to build the best medical image segmentation algorithm using foundation models: a comprehensive empirical study with Segment Anything Model Han Gu Haoyu Dong Jichen Yang Maciej A. Mazurowski MedIm VLM 311 38 0 15 Apr 2024
ViTGaze: Gaze Following with Interaction Features in Vision Transformers Yuehao Song Xinggang Wang Jingfeng Yao Wenyu Liu Jinglin Zhang Xiangmin Xu ViT 165 12 0 19 Mar 2024
Morphological Profiling for Drug Discovery in the Era of Deep Learning Qiaosi Tang R. Ratnayake Gustavo Seabra Zhe Jiang Ruogu Fang ... Tamer Kahveci Jiang Bian Chenglong Li H. Luesch Yanjun Li 212 9 0 13 Dec 2023
A Recent Survey of Vision Transformers for Medical Image SegmentationIEEE Access (IEEE Access), 2023 Asifullah Khan Zunaira Rauf Abdul Rehman Khan Saima Rathore Dr. Saddam Hussain Khan ... Suleman Qamar Umme Hani Asif Faiza Babar Khan A. Majid Jeonghwan Gwak ViT MedIm 288 35 0 01 Dec 2023
Unleashing the Power of Prompt-driven Nucleus Instance SegmentationEuropean Conference on Computer Vision (ECCV), 2023 Honglin Li Yunlong Zhang Kai Yao Chenglu Zhu Sunyi Zheng Jingxiong Li Honglin Li Yuxuan Sun Ruizhe Guo Lin Yang 297 23 0 27 Nov 2023
A General-Purpose Self-Supervised Model for Computational Pathology Richard J. Chen Tong Ding Ming Y. Lu Drew F. K. Williamson Guillaume Jaume ... Judy J. Wang Walt Williams L. Le Georg Gerber Faisal Mahmood MedIm 287 53 0 29 Aug 2023