Dirichlet Flow Matching with Applications to DNA Sequence Design

Dirichlet Flow Matching with Applications to DNA Sequence Design

8 February 2024

Regina Barzilay

Papers citing "Dirichlet Flow Matching with Applications to DNA Sequence Design"

10 / 10 papers shown

Title
DDPS: Discrete Diffusion Posterior Sampling for Paths in Layered Graphs Hao Luan See-Kiong Ng Chun Kai Ling 46 0 0 29 Apr 2025
HELM: Hierarchical Encoding for mRNA Language Modeling Mehdi Yazdani-Jahromi Mangal Prakash Tommaso Mansi Artem Moskalev Rui Liao 78 2 0 13 Mar 2025
Fine-Tuning Discrete Diffusion Models via Reward Optimization with Applications to DNA and Protein Design Chenyu Wang Masatoshi Uehara Yichun He Amy Wang Tommaso Biancalani Avantika Lal Tommi Jaakkola Sergey Levine Hanchen Wang Aviv Regev 48 8 0 17 Oct 2024
Generative Assignment Flows for Representing and Learning Joint Distributions of Discrete Data Bastian Boll Daniel Gonzalez-Alvarado Stefania Petra Christoph Schnörr 34 4 0 06 Jun 2024
Unlocking Guidance for Discrete State-Space Diffusion and Flow Models Hunter Nisonoff Junhao Xiong Stephan Allenspach Jennifer Listgarten 55 29 0 03 Jun 2024
Categorical Flow Matching on Statistical Manifolds Chaoran Cheng Jiahan Li Jian-wei Peng Ge Liu 53 10 0 26 May 2024
One-step Diffusion with Distribution Matching Distillation Tianwei Yin Michael Gharbi Richard Zhang Eli Shechtman Frédo Durand William T. Freeman Taesung Park DiffM 124 215 0 30 Nov 2023
Latent Diffusion Model for DNA Sequence Generation Zehui Li Yuhao Ni Tim August B. Huygelen Akashaditya Das Guoxuan Xia Guy-Bart Stan Yiren Zhao 30 9 0 09 Oct 2023
Multisample Flow Matching: Straightening Flows with Minibatch Couplings Aram-Alexandre Pooladian Heli Ben-Hamu Carles Domingo-Enrich Brandon Amos Y. Lipman Ricky T. Q. Chen 60 125 0 28 Apr 2023
A Continuous Time Framework for Discrete Denoising Models Andrew Campbell Joe Benton Valentin De Bortoli Tom Rainforth George Deligiannidis Arnaud Doucet DiffM 172 132 0 30 May 2022