Transcriptomics-guided Slide Representation Learning in Computational Pathology

19 May 2024

Drew F. K. Williamson

Papers citing "Transcriptomics-guided Slide Representation Learning in Computational Pathology"

22 / 22 papers shown

Title
Teaching pathology foundation models to accurately predict gene expression with parameter efficient knowledge transfer Shi Pan Jianan Chen Maria Secrier 16 0 0 09 Apr 2025
GECKO: Gigapixel Vision-Concept Contrastive Pretraining in Histopathology S. Kapse Pushpak Pati Srikar Yellapragada Srijan Das Rajarsi R. Gupta Joel H. Saltz Dimitris Samaras Prateek Prasanna VLM 41 0 0 01 Apr 2025
PathoHR: Breast Cancer Survival Prediction on High-Resolution Pathological Images Y. Luo Shiru Wang J. Liu Jiaxuan Xiao Rundong Xue Zeyu Zhang Hao Zhang Yu Lu Yang Zhao Yutong Xie 42 0 0 23 Mar 2025
ModalTune: Fine-Tuning Slide-Level Foundation Models with Multi-Modal Information for Multi-task Learning in Digital Pathology Vishwesh Ramanathan Tony Xu Pushpak Pati Faruk Ahmed Maged Goubran Anne L. Martel 43 0 0 21 Mar 2025
Multi-Modal Foundation Models for Computational Pathology: A Survey Dong Li Guihong Wan Xintao Wu Xinyu Wu Xiaohui Chen Yi He Christine G. Lian Peter K. Sorger Yevgeniy R. Semenov Chen Zhao MedIm 42 0 0 12 Mar 2025
Towards Robust Multimodal Representation: A Unified Approach with Adaptive Experts and Alignment Nazanin Moradinasab S. Sengupta Jiebei Liu Sana Syed Donald Brown 58 0 0 12 Mar 2025
MIRROR: Multi-Modal Pathological Self-Supervised Representation Learning via Modality Alignment and Retention Tianyi Wang Jianan Fan Dingxin Zhang Dongnan Liu Yong-quan Xia Heng Huang Weidong Cai 34 0 0 01 Mar 2025
AI-powered virtual tissues from spatial proteomics for clinical diagnostics and biomedical discovery Johann Wenckstern Eeshaan Jain Kiril Vasilev Matteo Pariset Andreas Wicki Gabriele Gut Charlotte Bunne 32 1 0 10 Jan 2025
Graph Domain Adaptation with Dual-branch Encoder and Two-level Alignment for Whole Slide Image-based Survival Prediction Yuntao Shou Peiqiang Yan Xingjian Yuan Xiangyong Cao Qian Zhao Deyu Meng OOD MedIm 83 5 0 21 Nov 2024
Diagnostic Text-guided Representation Learning in Hierarchical Classification for Pathological Whole Slide Image Jiawen Li Qiehe Sun Renao Yan Yizhi Wang Yuqiu Fu Yani Wei Tian Guan Huijuan Shi Yonghonghe He Anjia Han 31 3 0 16 Nov 2024
Evaluating Deep Regression Models for WSI-Based Gene-Expression Prediction Fredrik K. Gustafsson Mattias Rantalainen 21 0 0 01 Oct 2024
Interpretable Vision-Language Survival Analysis with Ordinal Inductive Bias for Computational Pathology Pei Liu Luping Ji Jiaxiang Gou Bo Fu Mao Ye 21 2 0 14 Sep 2024
Multistain Pretraining for Slide Representation Learning in Pathology Guillaume Jaume Anurag J. Vaidya Andrew Zhang Andrew H. Song Richard J. Chen S. Sahai Dandan Mo Emilio Madrigal L. Le Faisal Mahmood 28 11 0 05 Aug 2024
PathAlign: A vision-language model for whole slide images in histopathology Faruk Ahmed Andrew Sellergren Lin Yang Shawn Xu Boris Babenko ... S. Shetty Daniel Golden Yun-hui Liu David F. Steiner Ellery Wulczyn LM&MA VLM 29 13 0 27 Jun 2024
HEST-1k: A Dataset for Spatial Transcriptomics and Histology Image Analysis Guillaume Jaume Paul Doucet Andrew H. Song Ming Y. Lu Cristina Almagro-Pérez ... Anurag J. Vaidya Richard J. Chen Drew F. K. Williamson Ahrong Kim Faisal Mahmood 36 28 0 23 Jun 2024
Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology Andrew H. Song Richard J. Chen Tong Ding Drew F. K. Williamson Guillaume Jaume Faisal Mahmood MedIm 35 27 0 19 May 2024
Task-specific Fine-tuning via Variational Information Bottleneck for Weakly-supervised Pathology Whole Slide Image Classification Honglin Li Chenglu Zhu Yunlong Zhang Yuxuan Sun Zhongyi Shui Wenwei Kuang S. Zheng L. Yang 61 56 0 15 Mar 2023
BLIP-2: Bootstrapping Language-Image Pre-training with Frozen Image Encoders and Large Language Models Junnan Li Dongxu Li Silvio Savarese Steven C. H. Hoi VLM MLLM 244 4,186 0 30 Jan 2023
RankMe: Assessing the downstream performance of pretrained self-supervised representations by their rank Q. Garrido Randall Balestriero Laurent Najman Yann LeCun SSL 39 71 0 05 Oct 2022
Masked Autoencoders Are Scalable Vision Learners Kaiming He Xinlei Chen Saining Xie Yanghao Li Piotr Dollár Ross B. Girshick ViT TPM 258 7,337 0 11 Nov 2021
Emerging Properties in Self-Supervised Vision Transformers Mathilde Caron Hugo Touvron Ishan Misra Hervé Jégou Julien Mairal Piotr Bojanowski Armand Joulin 283 5,723 0 29 Apr 2021
Scaling Up Visual and Vision-Language Representation Learning With Noisy Text Supervision Chao Jia Yinfei Yang Ye Xia Yi-Ting Chen Zarana Parekh Hieu H. Pham Quoc V. Le Yun-hsuan Sung Zhen Li Tom Duerig VLM CLIP 293 3,683 0 11 Feb 2021