BioDiscoveryAgent: An AI Agent for Designing Genetic Perturbation Experiments

BioDiscoveryAgent: An AI Agent for Designing Genetic Perturbation Experiments

27 May 2024

Yusuf Roohani

Percy Liang

Jure Leskovec

Papers citing "BioDiscoveryAgent: An AI Agent for Designing Genetic Perturbation Experiments"

16 / 16 papers shown

Title
ToolRL: Reward is All Tool Learning Needs Cheng Qian Emre Can Acikgoz Qi He Hongru Wang X. Chen Dilek Hakkani-Tür Gökhan Tür Heng Ji OffRL LRM 25 3 0 16 Apr 2025
Towards Scientific Intelligence: A Survey of LLM-based Scientific Agents Shuo Ren Pu Jian Zhenjiang Ren Chunlin Leng Can Xie Jiajun Zhang LLMAG AI4CE 57 0 0 31 Mar 2025
A Survey on the Optimization of Large Language Model-based Agents Shangheng Du Jiabao Zhao Jinxin Shi Zhentao Xie Xin Jiang Yanhong Bai Liang He LLMAG LM&Ro LM&MA 123 0 0 16 Mar 2025
Contextualizing biological perturbation experiments through language Menghua Wu Russell Littman Jacob Levine Lin Qiu Tommaso Biancalani David Richmond Jan-Christian Huetter 31 0 0 28 Feb 2025
IGDA: Interactive Graph Discovery through Large Language Model Agents Alex Havrilla David Alvarez-Melis Nicolò Fusi AI4CE 40 0 0 24 Feb 2025
BioMaze: Benchmarking and Enhancing Large Language Models for Biological Pathway Reasoning Haiteng Zhao Chang Ma FangZhi Xu Lingpeng Kong Zhi-Hong Deng LRM 42 2 0 23 Feb 2025
RAG-Enhanced Collaborative LLM Agents for Drug Discovery Namkyeong Lee Edward De Brouwer Ehsan Hajiramezanali Tommaso Biancalani Chanyoung Park Gabriele Scalia 34 0 0 22 Feb 2025
DrugAgent: Automating AI-aided Drug Discovery Programming through LLM Multi-Agent Collaboration Sizhe Liu Y. Lu Siyu Chen Xiyang Hu Jieyu Zhao Tianfan Fu Yue Zhao LLMAG 77 6 0 24 Nov 2024
How to Build the Virtual Cell with Artificial Intelligence: Priorities and Opportunities Charlotte Bunne Yusuf Roohani Yanay Rosen Ankit Gupta Xikun Zhang ... Theofanis Karaletsos Aviv Regev Emma Lundberg J. Leskovec Stephen R. Quake 42 18 0 18 Sep 2024
Empowering Biomedical Discovery with AI Agents Shanghua Gao Ada Fang Yepeng Huang Valentina Giunchiglia Ayush Noori Jonathan Richard Schwarz Yasha Ektefaie Jovana Kondic Marinka Zitnik LLMAG AI4CE 36 62 0 03 Apr 2024
Large Language Models to Enhance Bayesian Optimization Tennison Liu Nicolás Astorga Nabeel Seedat M. Schaar 58 44 0 06 Feb 2024
Zero-Shot Clinical Trial Patient Matching with LLMs Michael Wornow Alejandro Lozano Dev Dash Jenelle A. Jindal Kenneth W. Mahaffey Nigam H. Shah 33 26 0 05 Feb 2024
PaperQA: Retrieval-Augmented Generative Agent for Scientific Research Jakub Lála Odhran O'Donoghue Aleksandar Shtedritski Sam Cox Samuel G. Rodriques Andrew D. White RALM 72 69 0 08 Dec 2023
DiscoBAX: Discovery of Optimal Intervention Sets in Genomic Experiment Design Clare Lyle Arash Mehrjou Pascal Notin Andrew Jesson Stefan Bauer Y. Gal Patrick Schwab 41 10 0 07 Dec 2023
Generative Agents: Interactive Simulacra of Human Behavior J. Park Joseph C. O'Brien Carrie J. Cai Meredith Ringel Morris Percy Liang Michael S. Bernstein LM&Ro AI4CE 215 1,701 0 07 Apr 2023
ReAct: Synergizing Reasoning and Acting in Language Models Shunyu Yao Jeffrey Zhao Dian Yu Nan Du Izhak Shafran Karthik Narasimhan Yuan Cao LLMAG ReLM LRM 223 2,413 0 06 Oct 2022