On the Compactness, Efficiency, and Representation of 3D Convolutional Networks: Brain Parcellation as a Pretext Task

6 July 2017

Guotai Wang

Sebastien Ourselin

Papers citing "On the Compactness, Efficiency, and Representation of 3D Convolutional Networks: Brain Parcellation as a Pretext Task"

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Title
Beyond one-hot encoding? Journey into compact encoding for large multi-class segmentation Aaron Kujawa Thomas C Booth Tom Vercauteren MQ 72 0 0 01 Oct 2025
A Comprehensive Study on Medical Image Segmentation using Deep Neural NetworksInternational Journal of Advanced Computer Science and Applications (IJACSA), 2025 Loan Dao Ngoc Quoc Ly 260 11 0 04 Jun 2025
Uncertainty-Guided Appearance-Motion Association Network for Out-of-Distribution Action DetectionConference on Multimedia Information Processing and Retrieval (MIPR), 2024 Xiang Fang Arvind Easwaran B. Genest 358 7 0 16 Sep 2024
X-Diffusion: Generating Detailed 3D MRI Volumes From a Single Image Using Cross-Sectional Diffusion Models Emmanuelle Bourigault Abdullah Hamdi Amir Jamaludin MedIm 404 4 0 30 Apr 2024
Label merge-and-split: A graph-colouring approach for memory-efficient brain parcellation Aaron Kujawa Reuben Dorent Sebastien Ourselin Tom Vercauteren VLM 230 3 0 16 Apr 2024
A dynamic interactive learning framework for automated 3D medical image segmentation Mu Tian Xiaohui Chen Yi Gao 125 1 0 11 Dec 2023
Self-Supervised Versus Supervised Training for Segmentation of Organoid Images Asmaa Haja Eric Brouwer Lambert Schomaker 98 1 0 19 Nov 2023
DEFN: Dual-Encoder Fourier Group Harmonics Network for Three-Dimensional Indistinct-Boundary Object SegmentationExpert systems with applications (ESWA), 2023 Xiaohua Jiang Yihao Guo Jian Huang Yuting Wu Meiyi Luo ... Xingru Huang Hong He Shaowei Jiang Jing Ye Mang Xiao 141 0 0 01 Nov 2023
3D Brainformer: 3D Fusion Transformer for Brain Tumor Segmentation Rui Nian Guoyao Zhang Yao Sui Yuqi Qian Qiuying Li Mingzhang Zhao Jianhui Li Ali Gholipour Simon K. Warfield MedIm 115 6 0 28 Apr 2023
A Review of Uncertainty Estimation and its Application in Medical Imaging K. Zou Zhihao Chen Xuedong Yuan Xiaojing Shen Meng Wang Huazhu Fu UQCV 266 126 0 16 Feb 2023
MTNeuro: A Benchmark for Evaluating Representations of Brain Structure Across Multiple Levels of AbstractionNeural Information Processing Systems (NeurIPS), 2023 Jorge Quesada Lakshmi Sathidevi Ran Liu Nauman Ahad Joy M. Jackson ... Matthew Y Jin Carolina Urzay William R. Gray Roncal Erik C. Johnson Eva L. Dyer 324 5 0 01 Jan 2023
Lesion-Specific Prediction with Discriminator-Based Supervised Guided Attention Module Enabled GANs in Multiple Sclerosis Jueqi Wang Derek Berger Erin L. Mazerolle J. Delamer J. Levman MedIm 141 0 0 30 Aug 2022
Distance-based detection of out-of-distribution silent failures for Covid-19 lung lesion segmentation Jiamin Liang Yuhao Huang Haoming Li Shuangchi He Xindi Hu Zejian Chen Isabel Kaltenborn Dong Ni OOD 188 52 0 05 Aug 2022
CTooth: A Fully Annotated 3D Dataset and Benchmark for Tooth Volume Segmentation on Cone Beam Computed Tomography ImagesInternational Conference on Intelligent Robotics and Applications (ICIRA), 2022 Weiwei Cui Yaqi Wang Qianni Zhang Huiyu Zhou Dansheg Song Xingyong Zuo Gangyong Jia Liaoyuan Zeng 3DPC 93 23 0 17 Jun 2022
Segmentation in large-scale cellular electron microscopy with deep learning: A literature survey A. Aswath A. Alsahaf B. Giepmans George Azzopardi 283 51 0 14 Jun 2022
An Algorithm for the Labeling and Interactive Visualization of the Cerebrovascular System of Ischemic StrokesBiomedical engineering and physics express (BEPE), 2022 Florian Thamm Markus Jürgens O. Taubmann Aleksandra Thamm Leonhard Rist H. Ditt Andreas Maier 68 4 0 26 Apr 2022
Joint brain tumor segmentation from multi MR sequences through a deep convolutional neural network Farzaneh Dehghani A. Karimian Hossein ARABI 75 14 0 07 Mar 2022
A novel shape-based loss function for machine learning-based seminal organ segmentation in medical imaging Reza Karimzadeh E. Fatemizadeh H. Arabi MedIm 89 21 0 07 Mar 2022
Does prior knowledge in the form of multiple low-dose PET images (at different dose levels) improve standard-dose PET prediction?Nuclear Science Symposium and Medical Imaging Conference (NSS/MIC), 2021 Behnoush Sanaei R. Faghihi Hossein ARABI MedIm 52 8 0 22 Feb 2022
Cross-Modality Deep Feature Learning for Brain Tumor SegmentationPattern Recognition (Pattern Recogn.), 2021 Dingwen Zhang Guohai Huang Qiang Zhang Jungong Han Junwei Han Yizhou Yu 158 245 0 07 Jan 2022
Lung-Originated Tumor Segmentation from Computed Tomography Scan (LOTUS) Benchmark Parnian Afshar Arash Mohammadi Konstantinos N. Plataniotis Keyvan Farahani J. Kirby ... Zhong Guang Runze Zhang Sumohana S. Channappayya Shashank Gupta Chander Dev 83 1 0 03 Jan 2022
Generalized Wasserstein Dice Loss, Test-time Augmentation, and Transformers for the BraTS 2021 challenge Lucas Fidon Antonio Terpin Ivan Ezhov Johannes C. Paetzold Sébastien Ourselin Tom Vercauteren ViT MedIm 134 10 0 24 Dec 2021
Interactive Medical Image Segmentation with Self-Adaptive Confidence CalibrationFrontiers of Information Technology & Electronic Engineering (FITEE), 2021 Wenhao Li Qisen Xu Chuyun Shen Bin Hu Fengping Zhu Yuxin Li Bo Jin Xiangfeng Wang 151 8 0 15 Nov 2021
Simulating Realistic MRI variations to Improve Deep Learning model and visual explanations using GradCAM M. I. Patel Shrey Singla Razeem Ahmad Ali Mattathodi Sumit Sharma Deepam Gautam Srinivasa Rao Kundeti MedIm 88 1 0 01 Nov 2021
Whole Brain Segmentation with Full Volume Neural Network Yeshu Li Jianwei Cui Yilun Sheng Xiao Liang Jingdong Wang E. Chang Yan Xu 238 15 0 29 Oct 2021
Semi-Supervised Segmentation of Radiation-Induced Pulmonary Fibrosis from Lung CT Scans with Multi-Scale Guided Dense Attention Guotai Wang Shuwei Zhai G. Lasio Baoshe Zhang B. Yi Shifeng Chen T. MacVittie Dimitris N. Metaxas Jinghao Zhou Shaoting Zhang MedIm 166 68 0 29 Sep 2021
CAN3D: Fast 3D Medical Image Segmentation via Compact Context Aggregation Wei Dai B. Woo Siyu Liu Matthew Marques Craig B. Engstrom P. Greer Stuart Crozier Jason Dowling Shekhar S. Chandra 183 22 0 12 Sep 2021
Medical Image Segmentation with 3D Convolutional Neural Networks: A Survey S. Niyas S. Pawan Anand Kumar Jeny Rajan MedIm 205 115 0 19 Aug 2021
Automatic cerebral hemisphere segmentation in rat MRI with lesions via attention-based convolutional neural networks Juan Miguel Valverde Artem Shatillo Riccardo De Feo Jussi Tohka MedIm 196 6 0 04 Aug 2021
Recurrent U-net for automatic pelvic floor muscle segmentation on 3D ultrasound F. V. D. Noort B. Sirmaçek C. Slump 121 8 0 29 Jul 2021
Frequency-Supervised MR-to-CT Image Synthesis Zenglin Shi Pascal Mettes Guoyan Zheng Cees G. M. Snoek OOD MedIm 47 11 0 19 Jul 2021
Federated Whole Prostate Segmentation in MRI with Personalized Neural ArchitecturesInternational Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2021 H. Roth Dong Yang Wenqi Li Andriy Myronenko Wentao Zhu Ziyue Xu Xiaosong Wang Daguang Xu FedML 190 28 0 16 Jul 2021
DINs: Deep Interactive Networks for Neurofibroma Segmentation in Neurofibromatosis Type 1 on Whole-Body MRIIEEE journal of biomedical and health informatics (JBHI), 2021 Jian-Wei Zhang Wei Chen K. I. Ly Xubin Zhang Fan Yan J. Jordan G. Harris S. Plotkin Pengyi Hao W. Cai 107 10 0 07 Jun 2021
UNETR: Transformers for 3D Medical Image SegmentationIEEE Workshop/Winter Conference on Applications of Computer Vision (WACV), 2021 Ali Hatamizadeh Yucheng Tang Vishwesh Nath Dong Yang Andriy Myronenko Bennett Landman H. Roth Daguang Xu ViT MedIm 466 2,150 0 18 Mar 2021
Atlas-aware ConvNetfor Accurate yet Robust Anatomical SegmentationAsian Conference on Machine Learning (ACML), 2021 Yuan Liang Weinan Song Jiawei Yang Liang Qiu Kun Wang Lei He MedIm 93 3 0 02 Feb 2021
Densely Connected Recurrent Residual (Dense R2UNet) Convolutional Neural Network for Segmentation of Lung CT Images Kaushik Dutta SSeg 90 15 0 01 Feb 2021
Automatic Segmentation of Gross Target Volume of Nasopharynx Cancer using Ensemble of Multiscale Deep Neural Networks with Spatial AttentionNeurocomputing (Neurocomputing), 2021 Haochen Mei Wenhui Lei Ran Gu Shan Ye Zhengwentai Sun Shichuan Zhang Guotai Wang 166 28 0 27 Jan 2021
CA-Net: Comprehensive Attention Convolutional Neural Networks for Explainable Medical Image SegmentationIEEE Transactions on Medical Imaging (TMI), 2020 Ran Gu Guotai Wang Tao Song Rui Huang Michael Aertsen Jan Deprest Sébastien Ourselin Tom Vercauteren Shaoting Zhang SSeg 220 580 0 22 Sep 2020
Learning joint segmentation of tissues and brain lesions from task-specific hetero-modal domain-shifted datasets Reuben Dorent Thomas C Booth Wenqi Li Carole H. Sudre S. Kafiabadi M. Jorge Cardoso Sebastien Ourselin Tom Vercauteren 166 28 0 08 Sep 2020
m2caiSeg: Semantic Segmentation of Laparoscopic Images using Convolutional Neural Networks Salman Maqbool Aqsa Riaz Hasan Sajid Osman Hasan 188 33 0 23 Aug 2020
Enhancing Fiber Orientation Distributions using convolutional Neural Networks Oeslle Lucena S. Vos V. Vakharia J. Duncan K. Ashkan Rachel Sparks Sebastien Ourselin 131 3 0 12 Aug 2020
Simulation of Brain Resection for Cavity Segmentation Using Self-Supervised and Semi-Supervised Learning Fernando Pérez-García R. Rodionov Ali Alim-Marvasti Rachel Sparks J. Duncan Sébastien Ourselin 73 16 0 28 Jun 2020
Robust Automatic Whole Brain Extraction on Magnetic Resonance Imaging of Brain Tumor Patients using Dense-Vnet S. Ranjbar K. Singleton L. Curtin Cassandra R. Rickertsen L. Paulson Leland S. Hu J. R. Mitchell Kristin R Swanson 60 7 0 04 Jun 2020
Eisen: a python package for solid deep learning Frank Mancolo 92 3 0 18 Mar 2020
Multi-level Context Gating of Embedded Collective Knowledge for Medical Image Segmentation Maryam Asadi-Aghbolaghi Reza Azad M. Fathy Sergio Escalera SSeg 186 68 0 10 Mar 2020
TorchIO: A Python library for efficient loading, preprocessing, augmentation and patch-based sampling of medical images in deep learning Fernando Pérez-García Rachel Sparks Sébastien Ourselin MedIm LM&MA 402 492 0 09 Mar 2020
MRI Super-Resolution with GAN and 3D Multi-Level DenseNet: Smaller, Faster, and Better Yuhua Chen A. Christodoulou Zhengwei Zhou Feng Shi Yibin Xie Debiao Li MedIm SupR 101 52 0 02 Mar 2020
ACEnet: Anatomical Context-Encoding Network for Neuroanatomy Segmentation Yuemeng Li Hongming Li Yong-Xian Fan 3DPC 324 33 0 13 Feb 2020
Evaluation of Multi-Slice Inputs to Convolutional Neural Networks for Medical Image SegmentationMedical Physics (Lancaster) (MPL), 2019 Minh H. Vu G. Grimbergen T. Nyholm Tommy Löfstedt SSeg 187 38 0 19 Dec 2019
Iteratively-Refined Interactive 3D Medical Image Segmentation with Multi-Agent Reinforcement LearningComputer Vision and Pattern Recognition (CVPR), 2019 X. Liao Wenhao Li Qisen Xu Xiangfeng Wang Bo Jin Xiaoyun Zhang Ya Zhang Yanfeng Wang 194 93 0 23 Nov 2019