On the Compactness, Efficiency, and Representation of 3D Convolutional Networks: Brain Parcellation as a Pretext Task

6 July 2017

Guotai Wang

Sebastien Ourselin

Papers citing "On the Compactness, Efficiency, and Representation of 3D Convolutional Networks: Brain Parcellation as a Pretext Task"

39 / 89 papers shown

Title
AssemblyNet: A large ensemble of CNNs for 3D Whole Brain MRI SegmentationNeuroImage (NeuroImage), 2019 Pierrick Coupé Boris Mansencal Michael Clement Rémi Giraud B. D. D. Senneville T. Thong Vincent Lepetit J. V. Manjón 285 156 0 20 Nov 2019
CAI4CAI: The Rise of Contextual Artificial Intelligence in Computer Assisted InterventionsProceedings of the IEEE (Proc. IEEE), 2019 Tom Vercauteren Mathias Unberath N. Padoy Nassir Navab 181 124 0 20 Oct 2019
CompareNet: Anatomical Segmentation Network with Deep Non-local Label FusionInternational Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2019 Yuan Liang Weinan Song J. Dym Kun Wang Lei He 3DPC 115 6 0 10 Oct 2019
CEREBRUM: a fast and fully-volumetric Convolutional Encoder-decodeR for weakly-supervised sEgmentation of BRain strUctures from out-of-the-scanner MRI Dennis Bontempi Sergio Benini A. Signoroni M. Svanera L. Muckli 3DV 228 30 0 11 Sep 2019
Stochastic Filter Groups for Multi-Task CNNs: Learning Specialist and Generalist Convolution KernelsIEEE International Conference on Computer Vision (ICCV), 2019 Felix J. S. Bragman Ryutaro Tanno Sebastien Ourselin Daniel C. Alexander M. Jorge Cardoso 145 96 0 26 Aug 2019
Improved MR to CT synthesis for PET/MR attenuation correction using Imitation Learning Kerstin Kläser Thomas Varsavsky P. Markiewicz Tom Vercauteren David Atkinson K. Thielemans B. Hutton M. Jorge Cardoso Sebastien Ourselin MedIm OOD 100 15 0 21 Aug 2019
Enhanced generative adversarial network for 3D brain MRI super-resolutionIEEE Workshop/Winter Conference on Applications of Computer Vision (WACV), 2019 Jiancong Wang Yuhua Chen Yifan Wu Jianbo Shi J. Gee MedIm GAN 126 74 0 10 Jul 2019
Learning joint lesion and tissue segmentation from task-specific hetero-modal datasetsInternational Conference on Medical Imaging with Deep Learning (MIDL), 2019 Reuben Dorent Wenqi Li J. Ekanayake Sebastien Ourselin Tom Vercauteren 124 4 0 07 Jul 2019
Permutohedral Attention Module for Efficient Non-Local Neural NetworksInternational Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI), 2019 Samuel Joutard Reuben Dorent A. Isaac Sebastien Ourselin Tom Vercauteren Marc Modat 116 11 0 01 Jul 2019
Feature-Fused Context-Encoding Network for Neuroanatomy Segmentation Yuemeng Li Hangfan Liu Hongming Li Yong-Xian Fan MedIm 109 1 0 07 May 2019
Standardized Assessment of Automatic Segmentation of White Matter Hyperintensities and Results of the WMH Segmentation Challenge Hugo J. Kuijf J. M. Biesbroek J. de Bresser R. Heinen Simon Andermatt ... Christopher P L H Chen W. M. van der Flier F. Barkhof M. Viergever G. Biessels 174 293 0 01 Apr 2019
3D Whole Brain Segmentation using Spatially Localized Atlas Network Tiles Yuankai Huo Zhoubing Xu Yunxi Xiong Katherine Aboud P. Parvathaneni Shunxing Bao Camilo Bermudez Susan M. Resnick L. Cutting Bennett A. Landman 151 273 0 28 Mar 2019
PSACNN: Pulse Sequence Adaptive Fast Whole Brain Segmentation Amod Jog Andrew Hoopes Douglas N. Greve Koen van Leemput Bruce Fischl OOD 180 38 0 17 Jan 2019
Reproducibility Evaluation of SLANT Whole Brain Segmentation Across Clinical Magnetic Resonance Imaging Protocols Yunxi Xiong Yuankai Huo Jiachen Wang L. Davis M. McHugo Bennett A. Landman 80 12 0 07 Jan 2019
Cascaded V-Net using ROI masks for brain tumor segmentation Adrià Casamitjana Hugo J. Kuijf Bjoern Menze M. Reyes Verónica Vilaplana 119 199 0 30 Dec 2018
Holistic Decomposition Convolution for Effective Semantic Segmentation of 3D MR Images G. Zeng Guoyan Zheng 106 3 0 24 Dec 2018
3D multirater RCNN for multimodal multiclass detection and characterisation of extremely small objects Carole H. Sudre B. G. Anson S. Ingala C. Lane Daniel Jimenez L. Haider Thomas Varsavsky Lorna Smith H. Jäger M. Jorge Cardoso 112 21 0 21 Dec 2018
Knowing what you know in brain segmentation using Bayesian deep neural networks Patrick McClure Nao Rho J. Lee Jakub R. Kaczmarzyk C. Zheng Satrajit S. Ghosh D. Nielson Adam G. Thomas P. Bandettini Francisco Pereira UQCV 3DV BDL 196 56 0 03 Dec 2018
An overview of deep learning in medical imaging focusing on MRIZeitschrift für Medizinische Physik (Z Med Phys), 2018 A. Lundervold A. Lundervold OOD 298 1,796 0 25 Nov 2018
Deep Boosted Regression for MR to CT Synthesis Kerstin Kläser P. Markiewicz M. Ranzini Wenqi Li Marc Modat B. Hutton David Atkinson K. Thielemans M. Jorge Cardoso Sebastien Ourselin OOD MedIm 76 21 0 22 Aug 2018
Pulse Sequence Resilient Fast Brain Segmentation Amod Jog Bruce Fischl OOD 94 17 0 30 Jul 2018
Aleatoric uncertainty estimation with test-time augmentation for medical image segmentation with convolutional neural networks Guotai Wang Wenqi Li Michael Aertsen Jan Deprest Sebastien Ourselin Tom Vercauteren UQCV MedIm OOD 294 650 0 19 Jul 2018
PIMMS: Permutation Invariant Multi-Modal Segmentation Thomas Varsavsky Zach Eaton-Rosen Carole H. Sudre P. Nachev M. Jorge Cardoso 127 24 0 17 Jul 2018
Towards safe deep learning: accurately quantifying biomarker uncertainty in neural network predictions Zach Eaton-Rosen Felix J. S. Bragman Sotirios Bisdas Sebastien Ourselin M. Jorge Cardoso UQCV 103 91 0 22 Jun 2018
Uncertainty in multitask learning: joint representations for probabilistic MR-only radiotherapy planning Felix J. S. Bragman Ryutaro Tanno Zach Eaton-Rosen Wenqi Li D. Hawkes Sebastien Ourselin Daniel C. Alexander J. McClelland M. Jorge Cardoso UQCV 130 52 0 18 Jun 2018
Spatially Localized Atlas Network Tiles Enables 3D Whole Brain Segmentation from Limited Data Yuankai Huo Zhoubing Xu Katherine Aboud P. Parvathaneni Shunxing Bao Camilo Bermudez Susan M. Resnick L. Cutting Bennett A. Landman 163 33 0 01 Jun 2018
Distributed Weight Consolidation: A Brain Segmentation Case Study Patrick McClure C. Zheng Jakub R. Kaczmarzyk John Rogers-Lee Satrajit S. Ghosh D. Nielson P. Bandettini Francisco Pereira 270 29 0 28 May 2018
An application of cascaded 3D fully convolutional networks for medical image segmentation H. Roth H. Oda Xiangrong Zhou N. Shimizu Ying Yang Y. Hayashi M. Oda M. Fujiwara K. Misawa K. Mori 157 284 0 14 Mar 2018
Recurrent Residual Convolutional Neural Network based on U-Net (R2U-Net) for Medical Image Segmentation Md. Zahangir Alom Mahmudul Hasan C. Yakopcic T. Taha V. Asari SSeg 381 1,156 0 20 Feb 2018
Automatic segmentation method of pelvic floor levator hiatus in ultrasound using a self-normalising neural network E. Bonmati Yipeng Hu Nikhil Sindhwani H. Dietz Jan D'hooge D. Barratt Jan Deprest Tom Vercauteren 112 33 0 18 Dec 2017
Deep convolutional neural networks for brain image analysis on magnetic resonance imaging: a review J. Bernal Kaisar Kushibar Daniel S. Asfaw Sergi Valverde A. Oliver Robert Martí Xavier Llado 181 368 0 11 Dec 2017
Interactive Medical Image Segmentation using Deep Learning with Image-specific Fine-tuning Guotai Wang Wenqi Li Maria A. Zuluaga R. Pratt P. Patel ... T. Doel A. David Jan Deprest Sebastien Ourselin Tom Vercauteren 204 733 0 11 Oct 2017
NiftyNet: a deep-learning platform for medical imaging Eli Gibson Wenqi Li Carole Sudre Lucas Fidon D. I. Shakir ... Marc Modat D. Barratt Sébastien Ourselin M. Jorge Cardoso Tom Vercauteren 216 555 0 11 Sep 2017
Automatic Brain Tumor Segmentation using Cascaded Anisotropic Convolutional Neural Networks Guotai Wang Wenqi Li Sebastien Ourselin Tom Vercauteren 176 520 0 01 Sep 2017
Generalised Dice overlap as a deep learning loss function for highly unbalanced segmentations Carole H Sudre Wenqi Li Tom Vercauteren Sébastien Ourselin M. Jorge Cardoso SSeg 350 2,447 0 11 Jul 2017
DeepIGeoS: A Deep Interactive Geodesic Framework for Medical Image Segmentation Guotai Wang Maria A. Zuluaga Wenqi Li R. Pratt P. Patel ... T. Doel A. David Jan Deprest Sebastien Ourselin Tom Vercauteren 188 445 0 03 Jul 2017
Generalised Wasserstein Dice Score for Imbalanced Multi-class Segmentation using Holistic Convolutional Networks Lucas Fidon Wenqi Li Luis C. Garcia-Peraza-Herrera J. Ekanayake N. Kitchen Sebastien Ourselin Tom Vercauteren SSeg 291 160 0 03 Jul 2017
ToolNet: Holistically-Nested Real-Time Segmentation of Robotic Surgical Tools Luis C. Garcia-Peraza-Herrera Wenqi Li Lucas Fidon Caspar Gruijthuijsen A. Devreker ... Jan Deprest E. V. Poorten Danail Stoyanov Tom Vercauteren Sebastien Ourselin 159 141 0 25 Jun 2017
Scalable multimodal convolutional networks for brain tumour segmentation Lucas Fidon Wenqi Li Luis C. Garcia-Peraza-Herrera J. Ekanayake N. Kitchen Sebastien Ourselin Tom Vercauteren 149 64 0 25 Jun 2017