BEHRT: Transformer for Electronic Health Records

22 July 2019

Papers citing "BEHRT: Transformer for Electronic Health Records"

50 / 154 papers shown

Title
Hierarchical Pretraining on Multimodal Electronic Health Records Xiaochen Wang Junyu Luo Jiaqi Wang Ziyi Yin Suhan Cui Yuan Zhong Yaqing Wang Fenglong Ma 39 5 0 11 Oct 2023
Multi-domain improves out-of-distribution and data-limited scenarios for medical image analysis Ece Ozkan Xavier Boix OOD 28 0 0 10 Oct 2023
Deep Representation Learning for Prediction of Temporal Event Sets in the Continuous Time Domain Parag Dutta Kawin Mayilvaghanan Pratyaksha Sinha Ambedkar Dukkipati AI4TS 18 0 0 29 Sep 2023
CPLLM: Clinical Prediction with Large Language Models Ofir Ben Shoham Nadav Rappoport LM&MA 34 26 0 20 Sep 2023
UMLS-KGI-BERT: Data-Centric Knowledge Integration in Transformers for Biomedical Entity Recognition Aidan Mannion Thierry Chevalier D. Schwab Lorraine Goeuriot MedIm 51 3 0 20 Jul 2023
Interpreting deep embeddings for disease progression clustering Anna Munoz-Farre Antonios Poulakakis-Daktylidis Dilini M. Kothalawala A. Rodriguez-Martinez 33 0 0 12 Jul 2023
EHRSHOT: An EHR Benchmark for Few-Shot Evaluation of Foundation Models Michael Wornow Rahul Thapa E. Steinberg Jason Alan Fries N. Shah VLM OOD AI4MH 31 37 0 05 Jul 2023
Transformers in Healthcare: A Survey Subhash Nerella S. Bandyopadhyay Jiaqing Zhang Miguel Contreras Scott Siegel ... Jessica Sena B. Shickel A. Bihorac Kia Khezeli Parisa Rashidi MedIm AI4CE 23 25 0 30 Jun 2023
Natural Language Processing in Electronic Health Records in Relation to Healthcare Decision-making: A Systematic Review Elias Hossain R. Rana N. Higgins J. Soar P. Barua Anthony R. Pisani Ph. D K. Turner 34 182 0 22 Jun 2023
Event Stream GPT: A Data Pre-processing and Modeling Library for Generative, Pre-trained Transformers over Continuous-time Sequences of Complex Events Matthew B. A. McDermott Bret A. Nestor Peniel Argaw I. Kohane AI4TS 32 21 0 20 Jun 2023
ECGBERT: Understanding Hidden Language of ECGs with Self-Supervised Representation Learning Seokmin Choi Sajad Mousavi Phillip Si Haben Yhdego Fatemeh Khadem Fatemeh Afghah SSL 37 3 0 10 Jun 2023
A Comprehensive Survey on Generative Diffusion Models for Structured Data Heejoon Koo To Eun Kim DiffM MedIm 40 7 0 07 Jun 2023
Using Sequences of Life-events to Predict Human Lives Germans Savcisens Tina Eliassi-Rad L. K. Hansen L. Mortensen Lau Lilleholt Anna Rogers Ingo Zettler Sune Lehmann AI4TS 52 37 0 05 Jun 2023
A Transformer-based representation-learning model with unified processing of multimodal input for clinical diagnostics Hong-Yu Zhou Yizhou Yu Chengdi Wang Shu Zhen Zhang Yuanxu Gao Jia Pan Jun Shao Guangming Lu Kang Zhang Weimin Li MedIm 27 150 0 01 Jun 2023
Federated Learning of Medical Concepts Embedding using BEHRT Ofir Ben Shoham Nadav Rappoport FedML OOD 24 12 0 22 May 2023
LATTE: Label-efficient Incident Phenotyping from Longitudinal Electronic Health Records Jun Wen Jue Hou Clara-Lea Bonzel Yihan Zhao Victor Castro ... J. M. Gaziano K. Liao Junwei Lu Kelly Cho Tianxi Cai BDL 26 4 0 19 May 2023
Echoes of Biases: How Stigmatizing Language Affects AI Performance Yizhi Liu Weiguang Wang G. Gao Ritu Agarwal 23 2 0 17 May 2023
DuETT: Dual Event Time Transformer for Electronic Health Records Alex Labach Aslesha Pokhrel Xiao Shi Huang S. Zuberi S. Yi M. Volkovs T. Poutanen Rahul G. Krishnan AI4TS MedIm 28 3 0 25 Apr 2023
Toward Cohort Intelligence: A Universal Cohort Representation Learning Framework for Electronic Health Record Analysis Changshuo Liu Wenqiao Zhang Beng Chin Ooi J. Yip Lingze Zeng Kaiping Zheng 14 1 0 10 Apr 2023
Longitudinal Multimodal Transformer Integrating Imaging and Latent Clinical Signatures From Routine EHRs for Pulmonary Nodule Classification Thomas Z. Li J. M. Still Kaiwen Xu Ho Hin Lee L. Cai ... M. Kammer K. Sandler Fabien Maldonado Bennett A. Landman Thomas A. Lasko 24 7 0 06 Apr 2023
Application of Transformers based methods in Electronic Medical Records: A Systematic Literature Review Vitor A. Batista Alexandre Evsukoff MedIm 38 0 0 05 Apr 2023
Physics-Driven Diffusion Models for Impact Sound Synthesis from Videos Kun Su Kaizhi Qian Eli Shlizerman Antonio Torralba Chuang Gan VGen AI4CE 35 20 0 29 Mar 2023
ExBEHRT: Extended Transformer for Electronic Health Records to Predict Disease Subtypes & Progressions M. Rupp Oriane Peter T. Pattipaka 30 9 0 22 Mar 2023
Large AI Models in Health Informatics: Applications, Challenges, and the Future Jianing Qiu Lin Li Jiankai Sun Jiachuan Peng Peilun Shi ... Bo Xiao Wu Yuan Ningli Wang Dong Xu Benny Lo AI4MH LM&MA 42 128 0 21 Mar 2023
Hospitalization Length of Stay Prediction using Patient Event Sequences Emil Riis Hansen Thomas D. Nielsen Thomas Mulvad M. Stausholm Tomer Sagi Katja Hose AI4TS 11 0 0 20 Mar 2023
Rediscovery of CNN's Versatility for Text-based Encoding of Raw Electronic Health Records Eunbyeol Cho Min Jae Lee Kyunghoon Hur Jiyoun Kim Jinsung Yoon Edward Choi 24 0 0 15 Mar 2023
Synthesizing Mixed-type Electronic Health Records using Diffusion Models T. Ceritli Ghadeer O. Ghosheh V. Chauhan T. Zhu Andrew P. Creagh David Clifton MedIm DiffM 46 19 0 28 Feb 2023
Clinical Decision Transformer: Intended Treatment Recommendation through Goal Prompting Seunghyun Lee D. Lee Sujeong Im N. Kim Sung-Min Park 30 11 0 01 Feb 2023
Predicting Visit Cost of Obstructive Sleep Apnea using Electronic Healthcare Records with Transformer Zhaoyang Chen Lina Siltala-Li Mikko Lassila Pekka Malo Eeva Vilkkumaa T. Saaresranta A. Virkki 24 4 0 28 Jan 2023
Cross-lingual German Biomedical Information Extraction: from Zero-shot to Human-in-the-Loop Siting Liang Mareike Hartmann Daniel Sonntag 23 3 0 24 Jan 2023
MOTOR: A Time-To-Event Foundation Model For Structured Medical Records E. Steinberg Jason Alan Fries Yizhe Xu N. Shah OOD AI4TS 38 13 0 09 Jan 2023
Enhancing the prediction of disease outcomes using electronic health records and pretrained deep learning models Zhichao Yang Weisong Liu D. Berlowitz Hongfeng Yu AI4CE 17 0 0 22 Dec 2022
Foresight -- Generative Pretrained Transformer (GPT) for Modelling of Patient Timelines using EHRs Z. Kraljevic D. Bean Anthony Shek R. Bendayan H. Hemingway ... Alfie Baston Jack Ross Esther Idowu J. Teo Richard J. B. Dobson AI4TS 24 20 0 13 Dec 2022
sEHR-CE: Language modelling of structured EHR data for efficient and generalizable patient cohort expansion Anna Munoz-Farre Harry Rose S. A. Cakiroglu 11 4 0 30 Nov 2022
Semantic Decomposition Improves Learning of Large Language Models on EHR Data David A. Bloore R. Gauriau Anna Decker Jacob Oppenheim 29 1 0 14 Nov 2022
Dynamic Survival Transformers for Causal Inference with Electronic Health Records P. Chatha Yixin Wang Zhenke Wu Jeffrey Regier CML 36 1 0 25 Oct 2022
Knowledge-Driven New Drug Recommendation Zhenbang Wu Huaxiu Yao Zhe Su David M. Liebovitz Lucas Glass James Zou Chelsea Finn Jimeng Sun 28 4 0 11 Oct 2022
Analyzing historical diagnosis code data from NIH N3C and RECOVER Programs using deep learning to determine risk factors for Long Covid S. Sengupta Johanna J. Loomba Suchetha Sharma Donald E. Brown L. Thorpe M. Haendel C. Chute Stephanie S. Hong 21 6 0 05 Oct 2022
Modelling Patient Trajectories Using Multimodal Information J. F. Silva S. Matos 11 5 0 09 Sep 2022
Self-supervised Representation Learning on Electronic Health Records with Graph Kernel Infomax Hao-Ren Yao Nairen Cao Katina Russell D. Chang O. Frieder Jeremy T. Fineman SSL 25 1 0 01 Sep 2022
A Multimodal Transformer: Fusing Clinical Notes with Structured EHR Data for Interpretable In-Hospital Mortality Prediction Weimin Lyu Xinyu Dong Rachel Wong Songzhu Zheng Kayley Abell-Hart Fusheng Wang Chao Chen 26 47 0 09 Aug 2022
Cross-Lingual Knowledge Transfer for Clinical Phenotyping Jens-Michalis Papaioannou Paul Grundmann Betty van Aken A. Samaras Ilias Kyparissidis G. Giannakoulas Felix Alexander Gers Alexander Loser 42 6 0 03 Aug 2022
Unsupervised pre-training of graph transformers on patient population graphs Chantal Pellegrini Nassir Navab Anees Kazi MedIm AI4CE 46 11 0 21 Jul 2022
GenHPF: General Healthcare Predictive Framework with Multi-task Multi-source Learning Kyunghoon Hur Jungwoo Oh Junu Kim Jiyoun Kim Min Jae Lee Eunbyeol Choi Seong-Eun Moon Young-Hak Kim Louis Atallah Edward Choi AI4TS 22 22 0 20 Jul 2022
SYMBA: Symbolic Computation of Squared Amplitudes in High Energy Physics with Machine Learning Abdulhakim Alnuqaydan S. Gleyzer Harrison B. Prosper 28 14 0 17 Jun 2022
Multimodal Learning with Transformers: A Survey Peng Xu Xiatian Zhu David Clifton ViT 79 530 0 13 Jun 2022
On Efficient Approximate Queries over Machine Learning Models Dujian Ding S. Amer-Yahia L. Lakshmanan 27 5 0 06 Jun 2022
Recovering Private Text in Federated Learning of Language Models Samyak Gupta Yangsibo Huang Zexuan Zhong Tianyu Gao Kai Li Danqi Chen FedML 40 75 0 17 May 2022
CATNet: Cross-event Attention-based Time-aware Network for Medical Event Prediction Sicen Liu Xiaolong Wang Yang Xiang Huiqin Xu Hui Wang Buzhou Tang AI4TS 25 10 0 29 Apr 2022
An Extensive Data Processing Pipeline for MIMIC-IV Mehak Gupta Brennan M Gallamoza Nicolas Cutrona Pranjal Dhakal Raphael Poulain Rahmatollah Beheshti AI4TS 32 41 0 29 Apr 2022