BEHRT: Transformer for Electronic Health Records

22 July 2019

Papers citing "BEHRT: Transformer for Electronic Health Records"

50 / 154 papers shown

Title
Foundation models for electronic health records: representation dynamics and transferability Michael C. Burkhart Bashar Ramadan Zewei Liao Kaveri Chhikara Juan C. Rojas William F. Parker Brett Beaulieu-Jones 36 0 0 14 Apr 2025
MedRep: Medical Concept Representation for General Electronic Health Record Foundation Models Junmo Kim Namkyeong Lee Jiwon Kim Kwangsoo Kim 34 0 0 11 Apr 2025
ChronoFormer: Time-Aware Transformer Architectures for Structured Clinical Event Modeling Yuanyun Zhang Shi Li 39 0 0 10 Apr 2025
Comparing representations of long clinical texts for the task of patient note-identification Safa Alsaidi Marc Vincent O. Boyer Nicolas Garcelon Miguel Couceiro Adrien Coulet 57 0 0 31 Mar 2025
DynaGraph: Interpretable Multi-Label Prediction from EHRs via Dynamic Graph Learning and Contrastive Augmentation Munib Mesinovic Soheila Molaei Peter Watkinson Tingting Zhu AI4TS 38 0 0 28 Mar 2025
Improving Representation Learning of Complex Critical Care Data with ICU-BERT Ricardo Santos André V. Carreiro Xi Peng Hugo Gamboa Holger Fröhlich OOD 83 0 0 26 Feb 2025
A Collection of Innovations in Medical AI for patient records in 2024 Yuanyun Zhang Shi Li OOD 50 0 0 25 Feb 2025
Large Language Models are Powerful Electronic Health Record Encoders S. Hegselmann Georg von Arnim Tillmann Rheude Noel Kronenberg David Sontag Gerhard Hindricks R. Eils Benjamin Wild LM&MA 49 1 0 24 Feb 2025
Advancing Precision Oncology Through Modeling of Longitudinal and Multimodal Data Luoting Zhuang Stephen H. Park Steven J. Skates Ashley E. Prosper Denise R. Aberle William Hsu 119 0 0 11 Feb 2025
Foundation Model of Electronic Medical Records for Adaptive Risk Estimation P. Renc Michal K. Grzeszczyk Nassim Oufattole Deirdre Goode Y. Jia ... J. Was A. E. Samir Jonathan W. Cunningham D. W. Bates Arkadiusz Sitek 46 1 0 10 Feb 2025
A Survey of Large Language Models for Healthcare: from Data, Technology, and Applications to Accountability and Ethics Kai He Rui Mao Qika Lin Yucheng Ruan Xiang Lan Mengling Feng Min Zhang LM&MA AILaw 107 155 0 28 Jan 2025
Clinical Insights: A Comprehensive Review of Language Models in Medicine Nikita Neveditsin Pawan Lingras V. Mago LM&MA 60 4 0 08 Jan 2025
NoteContrast: Contrastive Language-Diagnostic Pretraining for Medical Text Prajwal Kailas Max Homilius Rahul C. Deo Calum A. MacRae 116 0 0 16 Dec 2024
Context Clues: Evaluating Long Context Models for Clinical Prediction Tasks on EHRs Michael Wornow Suhana Bedi Miguel Angel Fuentes Hernandez E. Steinberg Jason Alan Fries Christopher Ré Sanmi Koyejo N. Shah 100 4 0 09 Dec 2024
SynEHRgy: Synthesizing Mixed-Type Structured Electronic Health Records using Decoder-Only Transformers Hojjat Karami David Atienza Anisoara Ionescu 85 1 0 20 Nov 2024
Indication Finding: a novel use case for representation learning Maren Eckhoff Valmir Selimi Alexander Aranovitch Ian Lyons Emily Briggs Jennifer Hou Alex Devereson Matej Macak David Champagne Chris Anagnostopoulos 33 0 0 24 Oct 2024
Introducing the Large Medical Model: State of the art healthcare cost and risk prediction with transformers trained on patient event sequences Ricky Sahu Eric Marriott Ethan Siegel David Wagner Flore Uzan Troy Yang Asim Javed LM&MA AI4TS 31 0 0 19 Sep 2024
SynSUM -- Synthetic Benchmark with Structured and Unstructured Medical Records Paloma Rabaey Henri Arno Stefan Heytens Thomas Demeester 46 1 0 13 Sep 2024
Preserving Empirical Probabilities in BERT for Small-sample Clinical Entity Recognition Abdul Rehman Jiangning Zhang Xiaosong Yang 35 0 0 05 Sep 2024
Automatic Differential Diagnosis using Transformer-Based Multi-Label Sequence Classification Abu Adnan Sadi Mohammad Ashrafuzzaman Khan Lubaba Binte Saber 43 0 0 28 Aug 2024
MEDFuse: Multimodal EHR Data Fusion with Masked Lab-Test Modeling and Large Language Models T. M. Phan Cong-Tinh Dao Chenwei Wu Jian-Zhe Wang Shun Liu Jun-En Ding David Restrepo Feng Liu Fang-Ming Hung Wen-Chih Peng 31 1 0 17 Jul 2024
Static and multivariate-temporal attentive fusion transformer for readmission risk prediction Zhe Sun Runzhi Li Jing Wang Gang Chen Siyu Yan Lihong Ma 23 0 0 15 Jul 2024
A Comprehensive Survey of Scientific Large Language Models and Their Applications in Scientific Discovery Yu Zhang Xiusi Chen Bowen Jin Sheng Wang Shuiwang Ji Wei Wang Jiawei Han 49 29 0 16 Jun 2024
Inverse Probability of Treatment Weighting with Deep Sequence Models Enables Accurate treatment effect Estimation from Electronic Health Records Junghwan Lee Simin Ma N. Serban Shihao Yang CML 21 0 0 13 Jun 2024
From Basic to Extra Features: Hypergraph Transformer Pretrain-then-Finetuning for Balanced Clinical Predictions on EHR Ran Xu Yiwen Lu Chang Liu Yong Chen Yan Sun Xiao Hu Joyce C. Ho Carl Yang 51 1 0 09 Jun 2024
Behavior Structformer: Learning Players Representations with Structured Tokenization Oleg Smirnov Labinot Polisi 18 0 0 07 Jun 2024
Assessing the significance of longitudinal data in Alzheimer's Disease forecasting Batuhan K. Karaman M. Sabuncu 18 0 0 27 May 2024
EHRMamba: Towards Generalizable and Scalable Foundation Models for Electronic Health Records Adibvafa Fallahpour Mahshid Alinoori Arash Afkanpour Amrit Krishnan Mamba 27 2 0 23 May 2024
Towards Knowledge-Infused Automated Disease Diagnosis Assistant Mohit Tomar Abhisek Tiwari Sriparna Saha MedIm 26 3 0 18 May 2024
Retrieving and Refining: A Hybrid Framework with Large Language Models for Rare Disease Identification Jinge Wu Hang Dong Zexi Li Arijit Patra Honghan Wu 18 6 0 16 May 2024
Social Media Use is Predictable from App Sequences: Using LSTM and Transformer Neural Networks to Model Habitual Behavior Heinrich Peters Joseph B. Bayer S. C. Matz Yikun Chi S. Vaid Gabriella M. Harari 34 4 0 20 Apr 2024
Guided Discrete Diffusion for Electronic Health Record Generation Jun Han Zixiang Chen Yongqian Li Yiwen Kou Eran Halperin Robert E. Tillman Quanquan Gu MedIm DiffM 41 6 0 18 Apr 2024
Global Contrastive Training for Multimodal Electronic Health Records with Language Supervision Yingbo Ma Suraj Kolla Zhenhong Hu Dhruv Kaliraman Victoria Nolan ... Jeremy A. Balch Tyler J. Loftus Parisa Rashidi A. Bihorac B. Shickel AI4TS 33 1 0 10 Apr 2024
Foundation Model for Advancing Healthcare: Challenges, Opportunities, and Future Directions Yuting He Fuxiang Huang Xinrui Jiang Yuxiang Nie Minghao Wang Jiguang Wang Hao Chen LM&MA AI4CE 84 28 0 04 Apr 2024
Temporal Cross-Attention for Dynamic Embedding and Tokenization of Multimodal Electronic Health Records Yingbo Ma Suraj Kolla Dhruv Kaliraman Victoria Nolan Zhenhong Hu ... T. Ozrazgat-Baslanti Tyler J. Loftus Parisa Rashidi A. Bihorac B. Shickel AI4TS 34 1 0 06 Mar 2024
KG-TREAT: Pre-training for Treatment Effect Estimation by Synergizing Patient Data with Knowledge Graphs Ruoqi Liu Lingfei Wu Ping Zhang 23 1 0 06 Mar 2024
Large Language Models(LLMs) on Tabular Data: Prediction, Generation, and Understanding -- A Survey Xi Fang Weijie Xu Fiona Anting Tan Jiani Zhang Ziqing Hu Yanjun Qi Scott Nickleach Diego Socolinsky Srinivasan H. Sengamedu Christos Faloutsos LMTD ALM 54 66 0 27 Feb 2024
RAM-EHR: Retrieval Augmentation Meets Clinical Predictions on Electronic Health Records Ran Xu Wenqi Shi Yue Yu Yuchen Zhuang Bowen Jin M. D. Wang Joyce C. Ho Carl Yang 38 8 0 25 Feb 2024
A Masked language model for multi-source EHR trajectories contextual representation learning Ali Amirahmadi Mattias Ohlsson Kobra Etminani Olle Melander Jonas Björk MedIm 8 1 0 07 Feb 2024
CEHR-GPT: Generating Electronic Health Records with Chronological Patient Timelines Chao Pang Xinzhuo Jiang Nishanth P Pavinkurve Krishna S. Kalluri Elise Minto ... Linying Zhang G. Hripcsak Gamze Gürsoy Noémie Elhadad Karthik Natarajan 28 8 0 06 Feb 2024
Emergency Department Decision Support using Clinical Pseudo-notes Simon A. Lee Sujay Jain Alex Chen Kyoka Ono Jennifer Fang Á. Rudas Jeffrey N. Chiang 29 8 0 31 Jan 2024
Inadequacy of common stochastic neural networks for reliable clinical decision support Adrian Lindenmeyer Malte Blattmann S. Franke Thomas Neumuth Daniel Schneider BDL 37 1 0 24 Jan 2024
Representing Outcome-driven Higher-order Dependencies in Graphs of Disease Trajectories Steven J. Krieg Nitesh Chawla K. Feldman AI4CE 14 0 0 23 Dec 2023
Event-Based Contrastive Learning for Medical Time Series Hyewon Jeong Nassim Oufattole Matthew B. A. McDermott Aparna Balagopalan P. Chandak Marzyeh Ghassemi Collin M. Stultz 31 4 0 16 Dec 2023
Clinical Risk Prediction Using Language Models: Benefits And Considerations Angeela Acharya Sulabh Shrestha Anyi Chen Joseph Conte Sanja Avramovic S. Sikdar Antonios Anastasopoulos Sanmay Das 26 7 0 29 Nov 2023
A Multi-Center Study on the Adaptability of a Shared Foundation Model for Electronic Health Records L. Guo Jason Alan Fries E. Steinberg Scott L. Fleming Keith Morse Catherine Aftandilian J. Posada Nigam Shah L. Sung OOD 26 13 0 20 Nov 2023
INSPECT: A Multimodal Dataset for Pulmonary Embolism Diagnosis and Prognosis Shih-Cheng Huang Zepeng Huo E. Steinberg Chia-Chun Chiang M. Lungren Curtis P. Langlotz Serena Yeung Nigam H. Shah Jason Alan Fries LM&MA 27 9 0 17 Nov 2023
MuST: Multimodal Spatiotemporal Graph-Transformer for Hospital Readmission Prediction Yan Miao Lequan Yu 14 2 0 11 Nov 2023
Multimodal Clinical Benchmark for Emergency Care (MC-BEC): A Comprehensive Benchmark for Evaluating Foundation Models in Emergency Medicine Emma Chen Aman Kansal Julie Chen B. Jin Julia Rachel Reisler David A Kim Pranav Rajpurkar 43 14 0 07 Nov 2023
Detection and prediction of clopidogrel treatment failures using longitudinal structured electronic health records Samuel Kim Ingu Sean Lee Mijeong Irene Ban Jane Chiang 12 2 0 12 Oct 2023