v1v2v3 (latest)

Reconstructing continuous distributions of 3D protein structure from cryo-EM images

11 September 2019

Papers citing "Reconstructing continuous distributions of 3D protein structure from cryo-EM images"

50 / 53 papers shown

Title
I-INR: Iterative Implicit Neural Representations Ali Haider Muhammad Salman Ali Maryam Qamar Tahir Khalil Soo Ye Kim Jihyong Oh Enzo Tartaglione Sung-Ho Bae 75 0 0 24 Apr 2025
Explorable INR: An Implicit Neural Representation for Ensemble Simulation Enabling Efficient Spatial and Parameter Exploration Yi-Tang Chen Haoyu Li Neng Shi Xihaier Luo Wei Xu Han-Wei Shen 159 1 0 01 Apr 2025
CryoBench: Diverse and challenging datasets for the heterogeneity problem in cryo-EM Minkyu Jeon Rishwanth Raghu Miro A. Astore Geoffrey Woollard Ryan Feathers Alkin Kaz Sonya M. Hanson Pilar Cossio Ellen D. Zhong 94 10 0 17 Jan 2025
Mixture of neural fields for heterogeneous reconstruction in cryo-EM Axel Levy Rishwanth Raghu David Shustin Adele Rui-Yang Peng Huan Li Oliver Biggs Clarke Gordon Wetzstein Ellen D. Zhong 94 0 0 12 Dec 2024
3D Equivariant Pose Regression via Direct Wigner-D Harmonics Prediction Jongmin Lee Minsu Cho 90 1 0 01 Nov 2024
MING: A Functional Approach to Learning Molecular Generative Models Van Khoa Nguyen Maciej Falkiewicz Giangiacomo Mercatali Alexandros Kalousis DiffM AI4CE 64 0 0 16 Oct 2024
Frequency-adaptive Multi-scale Deep Neural Networks Jizu Huang Rukang You Tao Zhou AI4CE 95 2 0 28 Sep 2024
TorchSpatial: A Location Encoding Framework and Benchmark for Spatial Representation Learning Nemin Wu Qian Cao Zhangyu Wang Zeping Liu Yanlin Qi ... Stefano Ermon T. Ganu A. Nambi Ni Lao Gengchen Mai 221 20 0 21 Jun 2024
NeST: Neural Stress Tensor Tomography by leveraging 3D Photoelasticity Akshat Dave Tianyi Zhang Aaron Young Ramesh Raskar Wolfgang Heidrich Ashok Veeraraghavan 143 2 0 14 Jun 2024
Quantum Implicit Neural Representations Jiaming Zhao Wenbo Qiao Peng Zhang Hui Gao 74 4 0 06 Jun 2024
cryoSPHERE: Single-particle heterogeneous reconstruction from cryo EM Gabriel Ducrocq Lukas Grunewald S. Westenhoff Fredrik Lindsten 81 1 0 29 May 2024
An Overview of Diffusion Models: Applications, Guided Generation, Statistical Rates and Optimization Minshuo Chen Song Mei Jianqing Fan Mengdi Wang VLM MedIm DiffM 124 59 0 11 Apr 2024
MicroDiffusion: Implicit Representation-Guided Diffusion for 3D Reconstruction from Limited 2D Microscopy Projections Mude Hui Zihao Wei Hongru Zhu Fei Xia Yuyin Zhou MedIm 66 8 0 16 Mar 2024
Improved Implicit Neural Representation with Fourier Reparameterized Training Kexuan Shi Xingyu Zhou Shuhang Gu 148 21 0 15 Jan 2024
Equivariant Scalar Fields for Molecular Docking with Fast Fourier Transforms Bowen Jing Tommi Jaakkola Bonnie Berger 52 2 0 07 Dec 2023
Teaching Robots to Build Simulations of Themselves Yuhang Hu Jiong Lin Hod Lipson SSL 137 5 0 20 Nov 2023
Univariate Radial Basis Function Layers: Brain-inspired Deep Neural Layers for Low-Dimensional Inputs Daniel Jost Basavasagar Patil Xavier Alameda-Pineda Chris Reinke 23 0 0 07 Nov 2023
SSIF: Learning Continuous Image Representation for Spatial-Spectral Super-Resolution Gengchen Mai Ni Lao Weiwei Sun Yuchi Ma Jiaming Song Chenlin Meng Hongxu Ma Jinmeng Rao Ziyuan Li Stefano Ermon 71 4 0 30 Sep 2023
CoNeS: Conditional neural fields with shift modulation for multi-sequence MRI translation Yunjie Chen Marius Staring O. M. Neve Stephan R. Romeijn Erik F. Hensen Berit M. Verbist J. Wolterink Qian Tao DiffM MedIm 79 3 0 06 Sep 2023
ResFields: Residual Neural Fields for Spatiotemporal Signals Marko Mihajlovic Sergey Prokudin Marc Pollefeys Siyu Tang 102 18 0 06 Sep 2023
Robust Point Cloud Processing through Positional Embedding Jianqiao Zheng Xueqian Li Sameera Ramasinghe Simon Lucey 3DPC 88 5 0 01 Sep 2023
Recovering a Molecule's 3D Dynamics from Liquid-phase Electron Microscopy Movies E. Ye Yuhang Wang Hong Zhang Y. Gao Huan Wang H. Sun 72 2 0 23 Aug 2023
Improved Cryo-EM Pose Estimation and 3D Classification through Latent-Space Disentanglement Wei Chen Yuhang Wang Lin Yao DRL 31 1 0 09 Aug 2023
Equivariant Single View Pose Prediction Via Induced and Restricted Representations Owen Howell David Klee Ondrej Biza Linfeng Zhao Robin Walters 86 6 0 07 Jul 2023
Sphere2Vec: A General-Purpose Location Representation Learning over a Spherical Surface for Large-Scale Geospatial Predictions Gengchen Mai Yao Xuan Wen-Hang Zuo Yutong He Jiaming Song Stefano Ermon K. Janowicz Ni Lao 98 43 0 30 Jun 2023
CryoFormer: Continuous Heterogeneous Cryo-EM Reconstruction using Transformer-based Neural Representations Xinhang Liu Yan Zeng Yifan Qin Hao Li Jiakai Zhang Lan Xu Jingyi Yu ViT 55 2 0 28 Mar 2023
Implicit neural representations for unsupervised super-resolution and denoising of 4D flow MRI S. Saitta M. Carioni Subhadip Mukherjee Carola-Bibiane Schönlieb A. Redaelli 63 9 0 24 Feb 2023
Boosted ab initio Cryo-EM 3D Reconstruction with ACE-EM Lin Yao Ruihan Xu Zhifeng Gao Guolin Ke Yuhang Wang 44 2 0 13 Feb 2023
Latent Space Diffusion Models of Cryo-EM Structures Karsten Kreis Tim Dockhorn Zihao Li Ellen D. Zhong DiffM 64 16 0 25 Nov 2022
Generalizable Implicit Neural Representations via Instance Pattern Composers Chiheon Kim Doyup Lee Saehoon Kim Minsu Cho Wook-Shin Han AI4CE 86 25 0 23 Nov 2022
TINC: Tree-structured Implicit Neural Compression Runzhao Yang Tingxiong Xiao Yuxiao Cheng J. Suo Qionghai Dai 106 11 0 12 Nov 2022
Track Targets by Dense Spatio-Temporal Position Encoding Jinkun Cao Hao Wu Kris Kitani ViT 70 14 0 17 Oct 2022
Amortized Inference for Heterogeneous Reconstruction in Cryo-EM Axel Levy Gordon Wetzstein Julien N. P. Martel Frédéric Poitevin Ellen D. Zhong 70 38 0 13 Oct 2022
SCI: A Spectrum Concentrated Implicit Neural Compression for Biomedical Data Runzhao Yang Tingxiong Xiao Yuxiao Cheng Qi Cao Jinyuan Qu J. Suo Qionghai Dai 118 15 0 30 Sep 2022
Streamable Neural Fields Junwoo Cho Seungtae Nam Daniel Rho J. Ko Eunbyung Park AI4TS 70 17 0 20 Jul 2022
Theoretical Perspectives on Deep Learning Methods in Inverse Problems Jonathan Scarlett Reinhard Heckel M. Rodrigues Paul Hand Yonina C. Eldar AI4CE 110 32 0 29 Jun 2022
Trading Positional Complexity vs. Deepness in Coordinate Networks Jianqiao Zheng Sameera Ramasinghe Xueqian Li Simon Lucey 95 19 0 18 May 2022
CryoAI: Amortized Inference of Poses for Ab Initio Reconstruction of 3D Molecular Volumes from Real Cryo-EM Images Axel Levy Frédéric Poitevin Julien N. P. Martel Y. Nashed A. Peck Nina Miolane Daniel Ratner Mike Dunne Gordon Wetzstein 77 42 0 15 Mar 2022
PINs: Progressive Implicit Networks for Multi-Scale Neural Representations Zoe Landgraf A. Sorkine-Hornung R. Cabral 63 16 0 09 Feb 2022
Sphere2Vec: Multi-Scale Representation Learning over a Spherical Surface for Geospatial Predictions Gengchen Mai Yao Xuan Wenyun Zuo K. Janowicz Ni Lao 32 4 0 25 Jan 2022
Learning Positional Embeddings for Coordinate-MLPs Sameera Ramasinghe Simon Lucey 86 10 0 21 Dec 2021
Neural Fields in Visual Computing and Beyond Yiheng Xie Towaki Takikawa Shunsuke Saito Or Litany Shiqin Yan Numair Khan Federico Tombari James Tompkin Vincent Sitzmann Srinath Sridhar 3DH 228 634 0 22 Nov 2021
A Review of Location Encoding for GeoAI: Methods and Applications Gengchen Mai K. Janowicz Yingjie Hu Song Gao Bo Yan Rui Zhu Ling Cai Ni Lao 137 120 0 07 Nov 2021
3D Infomax improves GNNs for Molecular Property Prediction Hannes Stärk Dominique Beaini Gabriele Corso Prudencio Tossou Christian Dallago Stephan Günnemann Pietro Lio AI4CE 110 208 0 08 Oct 2021
Rethinking Positional Encoding Jianqiao Zheng Sameera Ramasinghe Simon Lucey 81 52 0 06 Jul 2021
Spline Positional Encoding for Learning 3D Implicit Signed Distance Fields Peng-Shuai Wang Yang Liu Yu-Qi Yang Xin Tong 3DPC 123 29 0 03 Jun 2021
FastNeRF: High-Fidelity Neural Rendering at 200FPS Stephan J. Garbin Marek Kowalski Matthew W. Johnson Jamie Shotton Julien P. C. Valentin 116 648 0 18 Mar 2021
Reproducing Activation Function for Deep Learning Senwei Liang Liyao Lyu Chunmei Wang Haizhao Yang 73 23 0 13 Jan 2021
Wasserstein K-Means for Clustering Tomographic Projections R. Rao Amit Moscovich A. Singer 62 12 0 20 Oct 2020
Product Manifold Learning Sharon Zhang Amit Moscovich A. Singer 85 14 0 19 Oct 2020