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Explainable Automated Coding of Clinical Notes using Hierarchical
  Label-wise Attention Networks and Label Embedding Initialisation
v1v2v3v4 (latest)

Explainable Automated Coding of Clinical Notes using Hierarchical Label-wise Attention Networks and Label Embedding Initialisation

Journal of Biomedical Informatics (JBI), 2020
29 October 2020
Hang Dong
Víctor Suárez-Paniagua
W. Whiteley
Honghan Wu
ArXiv (abs)PDFHTML

Papers citing "Explainable Automated Coding of Clinical Notes using Hierarchical Label-wise Attention Networks and Label Embedding Initialisation"

35 / 35 papers shown
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Tongliang Liu
Long Duong
Yuan-Fang Li
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116
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17 Nov 2025
Model selection meets clinical semantics: Optimizing ICD-10-CM prediction via LLM-as-Judge evaluation, redundancy-aware sampling, and section-aware fine-tuning
Model selection meets clinical semantics: Optimizing ICD-10-CM prediction via LLM-as-Judge evaluation, redundancy-aware sampling, and section-aware fine-tuning
Hong-Jie Dai
Zheng-Hao Li
An-Tai Lu
Bo-Tsz Shain
Ming-Ta Li
Tatheer Hussain Mir
Kuang-Te Wang
Min-I Su
Pei-Kang Liu
Ming-Ju Tsai
145
0
0
23 Sep 2025
Code Like Humans: A Multi-Agent Solution for Medical Coding
Code Like Humans: A Multi-Agent Solution for Medical Coding
Andreas Geert Motzfeldt
Joakim Edin
Casper L. Christensen
Christian Hardmeier
Lars Maaløe
Anna Rogers
229
0
0
04 Sep 2025
Structured Information Matters: Explainable ICD Coding with Patient-Level Knowledge Graphs
Structured Information Matters: Explainable ICD Coding with Patient-Level Knowledge Graphs
Mingyang Li
Viktor Schlegel
Tingting Mu
Warren Del-Pinto
Goran Nenadic
116
0
0
04 Sep 2025
Evaluation and LLM-Guided Learning of ICD Coding Rationales
Evaluation and LLM-Guided Learning of ICD Coding Rationales
Mingyang Li
Viktor Schlegel
Tingting Mu
Wuraola Oyewusi
Kai Kang
Goran Nenadic
88
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0
22 Aug 2025
Infusing clinical knowledge into tokenisers for language models
Infusing clinical knowledge into tokenisers for language models
Abul Hasan
Jinge Wu
Quang Ngoc Nguyen
Salomé Andres
Imane Guellil
Huayu Zhang
Arlene Casey
Beatrice Alex
Bruce Guthrie
Honghan Wu
186
3
0
20 Jun 2024
An Unsupervised Approach to Achieve Supervised-Level Explainability in
  Healthcare Records
An Unsupervised Approach to Achieve Supervised-Level Explainability in Healthcare Records
Joakim Edin
Maria Maistro
Lars Maaløe
Lasse Borgholt
Jakob Drachmann Havtorn
Tuukka Ruotsalo
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213
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13 Jun 2024
From Explainable to Interpretable Deep Learning for Natural Language
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Guangming Huang
Yingya Li
Shoaib Jameel
Yunfei Long
G. Papanastasiou
303
37
0
18 Mar 2024
CoRelation: Boosting Automatic ICD Coding Through Contextualized Code
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CoRelation: Boosting Automatic ICD Coding Through Contextualized Code Relation Learning
Junyu Luo
Xiaochen Wang
Yuan Liu
Aofei Chang
Yaqing Wang
Fenglong Ma
246
15
0
24 Feb 2024
Can GPT-3.5 Generate and Code Discharge Summaries?
Can GPT-3.5 Generate and Code Discharge Summaries?
Matúvs Falis
Aryo Pradipta Gema
Hang Dong
Luke Daines
Siddharth Basetti
Michael Holder
Rose S Penfold
Alexandra Birch
Beatrice Alex
MedIm
353
28
0
24 Jan 2024
Automated Clinical Coding for Outpatient Departments
Automated Clinical Coding for Outpatient Departments
Viktor Schlegel
Abhinav Ramesh Kashyap
Thanh-Tung Nguyen
Tsung-Han Yang
Vijay Prakash Dwivedi
Wei-Hsian Yin
Jeng Wei
Stefan Winkle
292
2
0
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SLJP: Semantic Extraction based Legal Judgment Prediction
SLJP: Semantic Extraction based Legal Judgment Prediction
Prameela Madambakam
Shathanaa Rajmohan
Himangshu Sharma
Tummepalli Anka Chandrahas Purushotham Gupta
ELMAILaw
158
1
0
13 Dec 2023
Surpassing GPT-4 Medical Coding with a Two-Stage Approach
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Zhichao Yang
S. S. Batra
Joel Stremmel
Eran Halperin
ELM
277
11
0
22 Nov 2023
Exploring the Consistency, Quality and Challenges in Manual and
  Automated Coding of Free-text Diagnoses from Hospital Outpatient Letters
Exploring the Consistency, Quality and Challenges in Manual and Automated Coding of Free-text Diagnoses from Hospital Outpatient Letters
Warren Del-Pinto
G. Demetriou
M. Jani
Rikesh Patel
Leanne Gray
Alexander Bulcock
Niels Peek
A. Kanter
William G Dixon
Goran Nenadic
140
1
0
17 Nov 2023
Explainable AI for clinical risk prediction: a survey of concepts,
  methods, and modalities
Explainable AI for clinical risk prediction: a survey of concepts, methods, and modalities
Munib Mesinovic
Peter Watkinson
Ting Zhu
FaML
207
7
0
16 Aug 2023
Automated Medical Coding on MIMIC-III and MIMIC-IV: A Critical Review
  and Replicability Study
Automated Medical Coding on MIMIC-III and MIMIC-IV: A Critical Review and Replicability StudyAnnual International ACM SIGIR Conference on Research and Development in Information Retrieval (SIGIR), 2023
Joakim Edin
Alexander Junge
Jakob Drachmann Havtorn
Lasse Borgholt
Maria Maistro
Tuukka Ruotsalo
Lars Maaløe
199
66
0
21 Apr 2023
Automated ICD Coding using Extreme Multi-label Long Text
  Transformer-based Models
Automated ICD Coding using Extreme Multi-label Long Text Transformer-based Models
Leibo Liu
O. Perez-Concha
Anthony N. Nguyen
Vicki Bennett
Louisa R Jorm
186
24
0
12 Dec 2022
An Automatic ICD Coding Network Using Partition-Based Label Attention
An Automatic ICD Coding Network Using Partition-Based Label Attention
Daeseong Kim
Haanju Yoo
Sewon Kim
160
6
0
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This Patient Looks Like That Patient: Prototypical Networks for
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This Patient Looks Like That Patient: Prototypical Networks for Interpretable Diagnosis Prediction from Clinical Text
Betty van Aken
Jens-Michalis Papaioannou
M. Naik
G. Eleftheriadis
Wolfgang Nejdl
Felix Alexander Gers
Alexander Loser
264
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16 Oct 2022
Knowledge Injected Prompt Based Fine-tuning for Multi-label Few-shot ICD
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Knowledge Injected Prompt Based Fine-tuning for Multi-label Few-shot ICD CodingConference on Empirical Methods in Natural Language Processing (EMNLP), 2022
Zhichao Yang
Shufan Wang
Bhanu Pratap Singh Rawat
Avijit Mitra
Hong-ye Yu
291
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0
07 Oct 2022
Entity Anchored ICD Coding
Entity Anchored ICD CodingAmerican Medical Informatics Association Annual Symposium (AMIA), 2022
Jay DeYoung
Han-Chin Shing
Luyang Kong
C. Winestock
Chaitanya P. Shivade
172
6
0
15 Aug 2022
Ontology-Driven and Weakly Supervised Rare Disease Identification from
  Clinical Notes
Ontology-Driven and Weakly Supervised Rare Disease Identification from Clinical NotesBMC Medical Informatics and Decision Making (BMC Med Inform Decis Mak), 2022
Hang Dong
Víctor Suárez-Paniagua
Huayu Zhang
Minhong Wang
Arlene Casey
E. Davidson
Jiaoyan Chen
Beatrice Alex
W. Whiteley
Honghan Wu
312
23
0
11 May 2022
Hierarchical Label-wise Attention Transformer Model for Explainable ICD
  Coding
Hierarchical Label-wise Attention Transformer Model for Explainable ICD CodingJournal of Biomedical Informatics (JBI), 2022
Leibo Liu
Óscar Pérez
Anthony N. Nguyen
Vicki Bennett
Louisa R Jorm
220
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0
22 Apr 2022
Multi-label classification for biomedical literature: an overview of the
  BioCreative VII LitCovid Track for COVID-19 literature topic annotations
Multi-label classification for biomedical literature: an overview of the BioCreative VII LitCovid Track for COVID-19 literature topic annotations
Qingyu Chen
Alexis Allot
Robert Leaman
Rezarta Islamaj Dougan
Jingcheng Du
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S. Pujari
Mariia Chizhikova
Naveen Sivadasan
Naveen Sivadasan
Zhiyong Lu
183
38
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20 Apr 2022
Revisiting Transformer-based Models for Long Document Classification
Revisiting Transformer-based Models for Long Document ClassificationConference on Empirical Methods in Natural Language Processing (EMNLP), 2022
Xiang Dai
Ilias Chalkidis
Kenny Erleben
Desmond Elliott
VLM
229
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0
14 Apr 2022
Are We Really Making Much Progress in Text Classification? A Comparative
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Are We Really Making Much Progress in Text Classification? A Comparative Review
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Andor Diera
Bao Xin Lin
Bhakti Khera
Tim Meuser
Tushar Singhal
Fabian Karl
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366
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08 Apr 2022
Automated Clinical Coding: What, Why, and Where We Are?
Automated Clinical Coding: What, Why, and Where We Are?npj Digital Medicine (NDM), 2022
Hang Dong
Matús Falis
W. Whiteley
Beatrice Alex
Joshua Matterson
Shaoxiong Ji
Jiaoyan Chen
Honghan Wu
221
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21 Mar 2022
A Unified Review of Deep Learning for Automated Medical Coding
A Unified Review of Deep Learning for Automated Medical CodingACM Computing Surveys (ACM CSUR), 2022
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Wei Sun
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Ara Taalas
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487
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Explainable Artificial Intelligence Methods in Combating Pandemics: A
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Explainable Artificial Intelligence Methods in Combating Pandemics: A Systematic ReviewIEEE Reviews in Biomedical Engineering (IEEE Rev. Biomed. Eng.), 2021
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Wenqi Shi
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CoPHE: A Count-Preserving Hierarchical Evaluation Metric in Large-Scale
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CoPHE: A Count-Preserving Hierarchical Evaluation Metric in Large-Scale Multi-Label Text ClassificationConference on Empirical Methods in Natural Language Processing (EMNLP), 2021
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128
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Parameter Selection: Why We Should Pay More Attention to It
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Rare Disease Identification from Clinical Notes with Ontologies and Weak
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Rare Disease Identification from Clinical Notes with Ontologies and Weak SupervisionAnnual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 2021
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Does the Magic of BERT Apply to Medical Code Assignment? A Quantitative
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A Systematic Review of Natural Language Processing Applied to Radiology
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Beatrice Alex
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