Communities
Connect sessions
AI calendar
Organizations
Join Slack
Contact Sales
Search
Open menu
Home
Papers
2011.02947
Cited By
v1
v2
v3 (latest)
CODER: Knowledge infused cross-lingual medical term embedding for term normalization
5 November 2020
Zheng Yuan
Zhengyun Zhao
Haixia Sun
Jiao Li
Fei Wang
Sheng Yu
MedIm
Re-assign community
ArXiv (abs)
PDF
HTML
Github (78★)
Papers citing
"CODER: Knowledge infused cross-lingual medical term embedding for term normalization"
46 / 46 papers shown
KEEP: Integrating Medical Ontologies with Clinical Data for Robust Code Embeddings
ACM Conference on Health, Inference, and Learning (CHIL), 2025
Ahmed Elhussein
Paul Meddeb
Abigail Newbury
Jeanne Mirone
Martin Stoll
Gamze Gürsoy
CLL
176
1
0
06 Oct 2025
A Common Pipeline for Harmonizing Electronic Health Record Data for Translational Research
Jessica L. Gronsbell
V. A. Panickan
Chris Lin
Thomas Charlon
Chuan Hong
...
Yuan Tian
Yaqi Shi
Ziming Gan
T. Cai
T. Cai
206
0
0
10 Sep 2025
BALI: Enhancing Biomedical Language Representations through Knowledge Graph and Language Model Alignment
Annual International ACM SIGIR Conference on Research and Development in Information Retrieval (SIGIR), 2025
Andrey Sakhovskiy
E. Tutubalina
208
3
0
09 Sep 2025
Automated Hierarchical Graph Construction for Multi-source Electronic Health Records
Y Samuel Wang
Doudou Zhou
Yue Liu
Junwei Lu
T. Cai
291
0
0
08 Sep 2025
DermINO: Hybrid Pretraining for a Versatile Dermatology Foundation Model
Jingkai Xu
De Cheng
Xiangqian Zhao
Jungang Yang
Zilong Wang
...
Jianming Liang
Lili Qiu
Nannan Wang
Xianbo Zuo
Cui Yong
MedIm
284
3
0
17 Aug 2025
Automated SNOMED CT Concept Annotation in Clinical Text Using Bi-GRU Neural Networks
Ali Noori
Pratik Devkota
Somya Mohanty
Prashanti Manda
76
1
0
04 Aug 2025
DR.EHR: Dense Retrieval for Electronic Health Record with Knowledge Injection and Synthetic Data
Zhengyun Zhao
Huaiyuan Ying
Yue Zhong
S. Yu
210
0
0
24 Jul 2025
A Weakly Supervised Transformer for Rare Disease Diagnosis and Subphenotyping from EHRs with Pulmonary Case Studies
Kimberly F. Greco
Zongxin Yang
Mengyan Li
Han Tong
Sara Morini Sweet
Alon Geva
Kenneth Mandl
Benjamin A. Raby
Tianxi Cai
179
0
0
01 Jul 2025
Intercept Cancer: Cancer Pre-Screening with Large Scale Healthcare Foundation Models
Liwen Sun
Hao-Ren Yao
Gary Gao
O. Frieder
Chenyan Xiong
227
1
0
30 May 2025
Semi-supervised Clustering Through Representation Learning of Large-scale EHR Data
Linshanshan Wang
Mengyan Li
Zongqi Xia
Molei Liu
Tianxi Cai
334
1
0
27 May 2025
RuCCoD: Towards Automated ICD Coding in Russian
A. Nesterov
Andrey Sakhovskiy
Ivan Sviridov
Airat Valiev
Vladimir Makharev
Petr Anokhin
Galina Zubkova
E. Tutubalina
455
2
0
28 Feb 2025
A Survey of Large Language Models for Healthcare: from Data, Technology, and Applications to Accountability and Ethics
Information Fusion (Inf. Fusion), 2023
Kai He
Rui Mao
Qika Lin
Yucheng Ruan
Xiang Lan
Mengling Feng
Xiaoshi Zhong
LM&MA
AILaw
894
298
0
28 Jan 2025
Unified Representation of Genomic and Biomedical Concepts through Multi-Task, Multi-Source Contrastive Learning
Hongyi Yuan
Suqi Liu
Kelly Cho
Katherine P. Liao
Alexandre Pereira
T. Cai
MedIm
217
0
0
14 Oct 2024
Disease Entity Recognition and Normalization is Improved with Large Language Model Derived Synthetic Normalized Mentions
Kuleen Sasse
Shinjitha Vadlakonda
Richard Kennedy
J. D. Osborne
AI4CE
242
2
0
10 Oct 2024
A Comprehensive Survey of Scientific Large Language Models and Their Applications in Scientific Discovery
Yu Zhang
Xiusi Chen
Sara Szymkuć
Sheng Wang
Shuiwang Ji
Wei Wang
Jiawei Han
489
106
0
16 Jun 2024
Towards Knowledge-Infused Automated Disease Diagnosis Assistant
Scientific Reports (Sci Rep), 2024
Mohit Tomar
Abhisek Tiwari
Sriparna Saha
MedIm
267
4
0
18 May 2024
CoRTEx: Contrastive Learning for Representing Terms via Explanations with Applications on Constructing Biomedical Knowledge Graphs
Huaiyuan Ying
Zhengyun Zhao
Yang Zhao
Sihang Zeng
Sheng Yu
252
7
0
13 Dec 2023
Solving the Right Problem is Key for Translational NLP: A Case Study in UMLS Vocabulary Insertion
Conference on Empirical Methods in Natural Language Processing (EMNLP), 2023
Bernal Jimenez Gutierrez
Yuqing Mao
Vinh Nguyen
K. Fung
Yu Su
O. Bodenreider
171
0
0
25 Nov 2023
xMEN: A Modular Toolkit for Cross-Lingual Medical Entity Normalization
JAMIA Open (JAMIA Open), 2023
Florian Borchert
Ignacio Llorca
Roland Roller
Bert Arnrich
M. Schapranow
177
9
0
17 Oct 2023
Boosting Adverse Drug Event Normalization on Social Media: General-Purpose Model Initialization and Biomedical Semantic Text Similarity Benefit Zero-Shot Linking in Informal Contexts
International Workshop on Natural Language Processing for Social Media (SocialNLP), 2023
François Remy
Simone Scaboro
Beatrice Portelli
MedIm
186
4
0
31 Jul 2023
UMLS-KGI-BERT: Data-Centric Knowledge Integration in Transformers for Biomedical Entity Recognition
Clinical Natural Language Processing Workshop (ClinicalNLP), 2023
Aidan Mannion
Thierry Chevalier
D. Schwab
Lorraine Goeuriot
MedIm
417
6
0
20 Jul 2023
Hierarchical Pretraining for Biomedical Term Embeddings
Bryan Cai
Sihang Zeng
Yucong Lin
Zheng Yuan
D. Zhou
Lu Tian
307
0
0
01 Jul 2023
Impact of translation on biomedical information extraction from real-life clinical notes
C. Gérardin
Yu Xiong
Perceval Wajsburt
F. Carrat
X. Tannier
238
2
0
03 Jun 2023
LATTE: Label-efficient Incident Phenotyping from Longitudinal Electronic Health Records
Jun Wen
Jue Hou
Clara-Lea Bonzel
Yihan Zhao
Victor Castro
...
J. M. Gaziano
K. Liao
Junwei Lu
Kelly Cho
Tianxi Cai
BDL
199
6
0
19 May 2023
Detecting Idiomatic Multiword Expressions in Clinical Terminology using Definition-Based Representation Learning
Workshop on Multiword Expressions (MWE), 2023
François Remy
A. Khabibullina
Thomas Demeester
319
0
0
11 May 2023
Exploring Partial Knowledge Base Inference in Biomedical Entity Linking
Workshop on Biomedical Natural Language Processing (BioNLP), 2023
Hongyi Yuan
Keming Lu
Zheng Yuan
206
4
0
18 Mar 2023
Combining Contrastive Learning and Knowledge Graph Embeddings to develop medical word embeddings for the Italian language
International Conference of the Italian Association for Artificial Intelligence (AIxIA), 2022
Denys Amore Bondarenko
Roger Ferrod
Luigi Di Caro
269
1
0
09 Nov 2022
Generalizing over Long Tail Concepts for Medical Term Normalization
Conference on Empirical Methods in Natural Language Processing (EMNLP), 2022
Beatrice Portelli
Simone Scaboro
Enrico Santus
Hooman Sedghamiz
Emmanuele Chersoni
Giuseppe Serra
MedIm
258
10
0
21 Oct 2022
Review of Natural Language Processing in Pharmacology
Pharmacological Reviews (Pharmacol Rev), 2022
D. Trajanov
Vangel Trajkovski
Makedonka Dimitrieva
Jovana Dobreva
Milos Jovanovik
Matej Klemen
Alevs vZagar
Marko Robnik-vSikonja
LM&MA
354
15
0
22 Aug 2022
Generative Biomedical Entity Linking via Knowledge Base-Guided Pre-training and Synonyms-Aware Fine-tuning
North American Chapter of the Association for Computational Linguistics (NAACL), 2022
Hongyi Yuan
Zheng Yuan
Sheng Yu
MedIm
321
60
0
11 Apr 2022
BioBART: Pretraining and Evaluation of A Biomedical Generative Language Model
Workshop on Biomedical Natural Language Processing (BioNLP), 2022
Hongyi Yuan
Zheng Yuan
Ruyi Gan
Jiaxing Zhang
Yutao Xie
Sheng Yu
LM&MA
374
169
0
08 Apr 2022
Automatic Biomedical Term Clustering by Learning Fine-grained Term Representations
Workshop on Biomedical Natural Language Processing (BioNLP), 2022
Sihang Zeng
Zheng Yuan
Sheng Yu
209
8
0
01 Apr 2022
BIOS: An Algorithmically Generated Biomedical Knowledge Graph
Sheng Yu
Zheng Yuan
Jun Xia
Shengxuan Luo
Huaiyuan Ying
...
Yucong Lin
Keming Lu
Jing Wang
Yutao Xie
H. Shum
260
24
0
18 Mar 2022
Semi-constraint Optimal Transport for Entity Alignment with Dangling Cases
Shengxuan Luo
Peng Cheng
Shengkang Yu
383
6
0
11 Mar 2022
An Accurate Unsupervised Method for Joint Entity Alignment and Dangling Entity Detection
Findings (Findings), 2022
Shengxuan Luo
Shengkang Yu
134
20
0
10 Mar 2022
Code Synonyms Do Matter: Multiple Synonyms Matching Network for Automatic ICD Coding
Annual Meeting of the Association for Computational Linguistics (ACL), 2022
Zheng Yuan
Chuanqi Tan
Songfang Huang
OffRL
280
101
0
03 Mar 2022
Rewire-then-Probe: A Contrastive Recipe for Probing Biomedical Knowledge of Pre-trained Language Models
Zaiqiao Meng
Fangyu Liu
Ehsan Shareghi
Yixuan Su
Charlotte Collins
Nigel Collier
287
35
0
15 Oct 2021
Pre-trained Language Models in Biomedical Domain: A Systematic Survey
ACM Computing Surveys (CSUR), 2021
Benyou Wang
Qianqian Xie
Jiahuan Pei
Zhihong Chen
Prayag Tiwari
Zhao Li
Jie Fu
LM&MA
AI4CE
547
225
0
11 Oct 2021
Coreference Resolution for the Biomedical Domain: A Survey
Pengcheng Lu
Massimo Poesio
269
17
0
25 Sep 2021
AMMUS : A Survey of Transformer-based Pretrained Models in Natural Language Processing
Katikapalli Subramanyam Kalyan
A. Rajasekharan
S. Sangeetha
VLM
LM&MA
423
321
0
12 Aug 2021
Multi-source Learning via Completion of Block-wise Overlapping Noisy Matrices
Journal of machine learning research (JMLR), 2021
D. Zhou
Tianxi Cai
Junwei Lu
381
19
0
21 May 2021
Improving Biomedical Pretrained Language Models with Knowledge
Workshop on Biomedical Natural Language Processing (BioNLP), 2021
Zheng Yuan
Yijia Liu
Chuanqi Tan
Songfang Huang
Fei Huang
233
101
0
21 Apr 2021
AMMU : A Survey of Transformer-based Biomedical Pretrained Language Models
Journal of Biomedical Informatics (JBI), 2021
Katikapalli Subramanyam Kalyan
A. Rajasekharan
S. Sangeetha
LM&MA
MedIm
467
200
0
16 Apr 2021
Biomedical Question Answering: A Survey of Approaches and Challenges
ACM Computing Surveys (CSUR), 2021
Qiao Jin
Zheng Yuan
Guangzhi Xiong
Qian Yu
Huaiyuan Ying
Chuanqi Tan
Mosha Chen
Songfang Huang
Xiaozhong Liu
Sheng Yu
379
128
0
10 Feb 2021
A Hybrid Approach to Measure Semantic Relatedness in Biomedical Concepts
Katikapalli Subramanyam Kalyan
S. Sangeetha
233
9
0
25 Jan 2021
Unsupervised Learning of Visual Features by Contrasting Cluster Assignments
Mathilde Caron
Ishan Misra
Julien Mairal
Priya Goyal
Piotr Bojanowski
Armand Joulin
OCL
SSL
1.5K
4,857
0
17 Jun 2020
1
Page 1 of 1