Quantifying Explainers of Graph Neural Networks in Computational Pathology

25 November 2020

Guillaume Jaume

Pushpak Pati

Behzad Bozorgtabar

Antonio Foncubierta-Rodríguez

Jean-Philippe Thiran

Papers citing "Quantifying Explainers of Graph Neural Networks in Computational Pathology"

36 / 36 papers shown

Title
GECKO: Gigapixel Vision-Concept Contrastive Pretraining in Histopathology S. Kapse Pushpak Pati Srikar Yellapragada Srijan Das Rajarsi R. Gupta Joel H. Saltz Dimitris Samaras Prateek Prasanna VLM 46 0 0 01 Apr 2025
Explainable Classifier for Malignant Lymphoma Subtyping via Cell Graph and Image Fusion Daiki Nishiyama H. Miyoshi Noriaki Hashimoto K. Ohshima H. Hontani I. Takeuchi Jun Sakuma 39 0 0 02 Mar 2025
A Survey on Cell Nuclei Instance Segmentation and Classification: Leveraging Context and Attention João D. Nunes D. Montezuma Domingos Oliveira Tania Pereira Jaime S. Cardoso 49 1 0 26 Jul 2024
Generative Modelling of Structurally Constrained Graphs Manuel Madeira Clément Vignac D. Thanou Pascal Frossard DiffM 51 0 0 25 Jun 2024
SI-MIL: Taming Deep MIL for Self-Interpretability in Gigapixel Histopathology S. Kapse Pushpak Pati Srijan Das Jingwei Zhang Chao Chen Maria Vakalopoulou Joel H. Saltz Dimitris Samaras Rajarsi R. Gupta Prateek Prasanna 23 10 0 22 Dec 2023
Artificial Intelligence for Digital and Computational Pathology Andrew H. Song Guillaume Jaume Drew F. K. Williamson Ming Y. Lu Anurag J. Vaidya Tiffany R. Miller Faisal Mahmood AI4CE 30 129 0 13 Dec 2023
Interpretable Prototype-based Graph Information Bottleneck Sangwoo Seo Sungwon Kim Chanyoung Park 13 12 0 30 Oct 2023
Tertiary Lymphoid Structures Generation through Graph-based Diffusion Manuel Madeira D. Thanou Pascal Frossard MedIm 25 1 0 10 Oct 2023
Whole Slide Multiple Instance Learning for Predicting Axillary Lymph Node Metastasis Glejdis Shkëmbi Johanna P. Müller Zhe Li Katharina Breininger Peter J. Schüffler Bernhard Kainz 11 1 0 06 Oct 2023
A General-Purpose Self-Supervised Model for Computational Pathology Richard J. Chen Tong Ding Ming Y. Lu Drew F. K. Williamson Guillaume Jaume ... Judy J. Wang Walt Williams L. Le Georg Gerber Faisal Mahmood MedIm 20 42 0 29 Aug 2023
Asymmetric Co-Training with Explainable Cell Graph Ensembling for Histopathological Image Classification Ziqi Yang Zhongyu Li Chen Liu Xiangde Luo Xingguang Wang Dou Xu Chao-Ting Li Xiaoying Qin Meng Yang Long Jin 32 0 0 24 Aug 2023
Explainable and Position-Aware Learning in Digital Pathology Milan Aryal Nasim Yahyasoltani MedIm 19 0 0 14 Jun 2023
A Survey on Explainability of Graph Neural Networks Jaykumar Kakkad Jaspal Jannu Kartik Sharma Charu C. Aggarwal Sourav Medya 28 23 0 02 Jun 2023
Unsupervised Mutual Transformer Learning for Multi-Gigapixel Whole Slide Image Classification S. Javed Arif Mahmood Talha Qaiser J. Bingler Markus Leippold ViT MedIm 24 6 0 03 May 2023
KS-GNNExplainer: Global Model Interpretation Through Instance Explanations On Histopathology images Sina Abdous R. Abdollahzadeh M. Rohban 51 1 0 14 Apr 2023
GNNFormer: A Graph-based Framework for Cytopathology Report Generation Yangqiaoyu Zhou Kai-Lang Yao Wusuo Li MedIm 13 1 0 17 Mar 2023
Structure Embedded Nucleus Classification for Histopathology Images Wei Lou Xiang Wan Guanbin Li X. Lou Chenghang Li Feng Gao Haofeng Li 16 9 0 22 Feb 2023
Weakly Supervised Joint Whole-Slide Segmentation and Classification in Prostate Cancer Pushpak Pati Guillaume Jaume Zeineb Ayadi Kevin Thandiackal Behzad Bozorgtabar M. Gabrani O. Goksel 14 17 0 07 Jan 2023
Towards Explainable Motion Prediction using Heterogeneous Graph Representations Sandra Carrasco Limeros Sylwia Majchrowska Joakim Johnander Christoffer Petersson David Fernández Llorca 29 15 0 07 Dec 2022
Scale dependant layer for self-supervised nuclei encoding Peter Naylor Yao-Hung Hubert Tsai Marick Laé Makoto Yamada SSL 28 0 0 22 Jul 2022
A Survey of Trustworthy Graph Learning: Reliability, Explainability, and Privacy Protection Bingzhe Wu Jintang Li Junchi Yu Yatao Bian Hengtong Zhang ... Guangyu Sun Peng Cui Zibin Zheng Zhe Liu P. Zhao OOD 25 25 0 20 May 2022
Trustworthy Graph Neural Networks: Aspects, Methods and Trends He Zhang Bang Wu Xingliang Yuan Shirui Pan Hanghang Tong Jian Pei 45 104 0 16 May 2022
A Cognitive Explainer for Fetal ultrasound images classifier Based on Medical Concepts Ying-Shuai Wanga Yunxia Liua Licong Dongc Xuzhou Wua Huabin Zhangb Qiongyu Yed Desheng Sunc Xiaobo Zhoue Kehong Yuan 19 0 0 19 Jan 2022
Towards the Explanation of Graph Neural Networks in Digital Pathology with Information Flows Junchi Yu Tingyang Xu Ran He 31 5 0 18 Dec 2021
CoNIC: Colon Nuclei Identification and Counting Challenge 2022 S. Graham Mostafa Jahanifar Q. Vu G. Hadjigeorghiou Thomas Leech David R. J. Snead S. Raza F. Minhas Nasir M. Rajpoot 17 64 0 29 Nov 2021
BRACS: A Dataset for BReAst Carcinoma Subtyping in H&E Histology Images N. Brancati A. Anniciello Pushpak Pati D. Riccio G. Scognamiglio ... A. Foncubierta G. Botti M. Gabrani Florinda Feroce Maria Frucci 45 121 0 08 Nov 2021
Lizard: A Large-Scale Dataset for Colonic Nuclear Instance Segmentation and Classification S. Graham Mostafa Jahanifar A. Azam M. Nimir Yee Wah Tsang ... S. Raza H. Eldaly K. Gopalakrishnan David R. J. Snead Nasir M. Rajpoot 28 123 0 25 Aug 2021
Whole Slide Images are 2D Point Clouds: Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks Richard J. Chen Ming Y. Lu Muhammad Shaban Chengkuan Chen Tiffany Y. Chen Drew F. K. Williamson Faisal Mahmood 3DPC MedIm 41 151 0 27 Jul 2021
HistoCartography: A Toolkit for Graph Analytics in Digital Pathology Guillaume Jaume Pushpak Pati Valentin Anklin A. Foncubierta M. Gabrani 26 45 0 21 Jul 2021
A Survey on Graph-Based Deep Learning for Computational Histopathology David Ahmedt-Aristizabal M. Armin Simon Denman Clinton Fookes L. Petersson GNN AI4CE 19 106 0 01 Jul 2021
Graph-Based Deep Learning for Medical Diagnosis and Analysis: Past, Present and Future David Ahmedt-Aristizabal M. Armin Simon Denman Clinton Fookes L. Petersson 16 177 0 27 May 2021
Learning Whole-Slide Segmentation from Inexact and Incomplete Labels using Tissue Graphs Valentin Anklin Pushpak Pati Guillaume Jaume Behzad Bozorgtabar Antonio Foncubierta-Rodríguez Jean-Philippe Thiran M. Sibony M. Gabrani O. Goksel 50 38 0 04 Mar 2021
Hierarchical Graph Representations in Digital Pathology Pushpak Pati Guillaume Jaume A. Foncubierta Florinda Feroce A. Anniciello ... G. Botti Jean-Philippe Thiran Maria Frucci O. Goksel M. Gabrani 15 117 0 22 Feb 2021
Deep Graph Library: A Graph-Centric, Highly-Performant Package for Graph Neural Networks Minjie Wang Da Zheng Zihao Ye Quan Gan Mufei Li ... J. Zhao Haotong Zhang Alex Smola Jinyang Li Zheng-Wei Zhang AI4CE GNN 194 745 0 03 Sep 2019
CGC-Net: Cell Graph Convolutional Network for Grading of Colorectal Cancer Histology Images Yanning Zhou S. Graham Navid Alemi Koohbanani Muhammad Shaban Pheng-Ann Heng Nasir M. Rajpoot MedIm 27 173 0 03 Sep 2019
Towards A Rigorous Science of Interpretable Machine Learning Finale Doshi-Velez Been Kim XAI FaML 251 3,683 0 28 Feb 2017