UNETR: Transformers for 3D Medical Image Segmentation

18 March 2021

Andriy Myronenko

Papers citing "UNETR: Transformers for 3D Medical Image Segmentation"

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Title
Exploring Vanilla U-Net for Lesion Segmentation from Whole-body FDG-PET/CT Scans Jin Ye Hao Wang Ziyan Huang Zhongying Deng Yan-Cheng Su ... Qianrun Wu Yuncheng Yang Meng Wei Jingqi Niu Junjun He 27 12 0 14 Oct 2022
ConvTransSeg: A Multi-resolution Convolution-Transformer Network for Medical Image Segmentation Zhendi Gong Andrew P. French Guoping Qiu Xin Chen ViT MedIm 30 6 0 13 Oct 2022
Memory transformers for full context and high-resolution 3D Medical Segmentation Loic Themyr Clément Rambour Nicolas Thome Toby Collins Alexandre Hostettler ViT MedIm 19 4 0 11 Oct 2022
FocalUNETR: A Focal Transformer for Boundary-aware Segmentation of CT Images Chengyin Li Yao Qiang Vikram Goddla H. Bagher-Ebadian Prashant Khanduri I. Chetty D. Zhu ViT MedIm 42 9 0 06 Oct 2022
Trustworthy clinical AI solutions: a unified review of uncertainty quantification in deep learning models for medical image analysis Benjamin Lambert Florence Forbes A. Tucholka Senan Doyle Harmonie Dehaene M. Dojat 24 76 0 05 Oct 2022
APAUNet: Axis Projection Attention UNet for Small Target in 3D Medical Segmentation Yuncheng Jiang Zixun Zhang Shixi Qin Yao Guo Zhuguo Li Shuguang Cui 32 12 0 04 Oct 2022
Cascaded Multi-Modal Mixing Transformers for Alzheimer's Disease Classification with Incomplete Data Linfeng Liu Siyu Liu Lu Zhang X. To F. Nasrallah Shekhar S. Chandra MedIm 34 52 0 01 Oct 2022
Verifiable and Energy Efficient Medical Image Analysis with Quantised Self-attentive Deep Neural Networks Rakshith Sathish S. Khare Debdoot Sheet 34 4 0 30 Sep 2022
3D UX-Net: A Large Kernel Volumetric ConvNet Modernizing Hierarchical Transformer for Medical Image Segmentation Ho Hin Lee Shunxing Bao Yuankai Huo Bennett A. Landman OOD MedIm 54 133 0 29 Sep 2022
Transformer Meets Boundary Value Inverse Problems Ruchi Guo Shuhao Cao Long Chen MedIm 28 20 0 29 Sep 2022
Mine yOur owN Anatomy: Revisiting Medical Image Segmentation with Extremely Limited Labels Chenyu You Weicheng Dai Fenglin Liu Yifei Min Haoran Su Xiaoran Zhang Xiaoxiao Li David A. Clifton Lawrence H. Staib James S. Duncan 37 49 0 27 Sep 2022
Understanding the Tricks of Deep Learning in Medical Image Segmentation: Challenges and Future Directions Dong-Ming Zhang Yi-Mou Lin Hao Chen Zhuotao Tian Xin Yang Jinhui Tang Kwang-Ting Cheng VLM 25 11 0 21 Sep 2022
Attentive Symmetric Autoencoder for Brain MRI Segmentation Junjia Huang Haofeng Li Guanbin Li Xiang Wan MedIm 27 17 0 19 Sep 2022
TODE-Trans: Transparent Object Depth Estimation with Transformer Kan Chen Shaochen Wang Beihao Xia Dongxu Li Zheng Kan Bin Li ViT 19 15 0 18 Sep 2022
Hybrid Window Attention Based Transformer Architecture for Brain Tumor Segmentation Himashi Peiris Munawar Hayat Zhaolin Chen Gary Egan Mehrtash Harandi MedIm 15 4 0 16 Sep 2022
Rethinking the Unpretentious U-net for Medical Ultrasound Image Segmentation Gongping Chen L. Li Jianxun Zhang Yu Dai SSeg 13 65 0 15 Sep 2022
DOMINO: Domain-aware Model Calibration in Medical Image Segmentation Skylar E. Stolte Kyle Volle A. Indahlastari Alejandro Albizu A. Woods Kevin Brink Matthew Hale R. Fang 12 5 0 13 Sep 2022
TMSS: An End-to-End Transformer-based Multimodal Network for Segmentation and Survival Prediction Numan Saeed I. Sobirov Roba Al Majzoub Mohammad Yaqub 11 30 0 12 Sep 2022
EchoCoTr: Estimation of the Left Ventricular Ejection Fraction from Spatiotemporal Echocardiography Rand Muhtaseb Mohammad Yaqub ViT 19 24 0 09 Sep 2022
Spach Transformer: Spatial and Channel-wise Transformer Based on Local and Global Self-attentions for PET Image Denoising Se-In Jang T. Pan Ye Li P. Heidari Junyu Chen Quanzheng Li Kuang Gong ViT MedIm 20 27 0 07 Sep 2022
MMV_Im2Im: An Open Source Microscopy Machine Vision Toolbox for Image-to-Image Transformation Justin Sonneck Jianxu Chen VLM MedIm 19 5 0 06 Sep 2022
Time-distance vision transformers in lung cancer diagnosis from longitudinal computed tomography Thomas Z. Li Kaiwen Xu Riqiang Gao Yucheng Tang Thomas A. Lasko Fabien Maldonado K. Sandler Bennett A. Landman ViT MedIm 17 11 0 04 Sep 2022
AutoPET Challenge: Combining nn-Unet with Swin UNETR Augmented by Maximum Intensity Projection Classifier Lars Heiliger Zdravko Marinov Max Hasin André Ferreira Jana Fragemann ... D. Kersting Victor Alves Rainer Stiefelhagen Jan Egger Jens Kleesiek 11 9 0 02 Sep 2022
NestedFormer: Nested Modality-Aware Transformer for Brain Tumor Segmentation Zhaohu Xing Lequan Yu Liang Wan Tong Han Lei Zhu ViT MedIm 20 61 0 31 Aug 2022
Cats: Complementary CNN and Transformer Encoders for Segmentation Hao Li Dewei Hu Han Liu Jiacheng Wang I. Oguz ViT MedIm 19 22 0 24 Aug 2022
An Efficient Multi-Scale Fusion Network for 3D Organ at Risk (OAR) Segmentation Abhishek Srivastava Debesh Jha Elif Keles B. Aydogan M. Abazeed Ulas Bagci MedIm 19 6 0 15 Aug 2022
A Vision Transformer-Based Approach to Bearing Fault Classification via Vibration Signals Abid Hasan Zim Aeyan Ashraf Aquib Iqbal Asad U. Malik Minoru Kuribayashi 8 10 0 15 Aug 2022
Recent Progress in Transformer-based Medical Image Analysis Zhao-cheng Liu Qiujie Lv Ziduo Yang Yifan Li Chau Hung Lee Leizhao Shen MedIm 40 56 0 13 Aug 2022
OpenMedIA: Open-Source Medical Image Analysis Toolbox and Benchmark under Heterogeneous AI Computing Platforms Jiafan Zhuang Xiansong Huang Yang Yang Jiancong Chen Yue Yu Wei-Nan Gao Ge Li Jie Chen Tong Zhang VLM 12 5 0 11 Aug 2022
3D Vision with Transformers: A Survey Jean Lahoud Jiale Cao F. Khan Hisham Cholakkal Rao Muhammad Anwer Salman Khan Ming Yang ViT MedIm 27 32 0 08 Aug 2022
Ensembled Autoencoder Regularization for Multi-Structure Segmentation for Kidney Cancer Treatment D. J. Hresko Marek Kurej J. Gazda P. Drotár SSeg MedIm 11 0 0 08 Aug 2022
TransDeepLab: Convolution-Free Transformer-based DeepLab v3+ for Medical Image Segmentation Reza Azad Moein Heidari M. Shariatnia Ehsan Khodapanah Aghdam Sanaz Karimijafarbigloo Ehsan Adeli Dorit Merhof ViT MedIm 9 93 0 01 Aug 2022
FCSN: Global Context Aware Segmentation by Learning the Fourier Coefficients of Objects in Medical Images Y. Jeon Hongfei Yang Mengling Feng 11 2 0 29 Jul 2022
A Transformer-based Generative Adversarial Network for Brain Tumor Segmentation Liqun Huang Long Chen Bai-wen Zhang S. Chai MedIm ViT 13 27 0 28 Jul 2022
Generalizable multi-task, multi-domain deep segmentation of sparse pediatric imaging datasets via multi-scale contrastive regularization and multi-joint anatomical priors Arnaud Boutillon Pierre-Henri Conze C. Pons Valérie Burdin Bhushan S Borotikar 34 18 0 27 Jul 2022
TransNorm: Transformer Provides a Strong Spatial Normalization Mechanism for a Deep Segmentation Model Reza Azad Mohammad T. Al-Antary Moein Heidari Dorit Merhof ViT MedIm 28 72 0 27 Jul 2022
Improved Super Resolution of MR Images Using CNNs and Vision Transformers Dwarikanath Mahapatra SupR ViT MedIm 19 5 0 24 Jul 2022
High-Resolution Swin Transformer for Automatic Medical Image Segmentation Chen Wei Shenghan Ren Kaitai Guo Haihong Hu Jimin Liang ViT OOD MedIm 17 36 0 23 Jul 2022
Comparative Validation of AI and non-AI Methods in MRI Volumetry to Diagnose Parkinsonian Syndromes Joomee Song Juyoung Hahm Jisoo Lee Chae Yeon Lim M. Chung J. Youn J. Cho J. H. Ahn Kyungsu Kim 11 8 0 23 Jul 2022
Focused Decoding Enables 3D Anatomical Detection by Transformers Bastian Wittmann Fernando Navarro Suprosanna Shit Bjoern H. Menze ViT MedIm 13 8 0 21 Jul 2022
Large-Kernel Attention for 3D Medical Image Segmentation Hao Li Yang Nan Javier Del Ser Guang Yang MedIm 25 25 0 19 Jul 2022
HiFormer: Hierarchical Multi-scale Representations Using Transformers for Medical Image Segmentation Moein Heidari A. Kazerouni Milad Soltany Kadarvish Reza Azad Ehsan Khodapanah Aghdam Julien Cohen-Adad Dorit Merhof MedIm ViT 25 178 0 18 Jul 2022
CKD-TransBTS: Clinical Knowledge-Driven Hybrid Transformer with Modality-Correlated Cross-Attention for Brain Tumor Segmentation Jianwei Lin Jiatai Lin Chenghao Lu Hao Chen Huan Lin ... Biao Huang C. Liang Guoqiang Han Zaiyi Liu Chu Han MedIm 19 67 0 15 Jul 2022
Brain-Aware Replacements for Supervised Contrastive Learning in Detection of Alzheimer's Disease Mehmet Saygin Seyfiouglu Zixuan Liu Pranav Kamath Sadjyot Gangolli Sheng Wang T. Grabowski Linda G. Shapiro MedIm 16 14 0 11 Jul 2022
Radiomics-Guided Global-Local Transformer for Weakly Supervised Pathology Localization in Chest X-Rays Yan Han G. Holste Ying Ding Ahmed H. Tewfik Yifan Peng Zhangyang Wang LM&MA ViT 26 14 0 10 Jul 2022
Swin Deformable Attention U-Net Transformer (SDAUT) for Explainable Fast MRI Jiahao Huang Xiaodan Xing Zhifan Gao Guang Yang ViT MedIm 19 26 0 05 Jul 2022
Transformer based Models for Unsupervised Anomaly Segmentation in Brain MR Images Ahmed Ghorbel Ahmed Aldahdooh Shadi Albarqouni Neuherberg ViT MedIm 22 4 0 05 Jul 2022
Shifts 2.0: Extending The Dataset of Real Distributional Shifts A. Malinin A. Athanasopoulos M. Barakovic Meritxell Bach Cuadra Mark J. F. Gales ... Francesco La Rosa Eli Sivena V. Tsarsitalidis Efi Tsompopoulou E. Volf OOD 22 28 0 30 Jun 2022
Implicit U-Net for volumetric medical image segmentation Sergio Naval Marimont G. Tarroni SSeg 27 2 0 30 Jun 2022
The Lighter The Better: Rethinking Transformers in Medical Image Segmentation Through Adaptive Pruning Xian Lin Li Yu Kwang-Ting Cheng Zengqiang Yan ViT MedIm 22 31 0 29 Jun 2022