UNETR: Transformers for 3D Medical Image Segmentation

18 March 2021

Andriy Myronenko

Papers citing "UNETR: Transformers for 3D Medical Image Segmentation"

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BATFormer: Towards Boundary-Aware Lightweight Transformer for Efficient Medical Image Segmentation Xian Lin Li Yu Kwang-Ting Cheng Zengqiang Yan ViT MedIm 20 32 0 29 Jun 2022
Neural Transformers for Intraductal Papillary Mucosal Neoplasms (IPMN) Classification in MRI images Federica Proietto Salanitri Giovanni Bellitto S. Palazzo Ismail Irmakci Michael B. Wallace ... S. Hoogenboom Marco Aldinucci Ulas Bagci D. Giordano C. Spampinato ViT MedIm 6 7 0 21 Jun 2022
Deep Active Latent Surfaces for Medical Geometries Patrick M. Jensen Udaranga Wickramasinghe Anders B. Dahl Pascal Fua Vedrana Andersen Dahl MedIm 20 2 0 21 Jun 2022
SYMBA: Symbolic Computation of Squared Amplitudes in High Energy Physics with Machine Learning Abdulhakim Alnuqaydan S. Gleyzer Harrison B. Prosper 16 14 0 17 Jun 2022
AMOS: A Large-Scale Abdominal Multi-Organ Benchmark for Versatile Medical Image Segmentation Yuanfeng Ji Haotian Bai Jie-jin Yang Chongjian Ge Ye Zhu ... Zhuguo Li Lingyan Zhang Wanling Ma Xiang Wan Ping Luo OOD 15 295 0 16 Jun 2022
A new method incorporating deep learning with shape priors for left ventricular segmentation in myocardial perfusion SPECT images Fubao Zhu Jinyu Zhao Chen Zhao S. Tang Ji Nan ... Zhongqiang Zhao Jianzhou Shi Zenghong Chen Zhixin Jiang Weihua Zhou 23 17 0 07 Jun 2022
EVAC+: Multi-scale V-net with Deep Feature CRF Layers for Brain Extraction Jong Sung Park S. Fadnavis Eleftherios Garyfallidis 34 0 0 06 Jun 2022
mmFormer: Multimodal Medical Transformer for Incomplete Multimodal Learning of Brain Tumor Segmentation Yao Zhang Nanjun He Jiawei Yang Yuexiang Li Dong Wei Yawen Huang Yang Zhang Zhiqiang He Yefeng Zheng MedIm 23 107 0 06 Jun 2022
Patcher: Patch Transformers with Mixture of Experts for Precise Medical Image Segmentation Yanglan Ou Ye Yuan Xiaolei Huang Stephen T. C. Wong John Volpi James Z. Wang K. Wong ViT MoE MedIm 10 9 0 03 Jun 2022
Transforming medical imaging with Transformers? A comparative review of key properties, current progresses, and future perspectives Jun Li Junyu Chen Yucheng Tang Ce Wang Bennett A. Landman S. K. Zhou ViT OOD MedIm 21 20 0 02 Jun 2022
MISSU: 3D Medical Image Segmentation via Self-distilling TransUNet Nan Wang Shaohui Lin Xiaoxiao Li Ke Li Yunhang Shen Yue Gao Lizhuang Ma ViT MedIm 41 33 0 02 Jun 2022
Dynamic Linear Transformer for 3D Biomedical Image Segmentation Zheyu Zhang Ulas Bagci ViT MedIm 17 12 0 01 Jun 2022
The Fully Convolutional Transformer for Medical Image Segmentation Athanasios Tragakis Chaitanya Kaul Roderick Murray-Smith D. Husmeier ViT MedIm 20 56 0 01 Jun 2022
Memory-efficient Segmentation of High-resolution Volumetric MicroCT Images Yuan Wang Laura Blackie I. Miguel-Aliaga Wenjia Bai 3DV 18 3 0 31 May 2022
Self-supervised 3D anatomy segmentation using self-distilled masked image transformer (SMIT) Jue Jiang N. Tyagi K. Tringale C. Crane H. Veeraraghavan MedIm 27 34 0 20 May 2022
3DConvCaps: 3DUnet with Convolutional Capsule Encoder for Medical Image Segmentation Minh-Trieu Tran Viet-Khoa Vo-Ho Ngan T. H. Le 3DPC MedIm 20 13 0 19 May 2022
blob loss: instance imbalance aware loss functions for semantic segmentation Florian Kofler Suprosanna Shit Ivan Ezhov Lucas Fidon Izabela Horvath ... J. Peeken Tom Kamiel Magda Vercauteren C. Zimmer Benedikt Wiestler Bjoern H. Menze 6 18 0 17 May 2022
Vision Transformer: Vit and its Derivatives Zujun Fu ViT 33 6 0 12 May 2022
Pseudo-Label Guided Multi-Contrast Generalization for Non-Contrast Organ-Aware Segmentation Ho Hin Lee Yucheng Tang Riqiang Gao Qi Yang Xin Yu Shunxing Bao J. Terry J. Carr Yuankai Huo Bennett A. Landman 16 1 0 12 May 2022
Automatic segmentation of meniscus based on MAE self-supervision and point-line weak supervision paradigm Yuhan Xie Kexin Jiang Zhiyong Zhang Shaolong Chen Xiaodong Zhang Changzhen Qiu 16 1 0 07 May 2022
Application of belief functions to medical image segmentation: A review Ling Huang S. Ruan Thierry Denoeux EDL MedIm 27 30 0 03 May 2022
Masked Image Modeling Advances 3D Medical Image Analysis Zekai Chen Devansh Agarwal Kshitij Aggarwal Wiem Safta Samit Hirawat V. Sethuraman Mariann Micsinai Balan Kevin Brown 16 69 0 25 Apr 2022
Continual Hippocampus Segmentation with Transformers Amin Ranem Camila González Anirban Mukhopadhyay MedIm CLL 11 16 0 17 Apr 2022
3D Shuffle-Mixer: An Efficient Context-Aware Vision Learner of Transformer-MLP Paradigm for Dense Prediction in Medical Volume Jianye Pang Cheng Jiang Yihao Chen Jianbo Chang M. Feng Renzhi Wang Jianhua Yao ViT MedIm 28 11 0 14 Apr 2022
Negligible effect of brain MRI data preprocessing for tumor segmentation E. Kondrateva Polina Druzhinina A. Dalechina S. Zolotova A. Golanov B. Shirokikh Mikhail Belyaev Anvar Kurmukov 23 3 0 11 Apr 2022
Multimodal Multi-Head Convolutional Attention with Various Kernel Sizes for Medical Image Super-Resolution Mariana-Iuliana Georgescu Radu Tudor Ionescu A. Miron O. Savencu Nicolae-Cătălin Ristea N. Verga F. Khan SupR 13 46 0 08 Apr 2022
UNetFormer: A Unified Vision Transformer Model and Pre-Training Framework for 3D Medical Image Segmentation Ali Hatamizadeh Ziyue Xu Dong Yang Wenqi Li H. Roth Daguang Xu ViT MedIm 21 29 0 01 Apr 2022
Target and Task specific Source-Free Domain Adaptive Image Segmentation VS Vibashan Jeya Maria Jose Valanarasu Vishal M. Patel OOD 22 17 0 29 Mar 2022
Transformers Meet Visual Learning Understanding: A Comprehensive Review Yuting Yang Licheng Jiao Xuantong Liu F. Liu Shuyuan Yang Zhixi Feng Xu Tang ViT MedIm 24 28 0 24 Mar 2022
Stable Optimization for Large Vision Model Based Deep Image Prior in Cone-Beam CT Reconstruction Minghui Wu Yangdi Xu Yingying Xu Guangwei Wu Qingqing Chen Hongxiang Lin MedIm 9 0 0 23 Mar 2022
MONAI Label: A framework for AI-assisted Interactive Labeling of 3D Medical Images A. Diaz-Pinto Sachidanand Alle V. Nath Yucheng Tang Alvin Ihsani ... Daguang Xu Prerna Dogra Sebastien Ourselin Andrew Feng M. Jorge Cardoso 19 71 0 23 Mar 2022
TransFusion: Multi-view Divergent Fusion for Medical Image Segmentation with Transformers Ding Liu Yunhe Gao Qilong Zhangli Ligong Han Xiaoxiao He ... Song Wen Qi Chang Zhennan Yan Mu Zhou Dimitris N. Metaxas MedIm 37 33 0 21 Mar 2022
SepTr: Separable Transformer for Audio Spectrogram Processing Nicolae-Cătălin Ristea Radu Tudor Ionescu F. Khan ViT 18 30 0 17 Mar 2022
PC-SwinMorph: Patch Representation for Unsupervised Medical Image Registration and Segmentation Lihao Liu Zhening Huang Pietro Lio' Carola-Bibiane Schönlieb Angelica I. Aviles-Rivero 16 16 0 10 Mar 2022
Self Pre-training with Masked Autoencoders for Medical Image Classification and Segmentation Lei Zhou Huidong Liu Joseph Bae Junjun He Dimitris Samaras Prateek Prasanna MedIm ViT 13 64 0 10 Mar 2022
UNeXt: MLP-based Rapid Medical Image Segmentation Network Jeya Maria Jose Valanarasu Vishal M. Patel SSeg 27 477 0 09 Mar 2022
PHTrans: Parallelly Aggregating Global and Local Representations for Medical Image Segmentation Wentao Liu Tong Tian Weijing Xu Huihua Yang Xipeng Pan Songlin Yan Lemeng Wang ViT MedIm 22 50 0 09 Mar 2022
Deep-ASPECTS: A Segmentation-Assisted Model for Stroke Severity Measurement Ujjwal Upadhyay Mukul Ranjan S. Golla Swetha Tanamala Preetham Sreenivas Sasank Chilamkurthy J. Pandian J. Tarpley 8 4 0 05 Mar 2022
Characterizing Renal Structures with 3D Block Aggregate Transformers Xin Yu Yucheng Tang Yinchi Zhou Riqiang Gao Qi Yang ... Yuankai Huo Zhoubing Xu Thomas A. Lasko R. Abramson Bennett A. Landman MedIm ViT 16 3 0 04 Mar 2022
MixCL: Pixel label matters to contrastive learning Jun Li Quan Quan S. Kevin Zhou SSL 23 1 0 04 Mar 2022
Universal Segmentation of 33 Anatomies Peng Liu Yang Deng Ce Wang Yuan Hui Qian Li ... You Hao Honghu Xiao Chunpeng Zhao Xin Wu S. Kevin Zhou 23 9 0 04 Mar 2022
Recent Advances in Vision Transformer: A Survey and Outlook of Recent Work Khawar Islam ViT 28 45 0 03 Mar 2022
Contextual Attention Network: Transformer Meets U-Net Reza Azad Moein Heidari Yuli Wu Dorit Merhof ViT MedIm 15 71 0 02 Mar 2022
A Data-scalable Transformer for Medical Image Segmentation: Architecture, Model Efficiency, and Benchmark Yunhe Gao Mu Zhou Ding Liu Zhennan Yan Shaoting Zhang Dimitris N. Metaxas ViT MedIm 18 68 0 28 Feb 2022
Diffeomorphic Image Registration with Neural Velocity Field Kun Han Shanlin Sun Xiangyi Yan Chenyu You Hao Tang Junayed Naushad Haoyu Ma Deying Kong Xiaohui Xie MedIm 20 21 0 25 Feb 2022
Factorizer: A Scalable Interpretable Approach to Context Modeling for Medical Image Segmentation Pooya Ashtari Diana Sima L. De Lathauwer D. Sappey-Marinier F. Maes Sabine Van Huffel ViT MedIm 21 35 0 24 Feb 2022
Transformers in Medical Image Analysis: A Review Kelei He Chen Gan Zhuoyuan Li I. Rekik Zihao Yin Wen Ji Yang Gao Qian Wang Junfeng Zhang D. Shen ViT MedIm 20 254 0 24 Feb 2022
Joint Liver and Hepatic Lesion Segmentation in MRI using a Hybrid CNN with Transformer Layers Georg Hille Shubham Agrawal Pavan Tummala C. Wybranski M. Pech A. Surov S. Saalfeld ViT MedIm 11 26 0 26 Jan 2022
Transformers in Medical Imaging: A Survey Fahad Shamshad Salman Khan Syed Waqas Zamir Muhammad Haris Khan Munawar Hayat F. Khan H. Fu ViT LM&MA MedIm 106 663 0 24 Jan 2022
Improving Across-Dataset Brain Tissue Segmentation Using Transformer Vishwanatha M. Rao Zihang Wan Soroush Arabshahi David J. Ma Pin-Yu Lee Ye Tian Xuzhe Zhang Andrew F. Laine Jia Guo ViT MedIm 17 11 0 21 Jan 2022