SynthSeg: Segmentation of brain MRI scans of any contrast and resolution without retraining

20 July 2021

Juan Eugenio Iglesias

OOD

MedIm

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Papers citing "SynthSeg: Segmentation of brain MRI scans of any contrast and resolution without retraining"

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Title
Skull stripping with purely synthetic data Jong Sung Park Juhyung Ha Siddhesh P. Thakur Alexandra Badea Spyridon Bakas Eleftherios Garyfallidis 33 0 0 12 May 2025
Regression is all you need for medical image translation Sebastian Rassmann David Kügler Christian Ewert Martin Reuter DiffM MedIm 165 0 0 04 May 2025
Anatomical Similarity as a New Metric to Evaluate Brain Generative Models Bahram Jafrasteh Wei Peng Cheng Wan Yimin Luo Ehsan Adeli Qingyu Zhao DiffM MedIm 62 0 0 30 Apr 2025
Explainability of AI Uncertainty: Application to Multiple Sclerosis Lesion Segmentation on MRI N. Molchanova P. M. Gordaliza A. Cagol Mario Ocampo Pineda Po-Jui Lu ... Delphine Ribes A. Depeursinge C. Granziera Henning Muller Meritxell Bach Cuadra UQCV 53 0 0 07 Apr 2025
BrainMRDiff: A Diffusion Model for Anatomically Consistent Brain MRI Synthesis Moinak Bhattacharya Saumya Gupta Annie Singh C. L. P. Chen Gagandeep Singh Prateek Prasanna MedIm 26 0 0 06 Apr 2025
Point Cloud-based Grasping for Soft Hand Exoskeleton Chen Hu Enrica Tricomi Eojin Rho Daekyum Kim L. Masia Shan Luo Letizia Gionfrida 36 0 0 04 Apr 2025
MultiMorph: On-demand Atlas Construction S. M. Abulnaga Andrew Hoopes Neel Dey Malte Hoffmann Marianne Rakic B. Fischl John Guttag Adrian V. Dalca 36 0 0 31 Mar 2025
Learning to segment anatomy and lesions from disparately labeled sources in brain MRI Meva Himmetoglu Ilja Ciernik E. Konukoglu 39 0 0 24 Mar 2025
ECLARE: Efficient cross-planar learning for anisotropic resolution enhancement Samuel W. Remedios Shuwen Wei Shuo Han Jinwei Zhang A. Carass K. Schilling D. L. Pham Jerry L. Prince Blake E Dewey 48 0 0 14 Mar 2025
Reference-Free 3D Reconstruction of Brain Dissection Photographs with Machine Learning Lin Tian Sean I. Young Jonathan Williams Ramirez Dina Zemlyanker Lucas Jacob Deden Binder ... Derek H. Oakley Bradley T. Hyman O. Puonti Matthew S. Rosen J. Iglesias 56 0 0 13 Mar 2025
How Should We Evaluate Uncertainty in Accelerated MRI Reconstruction? Luca Trautmann Peter Wijeratne Itamar Ronen Ivor Simpson 61 0 0 13 Mar 2025
Resolution Invariant Autoencoder Ashay Patel Michela Antonelli Sebastien Ourselin M. Jorge Cardoso OOD 69 0 0 12 Mar 2025
NimbleReg: A light-weight deep-learning framework for diffeomorphic image registration Antoine Legouhy Ross Callaghan Nolah Mazet Vivien Julienne H. Azadbakht Hui Zhang MedIm 3DH 60 0 0 10 Mar 2025
Spatial regularisation for improved accuracy and interpretability in keypoint-based registration Benjamin Billot Ramya Muthukrishnan Esra Abaci Turk Ellen Grant N. Ayache H. Delingette Polina Golland 3DPC 64 1 0 06 Mar 2025
Building 3D In-Context Learning Universal Model in Neuroimaging Jiesi Hu Hanyang Peng Yanwu Yang Xutao Guo Yang Shang P. Shi Chenfei Ye Ting Ma 62 0 0 04 Mar 2025
Synthesizing Individualized Aging Brains in Health and Disease with Generative Models and Parallel Transport Jingru Fu Yuqi Zheng Neel Dey D. Ferreira R. Moreno MedIm 29 0 0 28 Feb 2025
Pathological MRI Segmentation by Synthetic Pathological Data Generation in Fetuses and Neonates Misha P.T Kaandorp Damola Agbelese Hosna Asma-ull Hyun Gi Kim K. Payette P. Grehten Gennari Antonio Giulio L. Lanczi Andras Jakab MedIm 66 1 0 31 Jan 2025
Learning accurate rigid registration for longitudinal brain MRI from synthetic data Jingru Fu Adrian V. Dalca B. Fischl R. Moreno Malte Hoffmann MedIm 85 0 0 22 Jan 2025
Unified 3D MRI Representations via Sequence-Invariant Contrastive Learning Liam Chalcroft Jenny Crinion Cathy J. Price John Ashburner 144 0 0 21 Jan 2025
MultiverSeg: Scalable Interactive Segmentation of Biomedical Imaging Datasets with In-Context Guidance Hallee E. Wong Jose Javier Gonzalez Ortiz John Guttag Adrian V. Dalca 88 0 0 19 Dec 2024
SegHeD+: Segmentation of Heterogeneous Data for Multiple Sclerosis Lesions with Anatomical Constraints and Lesion-aware Augmentation Berke Doga Basaran Paul M. Matthews Wenjia Bai 73 0 0 14 Dec 2024
vesselFM: A Foundation Model for Universal 3D Blood Vessel Segmentation Bastian Wittmann Yannick Wattenberg Tamaz Amiranashvili Suprosanna Shit Bjoern H. Menze 83 3 0 26 Nov 2024
Maximizing domain generalization in fetal brain tissue segmentation: the role of synthetic data generation, intensity clustering and real image fine-tuning Vladyslav Zalevskyi Thomas Sanchez Margaux Roulet Hélène Lajous Jordina Aviles Verdera Jana Hutter Hamza Kebiri Meritxell Bach Cuadra OOD 46 1 0 11 Nov 2024
Volumetric Conditioning Module to Control Pretrained Diffusion Models for 3D Medical Images Suhyun Ahn Wonjung Park Jihoon Cho Seunghyuck Park Jinah Park MedIm 26 0 0 29 Oct 2024
Search Wide, Focus Deep: Automated Fetal Brain Extraction with Sparse Training Data Javid Dadashkarimi Valeria Pena Trujillo Camilo Jaimes Lilla Zöllei Malte Hoffmann 24 0 0 27 Oct 2024
Unified Cross-Modal Image Synthesis with Hierarchical Mixture of Product-of-Experts R. Dorent Nazim Haouchine A. Golby Sarah F. Frisken Tina Kapur W. Wells 33 0 0 25 Oct 2024
Hierarchical Uncertainty Estimation for Learning-based Registration in Neuroimaging Xiaoling Hu Karthik Gopinath Peirong Liu Malte Hoffmann Koen van Leemput O. Puonti J. Iglesias OOD UQCV 40 0 0 11 Oct 2024
VoxelPrompt: A Vision-Language Agent for Grounded Medical Image Analysis Andrew Hoopes V. Butoi John Guttag Adrian V. Dalca MedIm LM&MA 35 1 0 10 Oct 2024
Automated quality assessment using appearance-based simulations and hippocampus segmentation on low-field paediatric brain MR images V. Sundaresan Nicola K. Dinsdale MedIm 16 0 0 08 Oct 2024
SegHeD: Segmentation of Heterogeneous Data for Multiple Sclerosis Lesions with Anatomical Constraints Berke Doga Basaran Xinru Zhang Paul M. Matthews Wenjia Bai 34 1 0 02 Oct 2024
Efficient Semantic Diffusion Architectures for Model Training on Synthetic Echocardiograms D. Stojanovski Mariana da Silva P. Lamata A. Beqiri Alberto Gomez MedIm DiffM 22 1 0 28 Sep 2024
Shape-intensity knowledge distillation for robust medical image segmentation Wenhui Dong Bo Du Yongchao Xu 28 0 0 26 Sep 2024
Towards the Discovery of Down Syndrome Brain Biomarkers Using Generative Models Jordi Malé Juan Fortea Mateus Rozalem Aranha Yann Heuzé Neus Martínez-Abadías Xavier Sevillano DiffM 24 1 0 20 Sep 2024
DDEvENet: Evidence-based Ensemble Learning for Uncertainty-aware Brain Parcellation Using Diffusion MRI Chenjun Li Dian Yang Shun Yao Shuyue Wang Ye Wu ... C. Westin L. O’Donnell N. Sochen O. Pasternak Fan Zhang UQCV 45 0 0 11 Sep 2024
Recon-all-clinical: Cortical surface reconstruction and analysis of heterogeneous clinical brain MRI Karthik Gopinath Douglas N. Greve C. Magdamo Steve Arnold Sudeshna Das O. Puonti Juan Eugenio Iglesias 21 1 0 05 Sep 2024
Large Language Models for Multimodal Deformable Image Registration Mingrui Ma Weijie Wang Jie Ning Jianfeng He N. Sebe Bruno Lepri 39 1 0 20 Aug 2024
Optimizing Synthetic Data for Enhanced Pancreatic Tumor Segmentation Linkai Peng Zheyuan Zhang Gorkem Durak Frank H. Miller A. Medetalibeyoğlu Michael B. Wallace Ulas Bagci MedIm 34 2 0 27 Jul 2024
SCIsegV2: A Universal Tool for Segmentation of Intramedullary Lesions in Spinal Cord Injury E. Karthik J. Valošek Lynn Farner Dario Pfyffer Simon Schading-Sassenhausen ... Kenneth A Weber Maryam Seif Rhscir Network Imaging Group Patrick Freund Julien Cohen-Adad 40 2 0 24 Jul 2024
HyperSpace: Hypernetworks for spacing-adaptive image segmentation Samuel Joutard Maximilian Pietsch Raphael Prevost 47 3 0 04 Jul 2024
Neurovascular Segmentation in sOCT with Deep Learning and Synthetic Training Data Etienne Chollet Yael Balbastre Chiara Mauri C. Magnain Bruce Fischl Hui Wang 34 0 0 01 Jul 2024
Impact of Initialization on Intra-subject Pediatric Brain MR Image Registration: A Comparative Analysis between SyN ANTs and Deep Learning-Based Approaches Andjela Dimitrijevic V. Noblet B. Leener 25 0 0 28 Jun 2024
High-resolution segmentations of the hypothalamus and its subregions for training of segmentation models Lívia Rodrigues Martina Bocchetta O. Puonti Douglas N. Greve A. C. Londe Marcondes França Simone Appenzeller Letícia Rittner Juan Eugenio Iglesias 15 3 0 27 Jun 2024
Deep learning-based brain segmentation model performance validation with clinical radiotherapy CT Selena I Huisman M. Maspero M. Philippens Joost Verhoeff Szabolcs David OOD 22 1 0 25 Jun 2024
FreeTumor: Advance Tumor Segmentation via Large-Scale Tumor Synthesis Linshan Wu Jiaxin Zhuang Xuefeng Ni Hao Chen MedIm 36 12 0 03 Jun 2024
SynthBA: Reliable Brain Age Estimation Across Multiple MRI Sequences and Resolutions Lemuel Puglisi Alessia Rondinella Linda De Meo Francesco Guarnera S. Battiato Daniele Ravi 31 1 0 01 Jun 2024
CARL: A Framework for Equivariant Image Registration Hastings Greer Lin Tian François-Xavier Vialard Roland Kwitt R. Estépar Marc Niethammer 3DPC MedIm 35 0 0 27 May 2024
BrainMorph: A Foundational Keypoint Model for Robust and Flexible Brain MRI Registration Alan Q. Wang Rachit Saluja Heejong Kim Xinzi He Adrian V. Dalca M. Sabuncu 31 3 0 22 May 2024
A label-free and data-free training strategy for vasculature segmentation in serial sectioning OCT data Etienne Chollet Yael Balbastre C. Magnain Bruce Fischl Hui Wang 20 1 0 22 May 2024
Enhancing Spatiotemporal Disease Progression Models via Latent Diffusion and Prior Knowledge Lemuel Puglisi Daniel C. Alexander Daniele Ravi MedIm 25 10 0 06 May 2024
VMambaMorph: a Multi-Modality Deformable Image Registration Framework based on Visual State Space Model with Cross-Scan Module Ziyang Wang Jian-Qing Zheng Chao Ma Tao Guo Mamba 45 3 0 07 Apr 2024