SynthSeg: Segmentation of brain MRI scans of any contrast and resolution without retraining

20 July 2021

Juan Eugenio Iglesias

OOD

MedIm

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Papers citing "SynthSeg: Segmentation of brain MRI scans of any contrast and resolution without retraining"

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Title
Synthetic Data for Robust Stroke Segmentation Liam Chalcroft Ioannis Pappas Cathy J. Price John Ashburner 28 0 0 02 Apr 2024
Surface-based parcellation and vertex-wise analysis of ultra high-resolution ex vivo 7 tesla MRI in Alzheimer's disease and related dementias Pulkit Khandelwal Michael Tran Duong Lisa Levorse Constanza Fuentes Amanda E Denning ... Corey McMillan M. Tisdall Sandhitsu R. Das David A. Wolk Paul Yushkevich 16 0 0 28 Mar 2024
Interactive Manipulation and Visualization of 3D Brain MRI for Surgical Training Siddharth Jha Zichen Gui Benjamin Delbos Richard Moreau A. Lelevé Irene Cheng 16 1 0 24 Mar 2024
Towards Automatic Abdominal MRI Organ Segmentation: Leveraging Synthesized Data Generated From CT Labels Cosmin Ciausu Deepa Krishnaswamy Benjamin Billot Steve Pieper Ron Kikinis Andrey Fedorov 27 1 0 22 Mar 2024
SYNCS: Synthetic Data and Contrastive Self-Supervised Training for Central Sulcus Segmentation Vladyslav Zalevskyi Kristoffer Hougaard Madsen 16 0 0 22 Mar 2024
7T MRI Synthesization from 3T Acquisitions Qiming Cui Duygu Tosun Pratik Mukherjee Reza Abbasi-Asl MedIm 24 1 0 13 Mar 2024
PEPSI: Pathology-Enhanced Pulse-Sequence-Invariant Representations for Brain MRI Peirong Liu O. Puonti Annabel Sorby-Adams W. T. Kimberly Juan Eugenio Iglesias 29 5 0 10 Mar 2024
Towards Generalizable Tumor Synthesis Qi Chen Xiaoxi Chen Haorui Song Zhiwei Xiong Alan L. Yuille Chen Wei Zongwei Zhou MedIm 50 40 0 29 Feb 2024
Boosting Skull-Stripping Performance for Pediatric Brain Images William Kelley Nathan Ngo Adrian V. Dalca Bruce Fischl Lilla Zöllei Malte Hoffmann 19 6 0 26 Feb 2024
SynthBrainGrow: Synthetic Diffusion Brain Aging for Longitudinal MRI Data Generation in Young People Anna Zapaishchykova Benjamin H. Kann Divyanshu Tak Z. Ye Daphne A. Haas-Kogan Hugo J. W. L. Aerts 28 0 0 22 Feb 2024
IGUANe: a 3D generalizable CycleGAN for multicenter harmonization of brain MR images Vincent Roca Grégory Kuchcinski J. Pruvo Dorian Manouvriez Renaud Lopes MedIm 16 4 0 05 Feb 2024
H-SynEx: Using synthetic images and ultra-high resolution ex vivo MRI for hypothalamus subregion segmentation Lívia Rodrigues Martina Bocchetta O. Puonti Douglas N. Greve A. C. Londe Marcondes França Simone Appenzeller J. Iglesias Letícia Rittner 13 1 0 30 Jan 2024
JUMP: A joint multimodal registration pipeline for neuroimaging with minimal preprocessing Adrià Casamitjana Juan Eugenio Iglesias Raul Tudela A. Niñerola-Baizán R. Sala-Llonch MedIm 9 0 0 25 Jan 2024
MambaMorph: a Mamba-based Framework for Medical MR-CT Deformable Registration Tao Guo Yinuo Wang Shihao Shu Diansheng Chen Zhouping Tang Cai Meng Xiangzhi Bai Mamba 22 8 0 25 Jan 2024
Local Gamma Augmentation for Ischemic Stroke Lesion Segmentation on MRI Jon Middleton Marko Bauer Kaining Sheng Jacob Johansen Mathias Perslev Silvia Ingala Mads Nielsen A. Pai 28 1 0 12 Jan 2024
SE(3)-Equivariant and Noise-Invariant 3D Rigid Motion Tracking in Brain MRI Benjamin Billot Neel Dey Daniel Moyer M. Hoffmann Esra Abaci Turk B. Gagoski Ellen Grant Polina Golland 3DPC 23 6 0 21 Dec 2023
DG-TTA: Out-of-domain Medical Image Segmentation through Augmentation and Descriptor-driven Domain Generalization and Test-Time Adaptation Christian Weihsbach Christian N. Kruse Alexander Bigalke Mattias P. Heinrich 31 1 0 11 Dec 2023
Quantifying white matter hyperintensity and brain volumes in heterogeneous clinical and low-field portable MRI Pablo Laso Stefano Cerri Annabel Sorby-Adams Jennifer Guo F. Mateen ... J. Wolterink Arman Eshaghi F. Barkhof W. T. Kimberly J. Iglesias 15 11 0 08 Dec 2023
Brain-ID: Learning Contrast-agnostic Anatomical Representations for Brain Imaging Peirong Liu O. Puonti Xiaoling Hu Daniel C. Alexander Juan Eugenio Iglesias MedIm OOD 34 7 0 28 Nov 2023
UAE: Universal Anatomical Embedding on Multi-modality Medical Images Xiaoyu Bai Fan Bai Xiaofei Huo Jia Ge Jingjing Lu X. Ye Ke Yan Yong-quan Xia 27 3 0 25 Nov 2023
Multi-delay arterial spin-labeled perfusion estimation with biophysics simulation and deep learning Renjiu Hu Qihao Zhang P. Spincemaille Thanh D. Nguyen Yi Wang MedIm 23 0 0 17 Nov 2023
USLR: an open-source tool for unbiased and smooth longitudinal registration of brain MR Adrià Casamitjana R. Sala-Llonch Karim Lekadir Juan Eugenio Iglesias 11 1 0 14 Nov 2023
A deformation-based morphometry framework for disentangling Alzheimer's disease from normal aging using learned normal aging templates Jingru Fu Daniel Ferreira Orjan Smedby R. Moreno MedIm 19 1 0 14 Nov 2023
Simulation of acquisition shifts in T2 Flair MR images to stress test AI segmentation networks Christian Posselt Mehmet Yigit Avci Mehmet Yigitsoy Patrick Schünke Christoph Kolbitsch Tobias Schäffter Stefanie Remmele OOD 18 0 0 03 Nov 2023
Towards contrast-agnostic soft segmentation of the spinal cord Sandrine Bédard E. Karthik C. Tsagkas E. Pravatà C. Granziera Andrew C. Smith K. A. Weber Julien Cohen-Adad 21 12 0 23 Oct 2023
MedSyn: Text-guided Anatomy-aware Synthesis of High-Fidelity 3D CT Images Yanwu Xu Li Sun Wei Peng Shyam Visweswaran Kayhan Batmanghelich MedIm DiffM 45 19 0 05 Oct 2023
Image-level supervision and self-training for transformer-based cross-modality tumor segmentation Malo de Boisredon Eugene Vorontsov W. Le Samuel Kadoury MedIm ViT 27 0 0 17 Sep 2023
A2V: A Semi-Supervised Domain Adaptation Framework for Brain Vessel Segmentation via Two-Phase Training Angiography-to-Venography Translation Francesco Galati Daniele Falcetta Rosa Cortese Barbara Casolla F. Prados Ninon Burgos Maria A. Zuluaga 23 3 0 12 Sep 2023
Comprehensive analysis of synthetic learning applied to neonatal brain MRI segmentation R. Valabregue F. Girka A. Pron F. Rousseau G. Auzias 34 6 0 11 Sep 2023
FastSurfer-HypVINN: Automated sub-segmentation of the hypothalamus and adjacent structures on high-resolutional brain MRI Santiago Estrada David Kügler Emad Bahrami Pengda Xu Dilshad Mousa M. Breteler N. Aziz M. Reuter 12 8 0 24 Aug 2023
A survey on deep learning in medical image registration: new technologies, uncertainty, evaluation metrics, and beyond Junyu Chen Yihao Liu Shuwen Wei Zhangxing Bian Shalini Subramanian A. Carass Jerry L. Prince Yong Du OOD 42 36 0 28 Jul 2023
AnyStar: Domain randomized universal star-convex 3D instance segmentation Neel Dey S. M. Abulnaga Benjamin Billot Esra Abaci Turk P. E. Grant Adrian V. Dalca Polina Golland MedIm 31 10 0 13 Jul 2023
Matching in the Wild: Learning Anatomical Embeddings for Multi-Modality Images Xiaoyu Bai Fan Bai Xiaofei Huo J. Ge Tony C. W. Mok ... Le Lu D. Jin X. Ye Jingjing Lu K. Yan MedIm 11 1 0 07 Jul 2023
Domain-Aware Few-Shot Learning for Optical Coherence Tomography Noise Reduction Deborah Pereg OOD 34 2 0 13 Jun 2023
Domain-agnostic segmentation of thalamic nuclei from joint structural and diffusion MRI Henry F. J. Tregidgo Sonja Soskic Mark Olchanyi Juri Althonayan Benjamin Billot ... A. Yendiki Daniel C. Alexander Martina Bocchetta J. Rohrer Juan Eugenio Iglesias MedIm 14 4 0 05 May 2023
Weakly Supervised Intracranial Hemorrhage Segmentation using Head-Wise Gradient-Infused Self-Attention Maps from a Swin Transformer in Categorical Learning Amir Rasoulian Soorena Salari Yiming Xiao 11 8 0 11 Apr 2023
CHeart: A Conditional Spatio-Temporal Generative Model for Cardiac Anatomy Mengyun Qiao Shuo Wang Huaqi Qiu A. de Marvao D. O’Regan Daniel Rueckert Wenjia Bai MedIm 26 14 0 30 Jan 2023
Anatomy-aware and acquisition-agnostic joint registration with SynthMorph Malte Hoffmann Andrew Hoopes Douglas N. Greve Bruce Fischl Adrian V. Dalca MedIm 40 15 0 26 Jan 2023
One Model to Unite Them All: Personalized Federated Learning of Multi-Contrast MRI Synthesis Onat Dalmaz Muhammad Usama Mirza Gokberk Elmas Muzaffer Özbey S. Dar Emir Ceyani Salman Avestimehr Tolga cCukur MedIm 28 39 0 13 Jul 2022
Enhancing MR Image Segmentation with Realistic Adversarial Data Augmentation C. L. P. Chen C. Qin C. Ouyang Zeju Li Shuo Wang Huaqi Qiu Liang Chen G. Tarroni Wenjia Bai Daniel Rueckert GAN MedIm 56 40 0 07 Aug 2021