Generalised Dice overlap as a deep learning loss function for highly unbalanced segmentations

11 July 2017

Carole H Sudre

Wenqi Li

Tom Kamiel Magda Vercauteren

Sébastien Ourselin

M. Jorge Cardoso

SSeg

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Papers citing "Generalised Dice overlap as a deep learning loss function for highly unbalanced segmentations"

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Morpheus: A Deep Learning Framework For Pixel-Level Analysis of Astronomical Image Data R. Hausen B. Robertson 27 67 0 26 Jun 2019
Automatic Segmentation of Vestibular Schwannoma from T2-Weighted MRI by Deep Spatial Attention with Hardness-Weighted Loss Guotai Wang J. Shapey Wenqi Li R. Dorent A. Demitriadis Sotirios Bisdas I. Paddick R. Bradford Sebastien Ourselin Tom Kamiel Magda Vercauteren 15 69 0 10 Jun 2019
Association of genomic subtypes of lower-grade gliomas with shape features automatically extracted by a deep learning algorithm Mateusz Buda Ashirbani Saha Maciej A. Mazurowski 60 265 0 09 Jun 2019
Generative Model-Based Ischemic Stroke Lesion Segmentation Tao Song DiffM MedIm 13 9 0 06 Jun 2019
Segmentation of MRI head anatomy using deep volumetric networks and multiple spatial priors Lukas Hirsch Yu Huang Lucas C. Parra MedIm 27 7 0 24 May 2019
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Gaze-in-wild: A dataset for studying eye and head coordination in everyday activities Rakshit Kothari Zhizhuo Yang Christopher Kanan Reynold J. Bailey J. Pelz Gabriel J. Diaz 17 101 0 09 May 2019
SEMEDA: Enhancing Segmentation Precision with Semantic Edge Aware Loss Yifu Chen Arnaud Dapogny Matthieu Cord SSeg 24 24 0 06 May 2019
Automated Segmentation of Pulmonary Lobes using Coordination-Guided Deep Neural Networks Wenjia Wang Junxuan Chen Jie Zhao Ying Chi Xuansong Xie Li Zhang Xiansheng Hua 16 25 0 19 Apr 2019
DefectNET: multi-class fault detection on highly-imbalanced datasets Nantheera Anantrasirichai David Bull 32 20 0 01 Apr 2019
ResUNet-a: a deep learning framework for semantic segmentation of remotely sensed data F. Diakogiannis F. Waldner P. Caccetta Chen Wu SSeg 26 1,282 0 01 Apr 2019
Deep Learning for Automated Medical Image Analysis Wentao Zhu MedIm 14 3 0 12 Mar 2019
Machine Learning on Biomedical Images: Interactive Learning, Transfer Learning, Class Imbalance, and Beyond N. Khan Nabila Abraham L. Guan 24 15 0 13 Feb 2019
Automated brain extraction of multi-sequence MRI using artificial neural networks Fabian Isensee Marianne Schell I. Tursunova G. Brugnara D. Bonekamp ... S. Heiland Wolfgang Wick Martin Bendszus Klaus Hermann Maier-Hein Philipp Kickingereder 22 479 0 31 Jan 2019
Soft labeling by Distilling Anatomical knowledge for Improved MS Lesion Segmentation Eytan Kats Jacob Goldberger H. Greenspan 22 46 0 26 Jan 2019
Deep Convolutional Encoder-Decoders with Aggregated Multi-Resolution Skip Connections for Skin Lesion Segmentation Ahmed H. Shahin K. Amer M. A. Alattar SSeg MedIm 14 27 0 26 Jan 2019
PSACNN: Pulse Sequence Adaptive Fast Whole Brain Segmentation Amod Jog Andrew Hoopes Douglas N. Greve Koen van Leemput Bruce Fischl OOD 15 35 0 17 Jan 2019
Cascaded V-Net using ROI masks for brain tumor segmentation Adrià Casamitjana Hugo J. Kuijf Bjoern H. Menze M. Reyes Verónica Vilaplana 22 196 0 30 Dec 2018
Leishmaniasis Parasite Segmentation and Classification using Deep Learning Jun Wan Albert Aparicio Sergio Escalera Francisco J. Perales López J. Kittler Daniel López-Codina 26 14 0 30 Dec 2018
Monte-Carlo Sampling applied to Multiple Instance Learning for Histological Image Classification Marc Combalia João Paulo Papa 25 81 0 30 Dec 2018
Boundary loss for highly unbalanced segmentation H. Kervadec Jihene Bouchtiba Christian Desrosiers Eric Granger Jose Dolz Ismail Ben Ayed 13 475 0 17 Dec 2018
Segmentation of Head and Neck Organs at Risk Using CNN with Batch Dice Loss O. Kodym M. Spanel A. Herout 21 27 0 06 Dec 2018
CT organ segmentation using GPU data augmentation, unsupervised labels and IOU loss Blaine Rister Darvin Yi K. Shivakumar Tomomi W. Nobashi D. Rubin OOD 8 11 0 27 Nov 2018
Multi-Task Generative Adversarial Network for Handling Imbalanced Clinical Data Mina Rezaei Haojin Yang Christoph Meinel MedIm AI4CE GAN 19 11 0 22 Nov 2018
Acute and sub-acute stroke lesion segmentation from multimodal MRI Albert Clérigues Sergi Valverde J. Bernal J. Freixenet A. Oliver Xavier Llado 35 6 0 31 Oct 2018
Hierarchical multi-class segmentation of glioma images using networks with multi-level activation function Xiaobin Hu Hongwei Bran Li Yu Zhao Chao Dong Bjoern H. Menze Marie Piraud 34 19 0 22 Oct 2018
A Novel Focal Tversky loss function with improved Attention U-Net for lesion segmentation Nabila Abraham N. Khan SSeg MedIm 39 693 0 18 Oct 2018
Bottleneck Supervised U-Net for Pixel-wise Liver and Tumor Segmentation Song Li Geoffrey Tso SSeg 14 17 0 16 Oct 2018
InfiNet: Fully Convolutional Networks for Infant Brain MRI Segmentation Shubham Kumar Sailesh Conjeti Abhijit Guha Roy Christian Wachinger Nassir Navab 14 15 0 11 Oct 2018
Conditional Generative Refinement Adversarial Networks for Unbalanced Medical Image Semantic Segmentation Mina Rezaei Haojin Yang Christoph Meinel GAN SSeg MedIm 22 21 0 09 Oct 2018
nnU-Net: Self-adapting Framework for U-Net-Based Medical Image Segmentation Fabian Isensee Jens Petersen André Klein David Zimmerer Paul F. Jaeger ... Jakob Wasserthal Gregor Koehler T. Norajitra Sebastian J. Wirkert Klaus H. Maier-Hein SSeg 35 774 0 27 Sep 2018
No New-Net Fabian Isensee Philipp Kickingereder Wolfgang Wick Martin Bendszus Klaus H. Maier-Hein SSeg 37 395 0 27 Sep 2018
3D Segmentation with Exponential Logarithmic Loss for Highly Unbalanced Object Sizes Ken C. L. Wong Mehdi Moradi Hui Tang T. Syeda-Mahmood 3DV SSeg 19 190 0 31 Aug 2018
AnatomyNet: Deep Learning for Fast and Fully Automated Whole-volume Segmentation of Head and Neck Anatomy Wentao Zhu Yufang Huang Liang Zeng Xuming Chen Yong Liu Zhen Qian Nan Du Wei Fan Xiaohui Xie SSeg 3DPC 13 435 0 15 Aug 2018
Spinal Cord Gray Matter-White Matter Segmentation on Magnetic Resonance AMIRA Images with MD-GRU Antal Huck-Horváth C. Tsagkas Simon Andermatt Simon Pezold K. Parmar Philippe C. Cattin MedIm 6 13 0 07 Aug 2018
Ensemble of Multi-sized FCNs to Improve White Matter Lesion Segmentation Zhewei Wang Charles D. Smith Jundong Liu 24 11 0 24 Jul 2018
Weakly-Supervised Convolutional Neural Networks for Multimodal Image Registration Yipeng Hu Marc Modat Eli Gibson Wenqi Li N. Ghavami ... M. Emberton Sébastien Ourselin J. A. Noble D. Barratt Tom Kamiel Magda Vercauteren 60 381 0 09 Jul 2018
Automatic segmentation of the spinal cord and intramedullary multiple sclerosis lesions with convolutional neural networks C. Gros B. Leener A. Badji J. Maranzano Dominique Eden ... J. Doyon T. Shepherd Erik Charlson S. Narayanan Julien Cohen-Adad 33 215 0 16 May 2018
A volumetric deep Convolutional Neural Network for simulation of mock dark matter halo catalogues P. Berger G. Stein 13 38 0 11 May 2018
Combo Loss: Handling Input and Output Imbalance in Multi-Organ Segmentation Saeid Asgari Taghanaki Yefeng Zheng S. Kevin Zhou Bogdan Georgescu Puneet Sharma Daguang Xu Dorin Comaniciu Ghassan Hamarneh 18 330 0 08 May 2018
Asymmetric Loss Functions and Deep Densely Connected Networks for Highly Imbalanced Medical Image Segmentation: Application to Multiple Sclerosis Lesion Detection Seyed Raein Hashemi Seyed Sadegh Mohseni Salehi Deniz Erdogmus S. Prabhu Simon K. Warfield Ali Gholipour MedIm 20 164 0 28 Mar 2018