Generalised Dice overlap as a deep learning loss function for highly unbalanced segmentations

11 July 2017

Carole H Sudre

Wenqi Li

Tom Kamiel Magda Vercauteren

Sébastien Ourselin

M. Jorge Cardoso

SSeg

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Papers citing "Generalised Dice overlap as a deep learning loss function for highly unbalanced segmentations"

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A review: Deep learning for medical image segmentation using multi-modality fusion Tongxue Zhou S. Ruan S. Canu 24 504 0 22 Apr 2020
Relational Modeling for Robust and Efficient Pulmonary Lobe Segmentation in CT Scans Weiyi Xie Colin Jacobs Jean-Paul Charbonnier Bram van Ginneken 31 86 0 16 Apr 2020
An Evaluation of DNN Architectures for Page Segmentation of Historical Newspapers Bernhard Liebl M. Burghardt SSeg 21 11 0 15 Apr 2020
Res-CR-Net, a residual network with a novel architecture optimized for the semantic segmentation of microscopy images H. Abdallah Asiri G. Liyanaarachchi Maranda Saigh Samantha Silvers S. Arslanturk D. Taatjes L. Larsson B. Jena D. Gatti SSeg 14 9 0 14 Apr 2020
A Comparison of Deep Learning Convolution Neural Networks for Liver Segmentation in Radial Turbo Spin Echo Images L. Umapathy M. Keerthivasan J. Galons W. Unger Diego R. Martin M. Altbach A. Bilgin MedIm 9 2 0 13 Apr 2020
Finding the Optimal Vocabulary Size for Neural Machine Translation Thamme Gowda Jonathan May 14 3 0 05 Apr 2020
Attention-Guided Version of 2D UNet for Automatic Brain Tumor Segmentation Mehrdad Noori Ali Bahri K. Mohammadi 3DV 27 93 0 04 Apr 2020
Kidney segmentation using 3D U-Net localized with Expectation Maximization Omid Bazgir K. Barck R. Carano R. Weimer Luke Xie MedIm 6 4 0 20 Mar 2020
Vox2Vox: 3D-GAN for Brain Tumour Segmentation M. Cirillo David Abramian Anders Eklund 29 111 0 19 Mar 2020
clDice -- A Novel Topology-Preserving Loss Function for Tubular Structure Segmentation Suprosanna Shit Johannes C. Paetzold Anjany Sekuboyina Ivan Ezhov Alexander Unger A. Zhylka J. Pluim Ulrich Bauer Bjoern H. Menze 24 288 0 16 Mar 2020
Recurrent convolutional neural networks for mandible segmentation from computed tomography Bingjiang Qiu Jiapan Guo J. Kraeima H. Glas R. Borra M. Witjes P. V. van Ooijen MedIm 27 10 0 13 Mar 2020
On the Road with 16 Neurons: Mental Imagery with Bio-inspired Deep Neural Networks Alice Plebe M. Lio 17 2 0 09 Mar 2020
Fully-automated Body Composition Analysis in Routine CT Imaging Using 3D Semantic Segmentation Convolutional Neural Networks Sven Koitka Lennard Kroll E. Malamutmann A. Oezcelik F. Nensa 14 102 0 25 Feb 2020
Technical report: Kidney tumor segmentation using a 2D U-Net followed by a statistical post-processing filter I. Paolucci 3DV SSeg 13 0 0 25 Feb 2020
Reinforced active learning for image segmentation Arantxa Casanova Pedro H. O. Pinheiro Negar Rostamzadeh C. Pal 21 108 0 16 Feb 2020
Efficient Scene Text Detection with Textual Attention Tower Liang Zhang Yufei Liu Hang Xiao Lu Yang Guangming Zhu Syed Afaq Ali Shah Bennamoun Peiyi Shen 19 7 0 30 Jan 2020
Breast mass segmentation based on ultrasonic entropy maps and attention gated U-Net Michal Byra Piotr Jarosik K. Dobruch-Sobczak Z. Klimonda H. Piotrzkowska-Wróblewska J. Litniewski A. Nowicki 20 8 0 27 Jan 2020
FakeLocator: Robust Localization of GAN-Based Face Manipulations Yihao Huang Felix Juefei Xu Jianwen Li Yang Liu G. Pu AAML 27 68 0 27 Jan 2020
Segmentation of Retinal Low-Cost Optical Coherence Tomography Images using Deep Learning Timo Kepp H. Sudkamp C. V. D. Burchard Hendrik Schenke P. Koch G. Hüttmann J. Roider M. Heinrich Heinz Handels 6 11 0 23 Jan 2020
Hippocampus Segmentation on Epilepsy and Alzheimer's Disease Studies with Multiple Convolutional Neural Networks Diedre Carmo Bruna Silva C. Yasuda Letícia Rittner R. Lotufo 25 45 0 14 Jan 2020
Convolutional Neural Networks based Focal Loss for Class Imbalance Problem: A Case Study of Canine Red Blood Cells Morphology Classification Kitsuchart Pasupa Supawit Vatathanavaro Suchat Tungjitnob 13 59 0 10 Jan 2020
On-the-fly Prediction of Protein Hydration Densities and Free Energies using Deep Learning A. Ghanbarpour Amr H. Mahmoud M. Lill 3DH AI4CE 21 4 0 07 Jan 2020
Multi-lane Detection Using Instance Segmentation and Attentive Voting D. Chang Vinjohn V. Chirakkal Shubham Goswami Munawar Hasan Taek-Hoon Jung Jinkeon Kang S. Kee Dongkyu Lee Ajit Pratap Singh 29 18 0 01 Jan 2020
Real-time Segmentation and Facial Skin Tones Grading Ling Luo Dingyu Xue Xinglong Feng Yichun Yu Peng Wang CVBM 3DH 21 0 0 30 Dec 2019
Learn to Segment Retinal Lesions and Beyond Qijie Wei Xirong Li Weihong Yu Xiao Zhang Yongpeng Zhang ... Bin Mo Di Gong N. Chen Dayong Ding You-xin Chen MedIm 24 47 0 25 Dec 2019
SegTHOR: Segmentation of Thoracic Organs at Risk in CT images Zoé Lambert Caroline Petitjean B. Dubray S. Ruan OOD 28 3 0 12 Dec 2019
UNet++: Redesigning Skip Connections to Exploit Multiscale Features in Image Segmentation Zongwei Zhou M. R. Siddiquee Nima Tajbakhsh Jianming Liang SSeg 57 2,575 0 11 Dec 2019
Knee Cartilage Segmentation Using Diffusion-Weighted MRI A. Duarte Chaitra V. Hegde Aakash Kaku S. Mohan J. Raya MedIm 17 1 0 04 Dec 2019
Confidence Calibration and Predictive Uncertainty Estimation for Deep Medical Image Segmentation Alireza Mehrtash W. Wells C. Tempany Purang Abolmaesumi Tina Kapur OOD FedML UQCV 24 265 0 29 Nov 2019
Revisiting Deep Architectures for Head Motion Prediction in 360° Videos Miguel Fabián Romero Rondón L. Sassatelli Ramon Aparicio Pardo F. Precioso 14 2 0 26 Nov 2019
A method for detecting text of arbitrary shapes in natural scenes that improves text spotting Qitong Wang Y. Zheng Margrit Betke 33 3 0 16 Nov 2019
DARTS: DenseUnet-based Automatic Rapid Tool for brain Segmentation Aakash Kaku Chaitra V. Hegde Jeffrey R. Huang Sohae Chung X. Wang Matthew Young A. Radmanesh Yvonne W. Lui N. Razavian 16 20 0 13 Nov 2019
Dice Loss for Data-imbalanced NLP Tasks Xiaoya Li Xiaofei Sun Yuxian Meng Junjun Liang Fei Wu Jiwei Li 50 567 0 07 Nov 2019
Optimization with soft Dice can lead to a volumetric bias J. Bertels D. Robben Dirk Vandermeulen P. Suetens 24 23 0 06 Nov 2019
Optimizing the Dice Score and Jaccard Index for Medical Image Segmentation: Theory & Practice J. Bertels Tom Eelbode Maxim Berman Dirk Vandermeulen F. Maes R. Bisschops Matthew Blaschko 21 253 0 05 Nov 2019
LapNet : Automatic Balanced Loss and Optimal Assignment for Real-Time Dense Object Detection Florian Chabot Q. C. Pham Mohamed Chaouch ObjD 30 8 0 04 Nov 2019
Eye Semantic Segmentation with a Lightweight Model V. Huynh Soohyung Kim Gueesang Lee Hyung-Jeong Yang VLM 3DV 31 15 0 04 Nov 2019
Localization of Fetal Head in Ultrasound Images by Multiscale View and Deep Neural Networks Zahra Sobhaninia Ali Emami N. Karimi S. Samavi 17 29 0 03 Nov 2019
Modified U-Net (mU-Net) with Incorporation of Object-Dependent High Level Features for Improved Liver and Liver-Tumor Segmentation in CT Images Hyunseok Seo Charles Huang M. Bassenne Ruoxiu Xiao Lei Xing 11 277 0 31 Oct 2019
Segmenting Ships in Satellite Imagery With Squeeze and Excitation U-Net R. Venkatesh Anand Metha SSeg 21 4 0 27 Oct 2019
Dense Dilated Network with Probability Regularized Walk for Vessel Detection Lei Mou Li Chen Jun Cheng Zaiwang Gu Yitian Zhao Jiang-Dong Liu MedIm 26 114 0 26 Oct 2019
U-Time: A Fully Convolutional Network for Time Series Segmentation Applied to Sleep Staging Mathias Perslev M. Jensen S. Darkner P. Jennum Christian Igel AI4TS 25 243 0 24 Oct 2019
J Regularization Improves Imbalanced Multiclass Segmentation F. Guerrero-Peña Pedro Diamel Marrero Fernández Paul T. Tarr Ing Ren Tsang E. Meyerowitz Alexandre Cunha 23 30 0 22 Oct 2019
Organ At Risk Segmentation with Multiple Modality Kuan-Lun Tseng Winston H. Hsu Chun Wu Ya-Fang Shih Fan-Yun Sun MedIm 17 0 0 17 Oct 2019
AdvSPADE: Realistic Unrestricted Attacks for Semantic Segmentation Guangyu Shen Chengzhi Mao Junfeng Yang Baishakhi Ray GAN 12 12 0 06 Oct 2019
Flood Detection On Low Cost Orbital Hardware Gonzalo Mateo-García Silviu Vlad Oprea Lewis Smith J. Veitch-Michaelis G. Schumann Y. Gal A. G. Baydin D. Backes 26 8 0 04 Oct 2019
A Topological Loss Function for Deep-Learning based Image Segmentation using Persistent Homology J. Clough Nicholas Byrne Ilkay Oksuz Zhenzhong Lan Julia A. Schnabel A. King 36 218 0 04 Oct 2019