Generalised Dice overlap as a deep learning loss function for highly unbalanced segmentations

11 July 2017

Carole H Sudre

Wenqi Li

Tom Kamiel Magda Vercauteren

Sébastien Ourselin

M. Jorge Cardoso

SSeg

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Papers citing "Generalised Dice overlap as a deep learning loss function for highly unbalanced segmentations"

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Lung Segmentation in Chest X-rays with Res-CR-Net H. Abdulah B. Huber Sinan Lal H. Abdallah H. Soltanian-Zadeh D. Gatti MedIm SSeg 11 2 0 14 Nov 2020
Decomposing Normal and Abnormal Features of Medical Images for Content-based Image Retrieval Kazuma Kobayashi Ryuichiro Hataya Y. Kurose Tatsuya Harada Ryuji Hamamoto MedIm 13 15 0 12 Nov 2020
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ForestNet: Classifying Drivers of Deforestation in Indonesia using Deep Learning on Satellite Imagery Jeremy Irvin Hao Sheng Neel Ramachandran Sonja Johnson-Yu Sharon Zhou Kyle T. Story Rose Rustowicz Cooper W. Elsworth K. Austin A. Ng 20 41 0 11 Nov 2020
MAGNeto: An Efficient Deep Learning Method for the Extractive Tags Summarization Problem H. Phung A. Vu Tung D. Nguyen Lam Thanh Do Giang Nam Ngo Trung Thanh Tran Hà Nội ViT 17 0 0 09 Nov 2020
Generalized Wasserstein Dice Score, Distributionally Robust Deep Learning, and Ranger for brain tumor segmentation: BraTS 2020 challenge Lucas Fidon Sebastien Ourselin Tom Kamiel Magda Vercauteren OOD MedIm 24 41 0 03 Nov 2020
An automatic multi-tissue human fetal brain segmentation benchmark using the Fetal Tissue Annotation Dataset K. Payette Priscille de Dumast Hamza Kebiri Ivan Ezhov Johannes C. Paetzold ... G. Natalucci T. Karayannis Bjoern H. Menze Meritxell Bach Cuadra Andras Jakab 12 108 0 29 Oct 2020
Optimization for Medical Image Segmentation: Theory and Practice when evaluating with Dice Score or Jaccard Index Tom Eelbode J. Bertels Maxim Berman Dirk Vandermeulen F. Maes R. Bisschops Matthew B. Blaschko 33 255 0 26 Oct 2020
Matthews Correlation Coefficient Loss for Deep Convolutional Networks: Application to Skin Lesion Segmentation Kumar Abhishek Ghassan Hamarneh 18 31 0 26 Oct 2020
What is the best data augmentation for 3D brain tumor segmentation? M. Cirillo David Abramian Anders Eklund 30 4 0 26 Oct 2020
Tissue characterization based on the analysis on i3DUS data for diagnosis support in neurosurgery Moucheng Xu 13 0 0 24 Oct 2020
Drink Bleach or Do What Now? Covid-HeRA: A Study of Risk-Informed Health Decision Making in the Presence of COVID-19 Misinformation Arkin Dharawat Ismini Lourentzou Alex Morales ChengXiang Zhai 33 17 0 17 Oct 2020
Multi-class segmentation under severe class imbalance: A case study in roof damage assessment J. Boin Nat Roth Jigar Doshi Pablo Llueca Nicolas Borensztein SSeg 12 7 0 14 Oct 2020
Medical Image Segmentation Using Deep Learning: A Survey Risheng Wang Tao Lei Xiaogang Du Yong Wan Hongying Meng A. Nandi SSeg OOD 35 544 0 28 Sep 2020
Classification and understanding of cloud structures via satellite images with EfficientUNet Tashin Ahmed Noor Hossain Nuri Sabab 18 37 0 27 Sep 2020
Brain Tumor Segmentation using 3D-CNNs with Uncertainty Estimation Laura Mora Ballestar Verónica Vilaplana 32 8 0 24 Sep 2020
Learning Non-Unique Segmentation with Reward-Penalty Dice Loss Jiabo He S. Erfani S. Wijewickrema S. O'Leary K. Ramamohanarao 26 3 0 23 Sep 2020
Multi-scale Attention U-Net (MsAUNet): A Modified U-Net Architecture for Scene Segmentation Soham Chattopadhyay Hritam Basak SSeg 25 14 0 15 Sep 2020
Bridging the Gap: Unifying the Training and Evaluation of Neural Network Binary Classifiers Nathan Tsoi Kate Candon Deyuan Li Yofti Milkessa Marynel Vázquez AAML 6 2 0 02 Sep 2020
Hybrid Deep Neural Networks to Infer State Models of Black-Box Systems Mohammad Jafar Mashhadi Hadi Hemmati BDL MLAU 19 4 0 26 Aug 2020
Disentangled Representations for Domain-generalized Cardiac Segmentation Xiao Liu Spyridon Thermos A. Chartsias Alison Q. OÑeil Sotirios A. Tsaftaris OOD 16 22 0 26 Aug 2020
Improving Emergency Response during Hurricane Season using Computer Vision Marc Bosch Christian Conroy Ben Ortiz P. Bogden 8 6 0 17 Aug 2020
Confidence-guided Lesion Mask-based Simultaneous Synthesis of Anatomic and Molecular MR Images in Patients with Post-treatment Malignant Gliomas Pengfei Guo Puyang Wang R. Yasarla Jinyuan Zhou Vishal M. Patel Shanshan Jiang MedIm 27 1 0 06 Aug 2020
Comparative study of deep learning methods for the automatic segmentation of lung, lesion and lesion type in CT scans of COVID-19 patients Sofie Tilborghs Ine Dirks Lucas Fidon S. Willems Tom Eelbode ... D. Robben D. Smeets F. Maes Jef Vandemeulebroucke P. Suetens OOD 40 28 0 29 Jul 2020
Universal Loss Reweighting to Balance Lesion Size Inequality in 3D Medical Image Segmentation B. Shirokikh A. Shevtsov Anvar Kurmukov A. Dalechina Egor Krivov V. Kostjuchenko A. Golanov Mikhail Belyaev 22 20 0 20 Jul 2020
EllSeg: An Ellipse Segmentation Framework for Robust Gaze Tracking Rakshit Kothari A. Chaudhary Reynold J. Bailey J. Pelz Gabriel J. Diaz 16 69 0 19 Jul 2020
Deep Learning Based Brain Tumor Segmentation: A Survey Zhihua Liu Lei Tong Zheheng Jiang Long Chen Feixiang Zhou Qianni Zhang Xiangrong Zhang Ling Li Huiyu Zhou 3DV 24 228 0 18 Jul 2020
Learn distributed GAN with Temporary Discriminators Hui Qu Yikai Zhang Qi Chang Zhennan Yan Chao Chen Dimitris N. Metaxas FedML 21 16 0 17 Jul 2020
Deep Small Bowel Segmentation with Cylindrical Topological Constraints Seung Yeon Shin Sungwon Lee Daniel C. Elton J. Gulley Ronald M. Summers 21 24 0 16 Jul 2020
Automatic Ischemic Stroke Lesion Segmentation from Computed Tomography Perfusion Images by Image Synthesis and Attention-Based Deep Neural Networks Guotai Wang Tao Song Q. Dong Mei Cui Ning Huang Shaoting Zhang DiffM MedIm 30 73 0 07 Jul 2020
Globally Optimal Segmentation of Mutually Interacting Surfaces using Deep Learning Hui Xie Zhe Pan Leixin Zhou F. Zaman Danny Chen J. Jonas Yaxing Wang Xiaodong Wu OOD 14 3 0 02 Jul 2020
PGD-UNet: A Position-Guided Deformable Network for Simultaneous Segmentation of Organs and Tumors Ziqiang Li Hong Pan Yaping Zhu •. A. K. Qin 12 20 0 02 Jul 2020
A survey of loss functions for semantic segmentation Shruti Jadon SSeg 39 823 0 26 Jun 2020
Lesion Mask-based Simultaneous Synthesis of Anatomic and MolecularMR Images using a GAN Pengfei Guo Puyang Wang Jinyuan Zhou Vishal M. Patel Shanshan Jiang MedIm 33 10 0 26 Jun 2020
Collaborative Boundary-aware Context Encoding Networks for Error Map Prediction Zhenxi Zhang Chunna Tian Jiyang Li Zhusi Zhong Zhicheng Jiao Xinbo Gao MedIm 22 9 0 25 Jun 2020
Deep Residual 3D U-Net for Joint Segmentation and Texture Classification of Nodules in Lung Alexandr G. Rassadin MedIm 39 8 0 25 Jun 2020
LAMP: Large Deep Nets with Automated Model Parallelism for Image Segmentation Wentao Zhu Can Zhao Wenqi Li H. Roth Ziyue Xu Daguang Xu 3DV 32 18 0 22 Jun 2020
Segmentation task for fashion and apparel Hassler Castro Mariana Ramirez 8 4 0 14 Jun 2020
A Deep Learning-Based Method for Automatic Segmentation of Proximal Femur from Quantitative Computed Tomography Images Chen Zhao Joyce H. Keyak Jinshan Tang T. Kaneko S. Khosla ... Michael J. Serou Chaoyang Zhang Hui Shen Hong-Wen Deng Weihua Zhou 6 8 0 09 Jun 2020
ComboNet: Combined 2D & 3D Architecture for Aorta Segmentation Orhan Akal Zhigang Peng G. Hermosillo 3DV 3DPC 24 4 0 09 Jun 2020
RIT-Eyes: Rendering of near-eye images for eye-tracking applications Nitinraj Nair Rakshit Kothari A. Chaudhary Zhizhuo Yang Gabriel J. Diaz J. Pelz Reynold J. Bailey 3DH 25 19 0 05 Jun 2020
A comparative study of 2D image segmentation algorithms for traumatic brain lesions using CT data from the ProTECTIII multicenter clinical trial Shruti Jadon Owen P. Leary I. Pan Tyler Harder D. Wright Lisa H. Merck D. Merck 38 27 0 01 Jun 2020
Synthetic Learning: Learn From Distributed Asynchronized Discriminator GAN Without Sharing Medical Image Data Qi Chang Hui Qu Yikai Zhang M. Sabuncu Chao Chen Tong Zhang Dimitris N. Metaxas MedIm 34 78 0 29 May 2020
Segmentation Loss Odyssey Jun Ma SSeg VLM MedIm 16 39 0 27 May 2020
Learning Global and Local Features of Normal Brain Anatomy for Unsupervised Abnormality Detection Kazuma Kobayashi Ryuichiro Hataya Y. Kurose Amina Bolatkan M. Miyake Hirokazu Watanabe Masamichi Takahashi J. Itami Tatsuya Harada Ryuji Hamamoto MedIm 6 1 0 26 May 2020
AutoML Segmentation for 3D Medical Image Data: Contribution to the MSD Challenge 2018 Oliver Rippel Leon Weninger Dorit Merhof 17 2 0 20 May 2020
Tropical and Extratropical Cyclone Detection Using Deep Learning Christina Kumler-Bonfanti J. Stewart D. Hall M. Govett 19 37 0 18 May 2020
Effective Data Fusion with Generalized Vegetation Index: Evidence from Land Cover Segmentation in Agriculture Hao Sheng Xiao Chen Jingyi Su Ram Rajagopal Andrew Y. Ng 31 31 0 07 May 2020
Polygonal Building Segmentation by Frame Field Learning N. Girard Dmitriy Smirnov Justin Solomon Y. Tarabalka 11 26 0 30 Apr 2020
An Auto-Encoder Strategy for Adaptive Image Segmentation Evan M. Yu Juan Eugenio Iglesias Adrian Dalca M. Sabuncu 31 13 0 29 Apr 2020