Title
Multimodal Survival Modeling in the Age of Foundation Models Steven Song Morgan Borjigin-Wang Irene Madejski Robert L. Grossman 88 0 0 12 May 2025
Revisiting the MIMIC-IV Benchmark: Experiments Using Language Models for Electronic Health Records Jesus Lovon Thouria Ben-Haddi Jules Di Scala José G. Moreno L. Tamine 137 3 0 29 Apr 2025
ConTextual: Improving Clinical Text Summarization in LLMs with Context-preserving Token Filtering and Knowledge Graphs Fahmida Liza Piya Rahmatollah Beheshti 286 0 0 23 Apr 2025
Forecasting from Clinical Textual Time Series: Adaptations of the Encoder and Decoder Language Model Families Shahriar Noroozizadeh Sayantan Kumar Jeremy C. Weiss AI4TS 76 1 0 14 Apr 2025
GLiNER-BioMed: A Suite of Efficient Models for Open Biomedical Named Entity Recognition Anthony Yazdani Ihor Stepanov Douglas Teodoro VLM AI4CE 107 0 0 01 Apr 2025
Temporal Relation Extraction in Clinical Texts: A Span-based Graph Transformer Approach Rochana Chaturvedi Peyman Baghershahi Sourav Medya Barbara Di Eugenio 118 0 0 23 Mar 2025
CURIE: Evaluating LLMs On Multitask Scientific Long Context Understanding and Reasoning Hao Cui Zahra Shamsi Gowoon Cheon Xuejian Ma Shutong Li ... Eun-Ah Kim M. Brenner Viren Jain Sameera Ponda Subhashini Venugopalan ELM LRM 138 4 0 14 Mar 2025
CORRECT: Context- and Reference-Augmented Reasoning and Prompting for Fact-Checking Delvin Ce Zhang Dongwon Lee HILM LRM 163 0 0 09 Feb 2025
Comply: Learning Sentences with Complex Weights inspired by Fruit Fly Olfaction Alexei Figueroa Justus Westerhoff Golzar Atefi Dennis Fast B. Winter Felix Alexader Gers Alexander Loser Wolfang Nejdl 185 0 0 03 Feb 2025
Knowledge-Infused Prompting: Assessing and Advancing Clinical Text Data Generation with Large Language Models Ran Xu Hejie Cui Yue Yu Xuan Kan Wenqi Shi Yuchen Zhuang Wei Jin Joyce C. Ho Carl Yang 160 17 0 28 Jan 2025
BIOSCAN-5M: A Multimodal Dataset for Insect Biodiversity Zahra Gharaee Scott C. Lowe ZeMing Gong Pablo Millán Arias Nicholas Pellegrino ... Lila Kari Dirk Steinke Graham W. Taylor Paul Fieguth Angel X. Chang 130 11 0 28 Jan 2025
A Survey of Large Language Models for Healthcare: from Data, Technology, and Applications to Accountability and Ethics Kai He Rui Mao Qika Lin Yucheng Ruan Xiang Lan Mengling Feng Min Zhang LM&MA AILaw 226 175 0 28 Jan 2025
Enhancing Biomedical Relation Extraction with Directionality Po-Ting Lai Chih-Hsuan Wei Shubo Tian Robert Leaman Zhiyong Lu 183 0 0 23 Jan 2025
Neuradicon: operational representation learning of neuroimaging reports Henry Watkins Robert J. Gray Adam Julius Y. Mah W. H. Pinaya ... Jorge M. Cardoso Sebastien Ourselin Geraint Rees Rolf Jaeger P. Nachev MedIm 485 3 0 20 Jan 2025
Natural Language-Assisted Multi-modal Medication Recommendation Jie Tan Yu Rong Kangfei Zhao Tian Bian Tingyang Xu Junzhou Huang Hong Cheng Helen Meng 124 2 0 13 Jan 2025
MedCT: A Clinical Terminology Graph for Generative AI Applications in Healthcare Ye Chen Dongdong Huang Haoyun Xu Cong Fu Lin Sheng Qingli Zhou Yuqiang Shen Kai Wang VLM MedIm 110 1 0 11 Jan 2025
BiomedCLIP: a multimodal biomedical foundation model pretrained from fifteen million scientific image-text pairs Sheng Zhang Yanbo Xu Naoto Usuyama Hanwen Xu J. Bagga ... Carlo Bifulco M. Lungren Tristan Naumann Sheng Wang Hoifung Poon LM&MA MedIm 235 233 0 10 Jan 2025
Hengqin-RA-v1: Advanced Large Language Model for Diagnosis and Treatment of Rheumatoid Arthritis with Dataset based Traditional Chinese Medicine Yishen Liu Shengda Luo Zishao Zhong Tongtong Wu Jing Zhang Peiyao Ou Yong Liang Liang Liu Hudan Pan LM&MA 144 1 0 05 Jan 2025
INSIGHTBUDDY-AI: Medication Extraction and Entity Linking using Large Language Models and Ensemble Learning Pablo Romero Lifeng Han Goran Nenadic LM&MA 84 1 0 31 Dec 2024
A Comprehensive Survey of Large Language Models and Multimodal Large Language Models in Medicine Hanguang Xiao Feizhong Zhou Xianglong Liu Tianqi Liu Zhipeng Li Xin Liu Xiaoxuan Huang AILaw LM&MA LRM 137 29 0 31 Dec 2024
TriG-NER: Triplet-Grid Framework for Discontinuous Named Entity Recognition R. Cabral Soyeon Caren Han Areej Alhassan Riza Batista-Navarro Goran Nenadic Josiah Poon 98 0 0 04 Nov 2024
Enabling Scalable Evaluation of Bias Patterns in Medical LLMs Hamed Fayyaz Raphael Poulain Rahmatollah Beheshti 95 2 0 18 Oct 2024
Structure-Enhanced Protein Instruction Tuning: Towards General-Purpose Protein Understanding with LLMs Wei Wu Chao Wang L. Chen Mingze Yin Yiheng Zhu Kun Fu Jieping Ye Hui Xiong Zheng Wang 132 1 0 04 Oct 2024
DiMB-RE: Mining the Scientific Literature for Diet-Microbiome Associations Gibong Hong Veronica Hindle Nadine M. Veasley Hannah D. Holscher Halil Kilicoglu AI4CE 108 1 0 29 Sep 2024
Towards understanding evolution of science through language model series Junjie Dong Zhuoqi Lyu Qing Ke AI4TS 168 0 0 15 Sep 2024
Evaluating Pre-trained Convolutional Neural Networks and Foundation Models as Feature Extractors for Content-based Medical Image Retrieval Amirreza Mahbod Nematollah Saeidi Sepideh Hatamikia Ramona Woitek VLM MedIm 110 3 0 14 Sep 2024
LUK: Empowering Log Understanding with Expert Knowledge from Large Language Models Lipeng Ma Weidong Yang Sihang Jiang Ben Fei Mingjie Zhou Shuhao Li Bo Xu Bo Xu Yanghua Xiao 141 0 0 03 Sep 2024
EEG-Language Modeling for Pathology Detection Sam Gijsen Kerstin Ritter 147 4 0 02 Sep 2024
RoVRM: A Robust Visual Reward Model Optimized via Auxiliary Textual Preference Data Chenglong Wang Yang Gan Yifu Huo Yongyu Mu Murun Yang ... Chunliang Zhang Tongran Liu Quan Du Di Yang Jingbo Zhu VLM 153 6 0 22 Aug 2024
ProteinGPT: Multimodal LLM for Protein Property Prediction and Structure Understanding Yijia Xiao Edward Sun Yiqiao Jin Qifan Wang Wei Wang 121 16 0 21 Aug 2024
GOProteinGNN: Leveraging Protein Knowledge Graphs for Protein Representation Learning Dan Kalifa Uriel Singer Kira Radinsky 143 1 0 31 Jul 2024
DALL-M: Context-Aware Clinical Data Augmentation with LLMs Chihcheng Hsieh Catarina Moreira Isabel Blanco Nobre Sandra Costa Sousa Chun Ouyang M. Brereton Joaquim A. Jorge Jacinto C. Nascimento 107 0 0 11 Jul 2024
AgentClinic: a multimodal agent benchmark to evaluate AI in simulated clinical environments Samuel Schmidgall Rojin Ziaei Carl Harris Eduardo Reis Jeffrey Jopling Michael Moor 199 55 0 13 May 2024
ProtChatGPT: Towards Understanding Proteins with Large Language Models Chao Wang Hehe Fan Ruijie Quan Yi Yang 97 16 0 15 Feb 2024
Large Language Models as Topological Structure Enhancers for Text-Attributed Graphs Shengyin Sun Yuxiang Ren Chen Ma Xuecang Zhang 230 24 0 24 Nov 2023
UMLS-KGI-BERT: Data-Centric Knowledge Integration in Transformers for Biomedical Entity Recognition Aidan Mannion Thierry Chevalier D. Schwab Lorraine Goeuriot MedIm 104 4 0 20 Jul 2023
Results of the seventh edition of the BioASQ Challenge A. Nentidis K. Bougiatiotis Anastasia Krithara George Giannakopoulos 89 62 0 16 Jun 2020
Adversarial Training for Large Neural Language Models Xiaodong Liu Hao Cheng Pengcheng He Weizhu Chen Yu Wang Hoifung Poon Jianfeng Gao AAML 83 185 0 20 Apr 2020
Exploring the Limits of Transfer Learning with a Unified Text-to-Text Transformer Colin Raffel Noam M. Shazeer Adam Roberts Katherine Lee Sharan Narang Michael Matena Yanqi Zhou Wei Li Peter J. Liu AIMat 530 20,386 0 23 Oct 2019
PubMedQA: A Dataset for Biomedical Research Question Answering Qiao Jin Bhuwan Dhingra Zhengping Liu William W. Cohen Xinghua Lu 413 916 0 13 Sep 2019
RoBERTa: A Robustly Optimized BERT Pretraining Approach Yinhan Liu Myle Ott Naman Goyal Jingfei Du Mandar Joshi Danqi Chen Omer Levy M. Lewis Luke Zettlemoyer Veselin Stoyanov AIMat 711 24,597 0 26 Jul 2019
Transfer Learning in Biomedical Natural Language Processing: An Evaluation of BERT and ELMo on Ten Benchmarking Datasets Yifan Peng Shankai Yan Zhiyong Lu LM&MA AI4MH 105 846 0 13 Jun 2019
Matching the Blanks: Distributional Similarity for Relation Learning Livio Baldini Soares Nicholas FitzGerald Jeffrey Ling Tom Kwiatkowski 74 774 0 07 Jun 2019
SuperGLUE: A Stickier Benchmark for General-Purpose Language Understanding Systems Alex Jinpeng Wang Yada Pruksachatkun Nikita Nangia Amanpreet Singh Julian Michael Felix Hill Omer Levy Samuel R. Bowman ELM 294 2,327 0 02 May 2019
Publicly Available Clinical BERT Embeddings Emily Alsentzer John R. Murphy Willie Boag W. Weng Di Jin Tristan Naumann Matthew B. A. McDermott AI4MH 208 1,991 0 06 Apr 2019
Document-Level $N$ -ary Relation Extraction with Multiscale Representation Learning Robin Jia Cliff Wong Hoifung Poon NAI 63 145 0 04 Apr 2019
SciBERT: A Pretrained Language Model for Scientific Text Iz Beltagy Kyle Lo Arman Cohan 185 2,992 0 26 Mar 2019
Enhancing Clinical Concept Extraction with Contextual Embeddings Yuqi Si Jingqi Wang Hua Xu Kirk Roberts AI4MH 86 292 0 22 Feb 2019
BioBERT: a pre-trained biomedical language representation model for biomedical text mining Jinhyuk Lee Wonjin Yoon Sungdong Kim Donghyeon Kim Sunkyu Kim Chan Ho So Jaewoo Kang OOD 195 5,688 0 25 Jan 2019
ML-Net: multi-label classification of biomedical texts with deep neural networks Jingcheng Du Qingyu Chen Yifan Peng Yang Xiang Cui Tao Zhiyong Lu 124 139 0 13 Nov 2018