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Multi-domain Clinical Natural Language Processing with MedCAT: the
  Medical Concept Annotation Toolkit

Multi-domain Clinical Natural Language Processing with MedCAT: the Medical Concept Annotation Toolkit

2 October 2020
Z. Kraljevic
Thomas Searle
Anthony Shek
Lukasz Roguski
Kawsar Noor
D. Bean
Aurelie Mascio
Leilei Zhu
A. Folarin
A. Roberts
R. Bendayan
M. Richardson
Robert Stewart
A. Shah
W. K. Wong
Zina M. Ibrahim
J. Teo
Richard J. B. Dobson
    AI4MH
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Papers citing "Multi-domain Clinical Natural Language Processing with MedCAT: the Medical Concept Annotation Toolkit"

42 / 42 papers shown
Title
Integration of Large Language Models and Traditional Deep Learning for Social Determinants of Health Prediction
Integration of Large Language Models and Traditional Deep Learning for Social Determinants of Health Prediction
Paul Landes
Jimeng Sun
Adam Cross
31
0
0
06 May 2025
Developing and Evaluating an AI-Assisted Prediction Model for Unplanned Intensive Care Admissions following Elective Neurosurgery using Natural Language Processing within an Electronic Healthcare Record System
Julia Ive
Olatomiwa Olukoya
Jonathan P. Funnell
James Booker
Sze H M Lam
Ugan Reddy
Kawsar Noor
Richard J. B. Dobson
Astri M.V. Luoma
Hani J Marcus
43
0
0
13 Mar 2025
Large Language Models for Medical Forecasting -- Foresight 2
Large Language Models for Medical Forecasting -- Foresight 2
Z. Kraljevic
Joshua Au Yeung
D. Bean
James T. Teo
Richard J. B. Dobson
LM&MA
74
0
0
14 Dec 2024
Automatic detection of diseases in Spanish clinical notes combining
  medical language models and ontologies
Automatic detection of diseases in Spanish clinical notes combining medical language models and ontologies
Leon-Paul Schaub Torre
Pelayo Quiros
Helena Garcia Mieres
66
0
0
04 Dec 2024
Generative Language Models Potential for Requirement Engineering
  Applications: Insights into Current Strengths and Limitations
Generative Language Models Potential for Requirement Engineering Applications: Insights into Current Strengths and Limitations
Summra Saleem
M. Asim
L. V. Elst
Andreas Dengel
70
0
0
01 Dec 2024
Detección Automática de Patologías en Notas Clínicas en
  Español Combinando Modelos de Lenguaje y Ontologías Médicos
Detección Automática de Patologías en Notas Clínicas en Español Combinando Modelos de Lenguaje y Ontologías Médicos
Léon-Paul Schaub Torre
Pelayo Quirós
Helena García Mieres
27
0
0
01 Oct 2024
Facilitating phenotyping from clinical texts: the medkit library
Facilitating phenotyping from clinical texts: the medkit library
A. Neuraz
Ghislain Vaillant
Camila Arias
Olivier Birot
Kim-Tam Huynh
...
Alice Rogier
Nicolas Garcelon
Ivan Lerner
Bastien Rance
Adrien Coulet
LM&MA
16
1
0
30 Aug 2024
Improving Extraction of Clinical Event Contextual Properties from
  Electronic Health Records: A Comparative Study
Improving Extraction of Clinical Event Contextual Properties from Electronic Health Records: A Comparative Study
Shubham Agarwal
Thomas Searle
M. Ratas
Anthony Shek
James Teo
Richard J. B. Dobson
29
0
0
30 Aug 2024
I-SIRch: AI-Powered Concept Annotation Tool For Equitable Extraction And
  Analysis Of Safety Insights From Maternity Investigations
I-SIRch: AI-Powered Concept Annotation Tool For Equitable Extraction And Analysis Of Safety Insights From Maternity Investigations
Mohit Kumar Singh
Georgina Cosma
Patrick Waterson
Jonathan Back
G. T. Jun
29
2
0
08 Jun 2024
Biomedical Entity Linking for Dutch: Fine-tuning a Self-alignment BERT
  Model on an Automatically Generated Wikipedia Corpus
Biomedical Entity Linking for Dutch: Fine-tuning a Self-alignment BERT Model on an Automatically Generated Wikipedia Corpus
Fons Hartendorp
T. Seinen
E. V. Mulligen
Suzan Verberne
18
0
0
20 May 2024
ROCOv2: Radiology Objects in COntext Version 2, an Updated Multimodal
  Image Dataset
ROCOv2: Radiology Objects in COntext Version 2, an Updated Multimodal Image Dataset
Johannes Ruckert
Louise Bloch
Raphael Brüngel
Ahmad Idrissi-Yaghir
Henning Schafer
...
A. G. S. D. Herrera
Henning Müller
Peter A. Horn
F. Nensa
Christoph M. Friedrich
37
26
0
16 May 2024
Bespoke Large Language Models for Digital Triage Assistance in Mental
  Health Care
Bespoke Large Language Models for Digital Triage Assistance in Mental Health Care
Niall Taylor
Andrey Kormilitzin
Isabelle Lorge
A. Nevado-Holgado
Dan W Joyce
LM&MA
AI4MH
27
0
0
28 Mar 2024
A Data-Centric Approach To Generate Faithful and High Quality Patient
  Summaries with Large Language Models
A Data-Centric Approach To Generate Faithful and High Quality Patient Summaries with Large Language Models
S. Hegselmann
Zejiang Shen
Florian Gierse
Monica Agrawal
David Sontag
Xiaoyi Jiang
HILM
VLM
24
6
0
23 Feb 2024
HunFlair2 in a cross-corpus evaluation of biomedical named entity
  recognition and normalization tools
HunFlair2 in a cross-corpus evaluation of biomedical named entity recognition and normalization tools
Mario Sanger
Samuele Garda
Xing David Wang
Leon Weber-Genzel
Pia Droop
Benedikt Fuchs
Alan Akbik
Ulf Leser
27
6
0
19 Feb 2024
Exploring the Consistency, Quality and Challenges in Manual and
  Automated Coding of Free-text Diagnoses from Hospital Outpatient Letters
Exploring the Consistency, Quality and Challenges in Manual and Automated Coding of Free-text Diagnoses from Hospital Outpatient Letters
Warren Del-Pinto
G. Demetriou
M. Jani
Rikesh Patel
Leanne Gray
Alexander Bulcock
Niels Peek
A. Kanter
William G Dixon
Goran Nenadic
11
1
0
17 Nov 2023
Validating transformers for redaction of text from electronic health
  records in real-world healthcare
Validating transformers for redaction of text from electronic health records in real-world healthcare
Z. Kraljevic
Anthony Shek
Joshua Au Yeung
E. Sheldon
Mohammad Al-Agil
...
Xi Bai
Kawsar Noor
Anoop D. Shah
Richard J. B. Dobson
James T. Teo
MedIm
11
3
0
05 Oct 2023
Development of a Knowledge Graph Embeddings Model for Pain
Development of a Knowledge Graph Embeddings Model for Pain
Jaya Chaturvedi
Tao Wang
S. Velupillai
Robert Stewart
A. Roberts
19
0
0
17 Aug 2023
MedMine: Examining Pre-trained Language Models on Medication Mining
MedMine: Examining Pre-trained Language Models on Medication Mining
Haifa Alrdahi
Lifeng Han
Hendrik vSuvalov
Goran Nenadic
21
4
0
07 Aug 2023
The Potential and Pitfalls of using a Large Language Model such as
  ChatGPT or GPT-4 as a Clinical Assistant
The Potential and Pitfalls of using a Large Language Model such as ChatGPT or GPT-4 as a Clinical Assistant
Jingqing Zhang
Kai Sun
A. Jagadeesh
Mahta Ghahfarokhi
Deepa Gupta
Ashok Gupta
Vibhor Gupta
Yike Guo
LM&MA
AI4MH
ELM
24
11
0
16 Jul 2023
Automatic Coding at Scale: Design and Deployment of a Nationwide System
  for Normalizing Referrals in the Chilean Public Healthcare System
Automatic Coding at Scale: Design and Deployment of a Nationwide System for Normalizing Referrals in the Chilean Public Healthcare System
F. Villena
Matías Rojas
Felipe Arias
Jorge Pacheco
Paulina Vera
J. Dunstan
14
1
0
09 Jul 2023
An Investigation of Evaluation Metrics for Automated Medical Note
  Generation
An Investigation of Evaluation Metrics for Automated Medical Note Generation
Asma Ben Abacha
Wen-wai Yim
George Michalopoulos
Thomas Lin
17
22
0
27 May 2023
Identifying Mentions of Pain in Mental Health Records Text: A Natural
  Language Processing Approach
Identifying Mentions of Pain in Mental Health Records Text: A Natural Language Processing Approach
Jaya Chaturvedi
S. Velupillai
Robert Stewart
A. Roberts
12
5
0
03 Apr 2023
Progress Note Understanding -- Assessment and Plan Reasoning: Overview
  of the 2022 N2C2 Track 3 Shared Task
Progress Note Understanding -- Assessment and Plan Reasoning: Overview of the 2022 N2C2 Track 3 Shared Task
Yanjun Gao
Dmitriy Dligach
Timothy A. Miller
M. Churpek
Özlem Uzuner
Majid Afshar
19
4
0
14 Mar 2023
Foresight -- Generative Pretrained Transformer (GPT) for Modelling of
  Patient Timelines using EHRs
Foresight -- Generative Pretrained Transformer (GPT) for Modelling of Patient Timelines using EHRs
Z. Kraljevic
D. Bean
Anthony Shek
R. Bendayan
H. Hemingway
...
Alfie Baston
Jack Ross
Esther Idowu
J. Teo
Richard J. B. Dobson
AI4TS
6
20
0
13 Dec 2022
Discharge Summary Hospital Course Summarisation of In Patient Electronic
  Health Record Text with Clinical Concept Guided Deep Pre-Trained Transformer
  Models
Discharge Summary Hospital Course Summarisation of In Patient Electronic Health Record Text with Clinical Concept Guided Deep Pre-Trained Transformer Models
Thomas Searle
Zina M. Ibrahim
J. Teo
Richard J. B. Dobson
8
29
0
14 Nov 2022
MONAI: An open-source framework for deep learning in healthcare
MONAI: An open-source framework for deep learning in healthcare
M. Jorge Cardoso
Wenqi Li
Richard Brown
Nic Ma
E. Kerfoot
...
Klaus H. Maier-Hein
S. Aylward
Prerna Dogra
Sebastien Ourselin
Andrew Feng
34
480
0
04 Nov 2022
MedJEx: A Medical Jargon Extraction Model with Wiki's Hyperlink Span and
  Contextualized Masked Language Model Score
MedJEx: A Medical Jargon Extraction Model with Wiki's Hyperlink Span and Contextualized Masked Language Model Score
Sunjae Kwon
Zonghai Yao
H. Jordan
David Levy
Brian Corner
Hong-ye Yu
17
18
0
12 Oct 2022
Medical Image Captioning via Generative Pretrained Transformers
Medical Image Captioning via Generative Pretrained Transformers
Alexander Selivanov
Oleg Y. Rogov
Daniil Chesakov
Artem Shelmanov
Irina Fedulova
Dmitry V. Dylov
MedIm
49
55
0
28 Sep 2022
Negation detection in Dutch clinical texts: an evaluation of rule-based
  and machine learning methods
Negation detection in Dutch clinical texts: an evaluation of rule-based and machine learning methods
Bram van Es
L. Reteig
Sander C Tan
M. Schraagen
Myrthe M. Hemker
S. R. Arends
Miguel Rios
S. Haitjema
14
12
0
01 Sep 2022
Review of Natural Language Processing in Pharmacology
Review of Natural Language Processing in Pharmacology
D. Trajanov
Vangel Trajkovski
Makedonka Dimitrieva
Jovana Dobreva
Milos Jovanovik
Matej Klemen
Alevs vZagar
Marko Robnik-vSikonja
LM&MA
21
7
0
22 Aug 2022
Effective Few-Shot Named Entity Linking by Meta-Learning
Effective Few-Shot Named Entity Linking by Meta-Learning
Xiuxing Li
Zhenyu Li
Zhengyan Zhang
Ning Liu
Haitao Yuan
Wei Zhang
Zhiyuan Liu
Jianyong Wang
OffRL
28
10
0
12 Jul 2022
Ontology-Driven and Weakly Supervised Rare Disease Identification from
  Clinical Notes
Ontology-Driven and Weakly Supervised Rare Disease Identification from Clinical Notes
Hang Dong
Víctor Suárez-Paniagua
Huayu Zhang
Minhong Wang
Arlene Casey
E. Davidson
Jiaoyan Chen
Beatrice Alex
W. Whiteley
Honghan Wu
9
19
0
11 May 2022
Predicting Clinical Intent from Free Text Electronic Health Records
Predicting Clinical Intent from Free Text Electronic Health Records
Kawsar Noor
Katherine Smith
Julia Bennett
Jade OConnell
Jessica Fisk
...
Teresa Xu
Simon Knight
L. Romão
Richard J. B. Dobson
W. K. Wong
11
1
0
25 Mar 2022
Automated Clinical Coding: What, Why, and Where We Are?
Automated Clinical Coding: What, Why, and Where We Are?
Hang Dong
Matús Falis
W. Whiteley
Beatrice Alex
Joshua Matterson
Shaoxiong Ji
Jiaoyan Chen
Honghan Wu
9
66
0
21 Mar 2022
A Unified Review of Deep Learning for Automated Medical Coding
A Unified Review of Deep Learning for Automated Medical Coding
Shaoxiong Ji
Wei Sun
Xiaobo Li
Hang Dong
Ara Taalas
Yijia Zhang
Honghan Wu
Esa Pitkänen
Pekka Marttinen
AI4TS
MedIm
21
27
0
08 Jan 2022
MedGPT: Medical Concept Prediction from Clinical Narratives
MedGPT: Medical Concept Prediction from Clinical Narratives
Z. Kraljevic
Anthony Shek
D. Bean
R. Bendayan
J. Teo
Richard J. B. Dobson
LM&MA
AI4TS
MedIm
18
39
0
07 Jul 2021
RATCHET: Medical Transformer for Chest X-ray Diagnosis and Reporting
RATCHET: Medical Transformer for Chest X-ray Diagnosis and Reporting
Benjamin Hou
Georgios Kaissis
Ronald M. Summers
Bernhard Kainz
ViT
LM&MA
MedIm
19
50
0
05 Jul 2021
Estimating Redundancy in Clinical Text
Estimating Redundancy in Clinical Text
Thomas Searle
Zina M. Ibrahim
J. Teo
Richard J. B. Dobson
9
20
0
25 May 2021
Does BERT Pretrained on Clinical Notes Reveal Sensitive Data?
Does BERT Pretrained on Clinical Notes Reveal Sensitive Data?
Eric P. Lehman
Sarthak Jain
Karl Pichotta
Yoav Goldberg
Byron C. Wallace
OOD
MIACV
22
117
0
15 Apr 2021
What's in a Summary? Laying the Groundwork for Advances in
  Hospital-Course Summarization
What's in a Summary? Laying the Groundwork for Advances in Hospital-Course Summarization
Griffin Adams
Emily Alsentzer
Mert Ketenci
Jason Zucker
Noémie Elhadad
35
46
0
12 Apr 2021
Neural Entity Linking: A Survey of Models Based on Deep Learning
Neural Entity Linking: A Survey of Models Based on Deep Learning
Ozge Sevgili
Artem Shelmanov
Mikhail V. Arkhipov
Alexander Panchenko
Christian Biemann
VLM
3DV
AI4TS
8
118
0
31 May 2020
Deep Representation Learning of Electronic Health Records to Unlock
  Patient Stratification at Scale
Deep Representation Learning of Electronic Health Records to Unlock Patient Stratification at Scale
Isotta Landi
B. Glicksberg
Hao-Chih Lee
S. Cherng
Giulia Landi
M. Danieletto
J. Dudley
Cesare Furlanello
Riccardo Miotto
32
148
0
14 Mar 2020
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