Genomic Language Models: Opportunities and Challenges

Genomic Language Models: Opportunities and Challenges

16 July 2024

Gonzalo Benegas

Jianan Canal Li

Papers citing "Genomic Language Models: Opportunities and Challenges"

12 / 12 papers shown

Title
Gene42: Long-Range Genomic Foundation Model With Dense Attention Kirill Vishniakov Boulbaba Ben Amor Engin Tekin Nancy A. ElNaker Karthik Viswanathan ... Tiago Magalhaes Natalia Vassilieva Dwarikanath Mahapatra Marco Pimentel and Shadab Khan 3DV 34 0 0 20 Mar 2025
EAIRA: Establishing a Methodology for Evaluating AI Models as Scientific Research Assistants Franck Cappello Sandeep Madireddy Robert Underwood N. Getty Nicholas Chia ... M. Rafique Eliu A. Huerta B. Li Ian Foster Rick L. Stevens 66 1 0 27 Feb 2025
Can linguists better understand DNA? Wang Liang 79 1 0 20 Jan 2025
Diverse capability and scaling of diffusion and auto-regressive models when learning abstract rules Binxu Wang Jiaqi Shang Haim Sompolinsky DiffM 28 1 0 12 Nov 2024
Training Compute-Optimal Protein Language Models Xingyi Cheng Bo Chen Pan Li Jing Gong Jie Tang Le Song 68 12 0 04 Nov 2024
A 5' UTR Language Model for Decoding Untranslated Regions of mRNA and Function Predictions Yanyi Chu Dan Yu Yupeng Li Kaixuan Huang Yue Shen Le Cong Jason Zhang Mengdi Wang 85 45 0 05 Oct 2023
Sparks of Artificial General Intelligence: Early experiments with GPT-4 Sébastien Bubeck Varun Chandrasekaran Ronen Eldan J. Gehrke Eric Horvitz ... Scott M. Lundberg Harsha Nori Hamid Palangi Marco Tulio Ribeiro Yi Zhang ELM AI4MH AI4CE ALM 203 2,232 0 22 Mar 2023
Deduplicating Training Data Makes Language Models Better Katherine Lee Daphne Ippolito A. Nystrom Chiyuan Zhang Douglas Eck Chris Callison-Burch Nicholas Carlini SyDa 237 588 0 14 Jul 2021
The Pile: An 800GB Dataset of Diverse Text for Language Modeling Leo Gao Stella Biderman Sid Black Laurence Golding Travis Hoppe ... Horace He Anish Thite Noa Nabeshima Shawn Presser Connor Leahy AIMat 245 1,977 0 31 Dec 2020
A Survey on Neural Network Interpretability Yu Zhang Peter Tiño A. Leonardis K. Tang FaML XAI 129 654 0 28 Dec 2020
Big Bird: Transformers for Longer Sequences Manzil Zaheer Guru Guruganesh Kumar Avinava Dubey Joshua Ainslie Chris Alberti ... Philip Pham Anirudh Ravula Qifan Wang Li Yang Amr Ahmed VLM 249 1,982 0 28 Jul 2020
ImageNet Large Scale Visual Recognition Challenge Olga Russakovsky Jia Deng Hao Su J. Krause S. Satheesh ... A. Karpathy A. Khosla Michael S. Bernstein Alexander C. Berg Li Fei-Fei VLM ObjD 279 39,083 0 01 Sep 2014