Efficient Multi-Scale 3D CNN with Fully Connected CRF for Accurate Brain Lesion Segmentation

18 March 2016

Konstantinos Kamnitsas

Papers citing "Efficient Multi-Scale 3D CNN with Fully Connected CRF for Accurate Brain Lesion Segmentation"

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Title
Infinite Brain MR Images: PGGAN-based Data Augmentation for Tumor Detection Changhee Han L. Rundo Ryosuke Araki Yujiro Furukawa G. Mauri Hideki Nakayama Hideaki Hayashi MedIm 8 91 0 29 Mar 2019
Deep Radiomics for Brain Tumor Detection and Classification from Multi-Sequence MRI Subhashis Banerjee Sushmita Mitra F. Masulli S. Rovetta MedIm 17 41 0 21 Mar 2019
Deep Learning Enables Automatic Detection and Segmentation of Brain Metastases on Multi-Sequence MRI E. Grøvik Darvin Yi Michael Iv E. Tong D. Rubin Greg Zaharchuk MedIm 8 207 0 18 Mar 2019
Unsupervised Medical Image Translation Using Cycle-MedGAN Karim Armanious Chenming Jiang Sherif Abdulatif Thomas Kustner S. Gatidis Bin Yang MedIm 13 113 0 08 Mar 2019
CE-Net: Context Encoder Network for 2D Medical Image Segmentation Zaiwang Gu Jun Cheng Huazhu Fu Kang Zhou Huaying Hao Yitian Zhao Tianyang Zhang Shenghua Gao Jiang-Dong Liu SSeg 33 1,614 0 07 Mar 2019
Semi-Supervised Brain Lesion Segmentation with an Adapted Mean Teacher Model Wenhui Cui Yanling Liu Yuxing Li Meng-Hao Guo Yiming Li Xiuli Li Tianle Wang Xiangzhu Zeng Chuyang Ye 26 174 0 04 Mar 2019
Data augmentation using learned transformations for one-shot medical image segmentation Amy Zhao Guha Balakrishnan F. Durand John Guttag Adrian Dalca OOD MedIm 19 394 0 25 Feb 2019
Boundary-weighted Domain Adaptive Neural Network for Prostate MR Image Segmentation Qikui Zhu Bo Du Pingkun Yan 36 157 0 21 Feb 2019
Atrial Scar Quantification via Multi-scale CNN in the Graph-cuts Framework Lei Li Fuping Wu Guang Yang Lingchao Xu T. Wong R. Mohiaddin D. Firmin J. Keegan Xiahai Zhuang MedIm 14 69 0 21 Feb 2019
Accurate Automatic Segmentation of Amygdala Subnuclei and Modeling of Uncertainty via Bayesian Fully Convolutional Neural Network Yilin Liu Gengyan Zhao Brendon M. Nacewicz N. Adluru Gregory R. Kirk P. Ferrazzano Martin Styner Andrew L. Alexander 21 6 0 19 Feb 2019
Going Deep in Medical Image Analysis: Concepts, Methods, Challenges and Future Directions F. Altaf Syed Mohammed Shamsul Islam Naveed Akhtar N. Janjua OOD 29 200 0 15 Feb 2019
SAPSAM - Sparsely Annotated Pathological Sign Activation Maps - A novel approach to train Convolutional Neural Networks on lung CT scans using binary labels only M. Zusag S. Desai M. D. Paolo T. Semple Anand Shah Elsa D. Angelini 16 4 0 06 Feb 2019
Technical Considerations for Semantic Segmentation in MRI using Convolutional Neural Networks Arjun D Desai G. Gold B. Hargreaves Akshay S. Chaudhari 19 30 0 05 Feb 2019
Cross-modality (CT-MRI) prior augmented deep learning for robust lung tumor segmentation from small MR datasets Jue Jiang Yu-chi Hu N. Tyagi Pengpeng Zhang A. Rimner Joseph O. Deasy Harini Veeraraghavan 31 53 0 31 Jan 2019
Automated brain extraction of multi-sequence MRI using artificial neural networks Fabian Isensee Marianne Schell I. Tursunova G. Brugnara D. Bonekamp ... S. Heiland Wolfgang Wick Martin Bendszus Klaus Hermann Maier-Hein Philipp Kickingereder 22 479 0 31 Jan 2019
Soft labeling by Distilling Anatomical knowledge for Improved MS Lesion Segmentation Eytan Kats Jacob Goldberger H. Greenspan 15 45 0 26 Jan 2019
Multiple Sclerosis Lesion Synthesis in MRI using an encoder-decoder U-NET Mostafa Salem Sergi Valverde Mariano Cabezas D. Pareto A. Oliver J. Salvi À. Rovira Xavier Llado MedIm 22 61 0 17 Jan 2019
Brain segmentation based on multi-atlas guided 3D fully convolutional network ensembles Jiong Wu Xiaoying Tang 16 35 0 05 Jan 2019
Cascaded V-Net using ROI masks for brain tumor segmentation Adrià Casamitjana Hugo J. Kuijf Bjoern H. Menze M. Reyes Verónica Vilaplana 22 196 0 30 Dec 2018
Monte-Carlo Sampling applied to Multiple Instance Learning for Histological Image Classification Marc Combalia João Paulo Papa 25 81 0 30 Dec 2018
MMFNet: A Multi-modality MRI Fusion Network for Segmentation of Nasopharyngeal Carcinoma Huai Chen Yuxiao Qi Yong Yin TengXiang Li Xiaoqing Liu Xiuli Li G. Gong Lisheng Wang MedIm 22 70 0 25 Dec 2018
Holistic Decomposition Convolution for Effective Semantic Segmentation of 3D MR Images G. Zeng Guoyan Zheng 19 3 0 24 Dec 2018
Boundary loss for highly unbalanced segmentation H. Kervadec Jihene Bouchtiba Christian Desrosiers Eric Granger Jose Dolz Ismail Ben Ayed 13 475 0 17 Dec 2018
Accuracy, Uncertainty, and Adaptability of Automatic Myocardial ASL Segmentation using Deep CNN H. P. Do Yi Guo A. Yoon K. Nayak 18 22 0 10 Dec 2018
Deep Learning with Mixed Supervision for Brain Tumor Segmentation Pawel Mlynarski H. Delingette A. Criminisi N. Ayache 14 121 0 10 Dec 2018
Prediction of final infarct volume from native CT perfusion and treatment parameters using deep learning D. Robben A. Boers H. Marquering L. Langezaal Y. Roos ... D. Dippel C. Majoie A. van der Lugt Robin Lemmens P. Suetens 12 72 0 06 Dec 2018
SurfConv: Bridging 3D and 2D Convolution for RGBD Images Hang Chu Wei-Chiu Ma Kaustav Kundu R. Urtasun Sanja Fidler MDE 29 24 0 04 Dec 2018
Brain Tumor Segmentation using an Ensemble of 3D U-Nets and Overall Survival Prediction using Radiomic Features Xue Feng Nicholas J. Tustison C. Meyer 48 224 0 03 Dec 2018
SUSAN: Segment Unannotated image Structure using Adversarial Network Fang Liu GAN MedIm 44 56 0 03 Dec 2018
Automatic Liver Segmentation with Adversarial Loss and Convolutional Neural Network Bora Baydar Savas Ozkan G. Akar GAN MedIm 18 0 0 28 Nov 2018
GANsfer Learning: Combining labelled and unlabelled data for GAN based data augmentation Christopher Bowles R. Gunn A. Hammers Daniel Rueckert GAN MedIm 21 21 0 26 Nov 2018
An overview of deep learning in medical imaging focusing on MRI A. Lundervold A. Lundervold OOD 17 1,608 0 25 Nov 2018
IVD-Net: Intervertebral disc localization and segmentation in MRI with a multi-modal UNet Jose Dolz Christian Desrosiers Ismail Ben Ayed 28 111 0 19 Nov 2018
A Progressively-trained Scale-invariant and Boundary-aware Deep Neural Network for the Automatic 3D Segmentation of Lung Lesions Bo Zhou Randolph Crawford B. Dogdas G. Goldmacher Antong Chen 21 13 0 11 Nov 2018
An End-to-end Approach to Semantic Segmentation with 3D CNN and Posterior-CRF in Medical Images Shuai Chen Marleen de Bruijne MedIm 20 11 0 08 Nov 2018
Automatic Assessment of Full Left Ventricular Coverage in Cardiac Cine Magnetic Resonance Imaging with Fisher-Discriminative 3D CNN Le Zhang Ali Gooya Marco Pereañez B. Dong Stefan K. Piechnik M. Horowitz S. Petersen Alejandro F. Frangi 22 28 0 06 Nov 2018
Towards continual learning in medical imaging Chaitanya Baweja Ben Glocker Konstantinos Kamnitsas CLL 26 57 0 06 Nov 2018
Ischemic Stroke Lesion Segmentation in CT Perfusion Scans using Pyramid Pooling and Focal Loss S. M. Abulnaga Jonathan Rubin 29 50 0 02 Nov 2018
Towards the AlexNet Moment for Homomorphic Encryption: HCNN, theFirst Homomorphic CNN on Encrypted Data with GPUs Ahmad Al Badawi Jin Chao Jie Lin Chan Fook Mun Sim Jun Jie B. Tan Xiao Nan Khin Mi Mi Aung V. Chandrasekhar 21 64 0 02 Nov 2018
Acute and sub-acute stroke lesion segmentation from multimodal MRI Albert Clérigues Sergi Valverde J. Bernal J. Freixenet A. Oliver Xavier Llado 27 6 0 31 Oct 2018
3D MRI brain tumor segmentation using autoencoder regularization Andriy Myronenko 29 1,028 0 27 Oct 2018
A Volumetric Convolutional Neural Network for Brain Tumor Segmentation Ryan Sherman 27 4 0 27 Oct 2018
GAN Augmentation: Augmenting Training Data using Generative Adversarial Networks Christopher Bowles Liang Chen Ricardo Guerrero P. Bentley R. Gunn A. Hammers D. A. Dickie M. V. Valdés Hernández Joanna M. Wardlaw Daniel Rueckert GAN MedIm 21 422 0 25 Oct 2018
Machine Learning Algorithms for Classification of Microcirculation Images from Septic and Non-Septic Patients Perikumar Javia Lukasz Tulczyjew Michal Marcinkiewicz J. Nalepa 6 13 0 24 Oct 2018
Generative adversarial networks and adversarial methods in biomedical image analysis J. Wolterink Konstantinos Kamnitsas C. Ledig Ivana Išgum MedIm GAN 30 21 0 24 Oct 2018
AUNet: Attention-guided dense-upsampling networks for breast mass segmentation in whole mammograms Hui Sun Cheng Li Boqiang Liu Hairong Zheng David Dagan Feng Shanshan Wang 27 120 0 24 Oct 2018
Brain Tumor Image Retrieval via Multitask Learning Maxim Pisov Gleb Makarchuk V. Kostjuchenko A. Dalechina A. Golanov Mikhail Belyaev 6 7 0 22 Oct 2018
Automatic Brain Tumor Segmentation using Convolutional Neural Networks with Test-Time Augmentation Guotai Wang Wenqi Li Sebastien Ourselin Tom Kamiel Magda Vercauteren 16 151 0 18 Oct 2018
Dense Multi-path U-Net for Ischemic Stroke Lesion Segmentation in Multiple Image Modalities Jose Dolz Ismail Ben Ayed Christian Desrosiers 15 100 0 16 Oct 2018
A Novel Domain Adaptation Framework for Medical Image Segmentation A. Gholami Shashank Subramanian Varun Shenoy Naveen Himthani Xiangyu Yue Sicheng Zhao Peter H. Jin George Biros Kurt Keutzer MedIm 32 50 0 11 Oct 2018