Efficient Multi-Scale 3D CNN with Fully Connected CRF for Accurate Brain Lesion Segmentation

18 March 2016

Konstantinos Kamnitsas

Papers citing "Efficient Multi-Scale 3D CNN with Fully Connected CRF for Accurate Brain Lesion Segmentation"

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PULASki: Learning inter-rater variability using statistical distances to improve probabilistic segmentation S. Chatterjee Franziska Gaidzik Alessandro Sciarra Hendrik Mattern G. Janiga Oliver Speck Andreas Nürnberger S. Pathiraja 52 0 0 25 Dec 2023
FM-G-CAM: A Holistic Approach for Explainable AI in Computer Vision Ravidu Suien Rammuni Silva Jordan J. Bird FAtt 13 1 0 10 Dec 2023
MRI Scan Synthesis Methods based on Clustering and Pix2Pix Giulia Baldini Melanie Schmidt Charlotte Zäske Liliana L. Caldeira 19 2 0 08 Dec 2023
Brain-ID: Learning Contrast-agnostic Anatomical Representations for Brain Imaging Peirong Liu Oula Puonti Xiaoling Hu Daniel C. Alexander Juan Eugenio Iglesias MedIm OOD 42 7 0 28 Nov 2023
Glioblastoma Tumor Segmentation using an Ensemble of Vision Transformers Huafeng Liu Benjamin Dowdell Todd Engelder Zarah Pulmano Nicolas Osa Arko Barman MedIm 22 1 0 09 Nov 2023
A Multi-Scale Spatial Transformer U-Net for Simultaneously Automatic Reorientation and Segmentation of 3D Nuclear Cardiac Images Yangfan Ni Duo Zhang Gege Ma Lijun Lu Zhongke Huang Wentao Zhu MedIm 23 2 0 16 Oct 2023
Synthesizing Missing MRI Sequences from Available Modalities using Generative Adversarial Networks in BraTS Dataset Ibrahim Ethem Hamamci MedIm 37 1 0 11 Oct 2023
BeSt-LeS: Benchmarking Stroke Lesion Segmentation using Deep Supervision Prantik Deb Lalith Bharadwaj Baru Kamalaker Dadi Bapi Raju 22 4 0 10 Oct 2023
IP-UNet: Intensity Projection UNet Architecture for 3D Medical Volume Segmentation Nyothiri Aung Mohand Tahar Kechadi Liming Chen Sahraoui Dhelim 15 4 0 24 Aug 2023
FastSurfer-HypVINN: Automated sub-segmentation of the hypothalamus and adjacent structures on high-resolutional brain MRI Santiago Estrada David Kügler Emad Bahrami Pengda Xu Dilshad Mousa M. Breteler N. Aziz M. Reuter 17 8 0 24 Aug 2023
InverseSR: 3D Brain MRI Super-Resolution Using a Latent Diffusion Model Jueqi Wang J. Levman W. H. Pinaya Petru-Daniel Tudosiu M. Jorge Cardoso Razvan Marinescu DiffM MedIm 27 21 0 23 Aug 2023
Tumor-Centered Patching for Enhanced Medical Image Segmentation Mutyyba Asghar A. R. Shahid Akhtar Jamil K. Aftab S. Enam 19 1 0 23 Aug 2023
Volumetric Fast Fourier Convolution for Detecting Ink on the Carbonized Herculaneum Papyri Fabio Quattrini Vittorio Pippi S. Cascianelli Rita Cucchiara 38 2 0 09 Aug 2023
One-shot Joint Extraction, Registration and Segmentation of Neuroimaging Data Yao Su Zhentian Qian Lei Ma Lifang He Xiangnan Kong 21 2 0 27 Jul 2023
Weakly Supervised AI for Efficient Analysis of 3D Pathology Samples Andrew H. Song Mane Williams Drew F. K. Williamson Guillaume Jaume Andrew Zhang ... R. Serafin Jonathan T. C. Liu Alexander S. Baras Anil V. Parwani Faisal Mahmood 17 4 0 27 Jul 2023
Prototype-Driven and Multi-Expert Integrated Multi-Modal MR Brain Tumor Image Segmentation Yafei Zhang Zhiyuan Li Huafeng Li Dapeng Tao 23 1 0 22 Jul 2023
A Novel SLCA-UNet Architecture for Automatic MRI Brain Tumor Segmentation S. TejashwiniP. J. Thriveni R. VenugopalK. 15 3 0 16 Jul 2023
H-DenseFormer: An Efficient Hybrid Densely Connected Transformer for Multimodal Tumor Segmentation Jun Shi Hongyu Kan Shulan Ruan Ziqi Zhu Minfan Zhao Liang Qiao Zhaohui Wang Hong An Xudong Xue ViT MedIm 18 6 0 04 Jul 2023
Modality-Agnostic Learning for Medical Image Segmentation Using Multi-modality Self-distillation Qisheng He Nicholas Summerfield Ming Dong C. Glide-Hurst 27 1 0 06 Jun 2023
Training Like a Medical Resident: Context-Prior Learning Toward Universal Medical Image Segmentation Yunhe Gao Zhuowei Li Di Liu Mu Zhou Shaoting Zhang Dimitris N. Metaxas MedIm 31 12 0 04 Jun 2023
The Brain Tumor Segmentation (BraTS) Challenge 2023: Glioma Segmentation in Sub-Saharan Africa Patient Population (BraTS-Africa) Maruf Adewole J. Rudie A. Gbadamosi O. Toyobo Confidence Raymond ... Ujjwal Baid Spyridon Bakas Farouk Dako A. Fatade U. Anazodo 20 40 0 30 May 2023
Joint Optimization of Class-Specific Training- and Test-Time Data Augmentation in Segmentation Zeju Li Konstantinos Kamnitsas Qi Dou C. Qin Ben Glocker 21 6 0 30 May 2023
Scale-aware Super-resolution Network with Dual Affinity Learning for Lesion Segmentation from Medical Images Yanwen Li Luyang Luo Huangjing Lin Pheng-Ann Heng Hao Chen SupR SSeg MedIm 28 2 0 30 May 2023
The Brain Tumor Segmentation (BraTS) Challenge 2023: Brain MR Image Synthesis for Tumor Segmentation (BraSyn) Hongwei Bran Li G. Conte Syed Muhammad Anwar Florian Kofler Ivan Ezhov ... Spyridon Bakas M. Linguraru Bjoern H. Menze Juan Eugenio Iglesias Benedikt Wiestler 62 18 0 15 May 2023
Brain Tumor Segmentation from MRI Images using Deep Learning Techniques A. Gupta M. Dixit V. Mishra Attulya Singh Atul Dayal 11 8 0 29 Apr 2023
The Rio Hortega University Hospital Glioblastoma dataset: a comprehensive collection of preoperative, early postoperative and recurrence MRI scans (RHUH-GBM) S. Cepeda S. García-García I. Arrese Francisco Herrero Trinidad Escudero T. Zamora R. Sarabia 6 11 0 27 Apr 2023
Benchmarking ChatGPT-4 on ACR Radiation Oncology In-Training (TXIT) Exam and Red Journal Gray Zone Cases: Potentials and Challenges for AI-Assisted Medical Education and Decision Making in Radiation Oncology Yixing Huang A. Gomaa S. Semrau M. Haderlein S. Lettmaier ... L. Distel Andreas Maier R. Fietkau Christoph Bert F. Putz ELM LM&MA AI4MH 40 9 0 24 Apr 2023
Segmentation of glioblastomas in early post-operative multi-modal MRI with deep neural networks Ragnhild Holden Helland Alexandros Ferles André Pedersen I. Kommers H. Ardon ... O. Solheim P. D. W. Hamer Ingerid Reinertsen R. Eijgelaar D. Bouget 26 16 0 18 Apr 2023
Brain Tumor classification and Segmentation using Deep Learning Belal Badawy Romario Sameh Samir Youssef Tarek M. Ahmed R. Ibrahim Manar Ahmed Mohamed Hassan 8 0 0 16 Apr 2023
UniverSeg: Universal Medical Image Segmentation V. Butoi Jose Javier Gonzalez Ortiz Tianyu Ma M. Sabuncu John Guttag Adrian Dalca 38 71 0 12 Apr 2023
Unsupervised Brain Tumor Segmentation with Image-based Prompts Xinru Zhang N. Ou Chenghao Liu Z. Zhuo Yao Liu Chuyang Ye VLM 24 2 0 04 Apr 2023
Medical Image Analysis using Deep Relational Learning Zhi-Hu Liu MedIm 17 0 0 28 Mar 2023
That Label's Got Style: Handling Label Style Bias for Uncertain Image Segmentation Kilian Zepf Eike Petersen J. Frellsen Aasa Feragen 13 7 0 28 Mar 2023
OCELOT: Overlapped Cell on Tissue Dataset for Histopathology Jeongun Ryu Aaron Valero Puche Jaewoong Shin Seonwook Park Biagio Brattoli ... S. Cho K. Paeng C-Y. Ock D. Yoo Sérgio Pereira 39 25 0 23 Mar 2023
Exploring contrast generalisation in deep learning-based brain MRI-to-CT synthesis Lotte Nijskens Cornelis C. D. Berg Joost Verhoeff M. Maspero OOD MedIm 39 8 0 17 Mar 2023
CT Perfusion is All We Need: 4D CNN Segmentation of Penumbra and Core in Patients With Suspected Ischemic Stroke Luca Tomasetti K. Engan Liv Jorunn Høllesli K. D. Kurz M. Khanmohammadi 28 2 0 15 Mar 2023
Reversing the Abnormal: Pseudo-Healthy Generative Networks for Anomaly Detection Cosmin I. Bercea Benedikt Wiestler Daniel Rueckert Julia A. Schnabel DiffM MedIm 23 18 0 15 Mar 2023
DeDA: Deep Directed Accumulator Hang Zhang Rongguang Wang Renjiu Hu Jinwei Zhang Jiahao Nick Li MedIm 27 4 0 15 Mar 2023
DPA-P2PNet: Deformable Proposal-aware P2PNet for Accurate Point-based Cell Detection Zhongyi Shui S. Zheng Chenglu Zhu Shichuan Zhang Xiaoxuan Yu Honglin Li Jingxiong Li Pingyi Chen L. Yang 3DPC 32 4 0 05 Mar 2023
A Gradient Boosting Approach for Training Convolutional and Deep Neural Networks S. Emami Gonzalo Martínez-Munoz 20 6 0 22 Feb 2023
Multi-organ segmentation: a progressive exploration of learning paradigms under scarce annotation Shiman Li Haoran Wang Yucong Meng Chenxi Zhang Zhijian Song 35 6 0 07 Feb 2023
Acute ischemic stroke lesion segmentation in non-contrast CT images using 3D convolutional neural networks A. Dobshik S. Verbitskiy I. Pestunov K. Sherman Yuriy Sinyavskiy A. Tulupov V. Berikov 26 6 0 17 Jan 2023
Graph Convolution Based Cross-Network Multi-Scale Feature Fusion for Deep Vessel Segmentation Gangming Zhao Kongming Liang Changzai Pan Fandong Zhang Xianpeng Wu Xinyang Hu Yizhou Yu MedIm 39 27 0 06 Jan 2023
Towards fully automated deep-learning-based brain tumor segmentation: is brain extraction still necessary? Bruno Machado Pacheco G. Cassia Danilo Silva 3DV 19 10 0 14 Dec 2022
Investigating certain choices of CNN configurations for brain lesion segmentation Masoomeh Rahimpour A. Radwan Henri Vandermeulen S. Sunaert K. Goffin M. Koole 50 1 0 02 Dec 2022
Deep representation learning: Fundamentals, Perspectives, Applications, and Open Challenges K. T. Baghaei Amirreza Payandeh Pooya Fayyazsanavi Shahram Rahimi Zhiqian Chen Somayeh Bakhtiari Ramezani FaML AI4TS 38 6 0 27 Nov 2022
Benchmarking Bayesian Deep Learning on Diabetic Retinopathy Detection Tasks Neil Band Tim G. J. Rudner Qixuan Feng Angelos Filos Zachary Nado Michael W. Dusenberry Ghassen Jerfel Dustin Tran Y. Gal OOD UQCV BDL 29 50 0 23 Nov 2022
Convolutional neural networks for medical image segmentation J. Bertels D. Robben Robin Lemmens Dirk Vandermeulen SSeg 15 2 0 17 Nov 2022
Disentangled Uncertainty and Out of Distribution Detection in Medical Generative Models Kumud Lakara Matias Valdenegro-Toro UQCV OOD 30 1 0 11 Nov 2022
Theoretical analysis and experimental validation of volume bias of soft Dice optimized segmentation maps in the context of inherent uncertainty J. Bertels D. Robben Dirk Vandermeulen P. Suetens 30 19 0 08 Nov 2022