3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation

21 June 2016

Thomas Brox

Papers citing "3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation"

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Title
Machine learning with data assimilation and uncertainty quantification for dynamical systems: a review Sibo Cheng César Quilodrán-Casas Said Ouala A. Farchi Che Liu ... Weiping Ding Yike Guo A. Carrassi Marc Bocquet Rossella Arcucci AI4CE 37 124 0 18 Mar 2023
Diff-UNet: A Diffusion Embedded Network for Volumetric Segmentation Zhaohu Xing Liang Wan Huazhu Fu Guang Yang Lei Zhu MedIm 14 49 0 18 Mar 2023
MedNeXt: Transformer-driven Scaling of ConvNets for Medical Image Segmentation Saikat Roy Gregor Koehler Constantin Ulrich Michael Baumgartner Jens Petersen Fabian Isensee Paul F. Jaeger Klaus Maier-Hein ViT MedIm 45 138 0 17 Mar 2023
GDDS: Pulmonary Bronchioles Segmentation with Group Deep Dense Supervision Mingyue Zhao Shang Zhao Quan Quan L. Fan Xiaolan Qiu Shiyuan Liu S.Kevin Zhou 33 7 0 16 Mar 2023
Dual skip connections in U-Net, ResUnet and U-Net3+ for remote extraction of buildings B. Neupane Jagannath Aryal Abbas Rajabifard SSeg 3DPC 26 2 0 16 Mar 2023
Learning Homeomorphic Image Registration via Conformal-Invariant Hyperelastic Regularisation Jing Zou Noémie Debroux Lihao Liu Jing Qin Carola-Bibiane Schönlieb Angelica I Aviles-Rivero MedIm 28 2 0 14 Mar 2023
SuperMask: Generating High-resolution object masks from multi-view, unaligned low-resolution MRIs Han Gu Hongyu Hè R. Colglazier Jordan Axelrod Robert French Maciej A. Mazurowski 23 0 0 13 Mar 2023
Mirror U-Net: Marrying Multimodal Fission with Multi-task Learning for Semantic Segmentation in Medical Imaging Zdravko Marinov Simon Reiß D. Kersting Jens Kleesiek Rainer Stiefelhagen 38 12 0 13 Mar 2023
Multi-site, Multi-domain Airway Tree Modeling (ATM'22): A Public Benchmark for Pulmonary Airway Segmentation Minghui Zhang Yang Wu Hanxiao Zhang Yulei Qin Hao Zheng ... Raúl San José Estépar C. Espinosa Jiayuan Sun Guang-Zhong Yang Yun Gu 20 12 0 10 Mar 2023
Explainable Semantic Medical Image Segmentation with Style Weiqun Dai Siyu Liu Craig B. Engstrom Shekhar S. Chandra MedIm 73 0 0 10 Mar 2023
Retinal Image Segmentation with Small Datasets Nchongmaje Ndipenoch A. Miron Zidong Wang Yongmin Li 16 4 0 09 Mar 2023
Evaluating the Fairness of Deep Learning Uncertainty Estimates in Medical Image Analysis Raghav Mehta Changjian Shui Tal Arbel 26 12 0 06 Mar 2023
MiShape: 3D Shape Modelling of Mitochondria in Microscopy Abhinanda R. Punnakkal Suyog Jadhav Alexander Horsch Krishna Agarwal Dilip K. Prasad 42 0 0 02 Mar 2023
Validated respiratory drug deposition predictions from 2D and 3D medical images with statistical shape models and convolutional neural networks Josh Williams Haavard Ahlqvist Alexander Cunningham Andrew Kirby I. Katz J. Fleming J. Conway Steve Cunningham A. Ozel U. Wolfram 16 4 0 02 Mar 2023
Meta-information-aware Dual-path Transformer for Differential Diagnosis of Multi-type Pancreatic Lesions in Multi-phase CT Bo Zhou Yingda Xia Jiawen Yao Le Lu Jingren Zhou Chi Liu James S. Duncan Ling Zhang MedIm 15 1 0 02 Mar 2023
Spatial Layout Consistency for 3D Semantic Segmentation M. Jameela Gunho Sohn 3DPC 19 1 0 02 Mar 2023
Geometric Visual Similarity Learning in 3D Medical Image Self-supervised Pre-training Yuting He Guanyu Yang Rongjun Ge Yang Chen J. Coatrieux Boyu Wang Shuo Li SSL 26 35 0 02 Mar 2023
NSANet: Noise Seeking Attention Network M. Jameela Gunho Sohn 3DPC 24 1 0 26 Feb 2023
Stereo X-ray Tomography Zhen-zhen Shang T. Blumensath 7 6 0 26 Feb 2023
nnUNet RASPP for Retinal OCT Fluid Detection, Segmentation and Generalisation over Variations of Data Sources Nchongmaje Ndipenoch A. Miron Zidong Wang Yongmin Li 14 1 0 25 Feb 2023
Frequency Disentangled Learning for Segmentation of Midbrain Structures from Quantitative Susceptibility Mapping Data Guanghui Fu Gabriel Jimenez Sophie Loizillon Lydia Chougar Didier Dormont ... Ninon Burgos Stéphane Lehéricy Daniel Racoceanu O. Colliot the Iceberg Study Group 42 0 0 25 Feb 2023
Clinically Acceptable Segmentation of Organs at Risk in Cervical Cancer Radiation Treatment from Clinically Available Annotations Monika Grewal Dustin van Weersel H. Westerveld Peter A. N. Bosman Tanja Alderliesten 19 2 0 21 Feb 2023
LIT-Former: Linking In-plane and Through-plane Transformers for Simultaneous CT Image Denoising and Deblurring Zhihao Chen Chuang Niu Qi Gao Ge Wang Hongming Shan MedIm ViT 3DV 46 20 0 21 Feb 2023
Towards Simultaneous Segmentation of Liver Tumors and Intrahepatic Vessels via Cross-attention Mechanism Haopeng Kuang Dingkang Yang Shunli Wang Xiaoying Wang Lihua Zhang MedIm 40 11 0 20 Feb 2023
One-Pot Multi-Frame Denoising Lujia Jin Shi-Jing Zhao Lei Zhu Qian Chen Yanye Lu 18 1 0 18 Feb 2023
Do Deep Learning Models Really Outperform Traditional Approaches in Molecular Docking? Yuejiang Yu Shuqi Lu Zhifeng Gao Hang Zheng Guolin Ke 19 29 0 14 Feb 2023
ContrasInver: Ultra-Sparse Label Semi-supervised Regression for Multi-dimensional Seismic Inversion Yimin Dou Kewen Li Wenjun Lv Timing Li Hongjie Duan Yuan Xiao 35 2 0 13 Feb 2023
Detection and Segmentation of Pancreas using Morphological Snakes and Deep Convolutional Neural Networks Agapi Davradou 28 2 0 13 Feb 2023
Deep Learning in Healthcare: An In-Depth Analysis Farzan Shenavarmasouleh F. Mohammadi Khaled Rasheed H. Arabnia BDL 19 1 0 12 Feb 2023
3D Molecular Generation via Virtual Dynamics Shuqi Lu Lin Yao X. Chen Hang Zheng Di He Guolin Ke DiffM 31 7 0 12 Feb 2023
Enhancing Modality-Agnostic Representations via Meta-Learning for Brain Tumor Segmentation Aishik Konwer Xiaoling Hu Joseph Bae Xuanang Xu Chaoyu Chen Prateek Prasanna 32 16 0 08 Feb 2023
A Generalized Surface Loss for Reducing the Hausdorff Distance in Medical Imaging Segmentation A. Celaya B. Rivière David T. Fuentes MedIm 33 8 0 08 Feb 2023
SSR-2D: Semantic 3D Scene Reconstruction from 2D Images J. Huang Alexey Artemov Yujin Chen Shuaifeng Zhi Kaiyang Xu Matthias Nießner 3DV 3DPC 50 3 0 07 Feb 2023
3D Vessel Segmentation with Limited Guidance of 2D Structure-agnostic Vessel Annotations Huai Chen Xiuying Wang Lisheng Wang 3DPC 20 4 0 07 Feb 2023
Multi-organ segmentation: a progressive exploration of learning paradigms under scarce annotation Shiman Li Haoran Wang Yucong Meng Chenxi Zhang Zhijian Song 45 6 0 07 Feb 2023
Exploiting Partial Common Information Microstructure for Multi-Modal Brain Tumor Segmentation Yongsheng Mei Guru Venkataramani Tian-Shing Lan 34 10 0 06 Feb 2023
Recurrence With Correlation Network for Medical Image Registration Vignesh Sivan Teodora Vujovic R. Ranabhat Alexander Wong S. McLachlin M. Hardisty 23 2 0 05 Feb 2023
SegForestNet: Spatial-Partitioning-Based Aerial Image Segmentation D. Gritzner Jörn Ostermann 24 0 0 03 Feb 2023
An Out-of-Domain Synapse Detection Challenge for Microwasp Brain Connectomes Jingpeng Wu Yicong Li Nishika Gupta K. Shinomiya Pat Gunn A. Polilov Hanspeter Pfister D. Chklovskii D. Wei 19 2 0 01 Feb 2023
A Survey and Benchmark of Automatic Surface Reconstruction from Point Clouds Raphael Sulzer Renaud Marlet Bruno Vallet Loic Landrieu 3DPC 38 25 0 31 Jan 2023
The Projection-Enhancement Network (PEN) Christopher Z. Eddy Austin Naylor Bo Sun 3DV 3DPC 21 0 0 26 Jan 2023
TranSOP: Transformer-based Multimodal Classification for Stroke Treatment Outcome Prediction Zeynel A. Samak Philip Clatworthy Majid Mirmehdi 48 6 0 25 Jan 2023
FlatFormer: Flattened Window Attention for Efficient Point Cloud Transformer Zhijian Liu Xinyu Yang Haotian Tang Shang Yang Song Han 35 65 0 20 Jan 2023
Model-based inexact graph matching on top of CNNs for semantic scene understanding Jérémy Chopin Jean-Baptiste Fasquel Harold Mouchère Rozenn Dahyot Isabelle Bloch 32 6 0 18 Jan 2023
SegViz: A federated-learning based framework for multi-organ segmentation on heterogeneous data sets with partial annotations Adway U. Kanhere Pranav Kulkarni Paul H. Yi V. Parekh FedML 28 1 0 17 Jan 2023
Acute ischemic stroke lesion segmentation in non-contrast CT images using 3D convolutional neural networks A. Dobshik S. Verbitskiy I. Pestunov K. Sherman Yuriy Sinyavskiy A. Tulupov V. Berikov 26 6 0 17 Jan 2023
Advances in Medical Image Analysis with Vision Transformers: A Comprehensive Review Reza Azad A. Kazerouni Moein Heidari Ehsan Khodapanah Aghdam Amir Molaei Yiwei Jia Abin Jose Rijo Roy Dorit Merhof MedIm ViT 43 162 0 09 Jan 2023
The state-of-the-art 3D anisotropic intracranial hemorrhage segmentation on non-contrast head CT: The INSTANCE challenge Xiangyu Li Gongning Luo Kuanquan Wang Hongyu Wang Jun Liu ... Moona Mazher Abdul Qayyum Valeriia Abramova Xavier Llado Shuo Li 58 28 0 09 Jan 2023
Graph Convolution Based Cross-Network Multi-Scale Feature Fusion for Deep Vessel Segmentation Gangming Zhao Kongming Liang Changzai Pan Fandong Zhang Xianpeng Wu Xinyang Hu Yizhou Yu MedIm 39 27 0 06 Jan 2023
A deep local attention network for pre-operative lymph node metastasis prediction in pancreatic cancer via multiphase CT imaging Zhilin Zheng Xu Fang Jiawen Yao Mengmeng Zhu Le Lu ... Hong Lu Jian-Ping Lu Ling Zhang C. Shao Yun Bian MedIm 27 1 0 04 Jan 2023