3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation

21 June 2016

Thomas Brox

Papers citing "3D U-Net: Learning Dense Volumetric Segmentation from Sparse Annotation"

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Title
PCRLv2: A Unified Visual Information Preservation Framework for Self-supervised Pre-training in Medical Image Analysis Hong-Yu Zhou Chi-Ken Lu Chaoqi Chen Sibei Yang Yizhou Yu 56 52 0 02 Jan 2023
Denoising Diffusion Probabilistic Models for Generation of Realistic Fully-Annotated Microscopy Image Data Sets Dennis Eschweiler Rüveyda Yilmaz Matisse Baumann Ina Laube Rijo Roy Abin Jose Daniel Brückner Johannes Stegmaier DiffM MedIm 36 19 0 02 Jan 2023
Towards Reliable Medical Image Segmentation by utilizing Evidential Calibrated Uncertainty K. Zou Yidi Chen Ling Huang Xuedong Yuan Xiaojing Shen Meng Wang Rick Siow Mong Goh Yong-Jin Liu Huazhu Fu UQCV 38 4 0 01 Jan 2023
OrthoGAN:High-Precision Image Generation for Teeth Orthodontic Visualization Feihong Shen Jingjing Liu Hai-Zhen Li B. Fang Chenglong Ma Jinxiang Hao Yang Feng Youyi Zheng Youyi Zheng MedIm DiffM 57 0 0 29 Dec 2022
Fully 3D Implementation of the End-to-end Deep Image Prior-based PET Image Reconstruction Using Block Iterative Algorithm F. Hashimoto Yuya Onishi K. Ote H. Tashima T. Yamaya MedIm 25 13 0 22 Dec 2022
Lightweight Monocular Depth Estimation R. Ma Shi-yuan Chen Qin Zhang MDE 21 0 0 21 Dec 2022
TMS-Net: A Segmentation Network Coupled With A Run-time Quality Control Method For Robust Cardiac Image Segmentation F. Uslu Anil A. Bharath 39 14 0 21 Dec 2022
Multimodal CNN Networks for Brain Tumor Segmentation in MRI: A BraTS 2022 Challenge Solution Ramy A. Zeineldin Mohamed E. Karar Oliver Burgert Franziska Mathis-Ullrich 30 30 0 19 Dec 2022
Two-stage Contextual Transformer-based Convolutional Neural Network for Airway Extraction from CT Images Yanan Wu Shuiqing Zhao Shouliang Qi Jie Feng H. Pang ... Long Bai Meng-Yi Li Shuyue Xia W. Qian Hongliang Ren ViT MedIm 27 25 0 15 Dec 2022
Towards fully automated deep-learning-based brain tumor segmentation: is brain extraction still necessary? Bruno Machado Pacheco G. Cassia Danilo Silva 3DV 19 10 0 14 Dec 2022
MAGVIT: Masked Generative Video Transformer Lijun Yu Yong Cheng Kihyuk Sohn José Lezama Han Zhang ... Alexander G. Hauptmann Ming-Hsuan Yang Yuan Hao Irfan Essa Lu Jiang DiffM VGen 40 228 0 10 Dec 2022
UNETR++: Delving into Efficient and Accurate 3D Medical Image Segmentation Abdelrahman M. Shaker Muhammad Maaz H. Rasheed Salman Khan Ming-Hsuan Yang Fahad Shahbaz Khan MedIm 40 131 0 08 Dec 2022
ALTO: Alternating Latent Topologies for Implicit 3D Reconstruction Zhen Wang Shijie Zhou Jeong Joon Park Despoina Paschalidou Suya You Gordon Wetzstein Leonidas J. Guibas A. Kadambi 46 26 0 08 Dec 2022
RainUNet for Super-Resolution Rain Movie Prediction under Spatio-temporal Shifts Jinyoung Park Minseok Son Seungju Cho Inyoung Lee Changick Kim 13 3 0 07 Dec 2022
A Systematic Literature Review On Privacy Of Deep Learning Systems Vishal Jignesh Gandhi Sanchit Shokeen Saloni Koshti PILM 31 1 0 07 Dec 2022
Diffusion-SDF: Text-to-Shape via Voxelized Diffusion Muheng Li Yueqi Duan Jie Zhou Jiwen Lu DiffM 47 121 0 06 Dec 2022
Super-resolution Probabilistic Rain Prediction from Satellite Data Using 3D U-Nets and EarthFormers Yang Li Haiyu Dong Zuliang Fang Jonathan A. Weyn Pete Luferenko 41 5 0 06 Dec 2022
LE-UDA: Label-efficient unsupervised domain adaptation for medical image segmentation Ziyuan Zhao Fangcheng Zhou Kaixin Xu Zeng Zeng Cuntai Guan S Kevin Zhou OOD 42 43 0 05 Dec 2022
Region-Conditioned Orthogonal 3D U-Net for Weather4Cast Competition Taehyeon Kim Shinhwan Kang Hyeon-Cheol Shin Deukryeol Yoon Seong-Hoon Eom Kijung Shin Se-Young Yun 37 4 0 05 Dec 2022
Med-Query: Steerable Parsing of 9-DoF Medical Anatomies with Query Embedding Heng Guo Jianfeng Zhang K. Yan Le Lu Minfeng Xu MedIm 24 2 0 05 Dec 2022
Active learning using adaptable task-based prioritisation Shaheer U. Saeed João Ramalhinho Mark A. Pinnock Ziyi Shen Yunguan Fu ... D. Barratt Stephen P. Pereira Brian R. Davidson Matthew J. Clarkson Yipeng Hu 15 4 0 03 Dec 2022
Investigating certain choices of CNN configurations for brain lesion segmentation Masoomeh Rahimpour A. Radwan Henri Vandermeulen S. Sunaert K. Goffin M. Koole 50 1 0 02 Dec 2022
Automated anomaly-aware 3D segmentation of bones and cartilages in knee MR images from the Osteoarthritis Initiative B. Woo Craig B. Engstrom William Baresic Jurgen Fripp Stuart Crozier Shekhar S. Chandra 29 0 0 30 Nov 2022
Attentional Ptycho-Tomography (APT) for three-dimensional nanoscale X-ray imaging with minimal data acquisition and computation time Iksung Kang Ziling Wu Yi Jiang Yudong Yao Junjing Deng J. Klug S. Vogt George Barbastathis 31 7 0 29 Nov 2022
Medical Image Segmentation Review: The success of U-Net Reza Azad Ehsan Khodapanah Aghdam Amelie Rauland Yiwei Jia Atlas Haddadi Avval Afshin Bozorgpour Sanaz Karimijafarbigloo Joseph Paul Cohen Ehsan Adeli Dorit Merhof SSeg 35 268 0 27 Nov 2022
Robust One-shot Segmentation of Brain Tissues via Image-aligned Style Transformation Jinxin Lv Xiaoyu Zeng Sheng Wang Ran Duan Zhiwei Wang Qiang Li 32 3 0 26 Nov 2022
Joint segmentation and discontinuity-preserving deformable registration: Application to cardiac cine-MR images Xiang Chen Yan Xia Nishant Ravikumar Alejandro F Frangi 21 4 0 24 Nov 2022
Inversion of sea surface currents from satellite-derived SST-SSH synergies with 4DVarNets Ronan Fablet Bertrand Chapron Julien Le Sommer Florian Sévellec AI4Cl 24 9 0 23 Nov 2022
A comparative study of source-finding techniques in HI emission line cubes using SoFiA, MTObjects, and supervised deep learning J. Barkai M. Verheijen Estefania Talavera Martinez M. Wilkinson 23 0 0 23 Nov 2022
Self-supervised iRegNet for the Registration of Longitudinal Brain MRI of Diffuse Glioma Patients Ramy A. Zeineldin Mohamed E. Karar Franziska Mathis-Ullrich Oliver Burgert 30 4 0 20 Nov 2022
Adjacent Slice Feature Guided 2.5D Network for Pulmonary Nodule Segmentation Xinwei Xue Gaoyu Wang Long Ma Qi Jia Yi Wang MedIm 24 0 0 19 Nov 2022
Differentiable Uncalibrated Imaging Sidharth Gupta K. Kothari Valentin Debarnot Ivan Dokmanić MedIm 37 4 0 18 Nov 2022
Encoding feature supervised UNet++: Redesigning Supervision for liver and tumor segmentation Jiahao Cui Ruoxin Xiao S. Fang Minnan Pei Yi-tong Yu SSeg 19 0 0 15 Nov 2022
A Radiogenomics Pipeline for Lung Nodules Segmentation and Prediction of EGFR Mutation Status from CT Scans Ivo Gollini Navarrete Mohammad Yaqub 26 3 0 12 Nov 2022
What's the Situation with Intelligent Mesh Generation: A Survey and Perspectives Na Lei Zezeng Li Zebin Xu Ying Li X. Gu AI4CE 24 20 0 11 Nov 2022
Knowledge Distillation from Cross Teaching Teachers for Efficient Semi-Supervised Abdominal Organ Segmentation in CT Jae Won Choi 34 4 0 11 Nov 2022
Dual Multi-scale Mean Teacher Network for Semi-supervised Infection Segmentation in Chest CT Volume for COVID-19 Liansheng Wang Jiacheng Wang Lei Zhu Huazhu Fu Ping Li Gary Cheng Zhipeng Feng Shuo Li Pheng-Ann Heng 40 23 0 10 Nov 2022
Radiomics-enhanced Deep Multi-task Learning for Outcome Prediction in Head and Neck Cancer Mingyuan Meng Lei Bi Dagan Feng Jinman Kim 44 14 0 10 Nov 2022
Learning Spatio-Temporal Model of Disease Progression with NeuralODEs from Longitudinal Volumetric Data Dmitrii Lachinov A. Chakravarty C. Grechenig U. Schmidt-Erfurth Hrvoje Bogunović 33 11 0 08 Nov 2022
Neural PDE Solvers for Irregular Domains Biswajit Khara Ethan Herron Zhanhong Jiang Aditya Balu Chih-Hsuan Yang ... Anushrut Jignasu Soumik Sarkar Chinmay Hegde A. Krishnamurthy Baskar Ganapathysubramanian AI4CE 24 7 0 07 Nov 2022
Fighting the scanner effect in brain MRI segmentation with a progressive level-of-detail network trained on multi-site data M. Svanera Mattia Savardi A. Signoroni Sergio Benini L. Muckli 26 3 0 04 Nov 2022
MALUNet: A Multi-Attention and Light-weight UNet for Skin Lesion Segmentation Jiacheng Ruan Suncheng Xiang Mingye Xie Ting Liu Yuzhuo Fu 33 134 0 03 Nov 2022
ImageCAS: A Large-Scale Dataset and Benchmark for Coronary Artery Segmentation based on Computed Tomography Angiography Images An Zeng Chunbiao Wu Meiping Huang Jian Zhuang Shanshan Bi ... Tianchen Wang Yiyu Shi Xuelong Li Guisen Lin Xiaowei Xu 30 58 0 03 Nov 2022
Fourier Disentangled Multimodal Prior Knowledge Fusion for Red Nucleus Segmentation in Brain MRI Guanghui Fu Gabriel Jimenez Sophie Loizillon Rosana El Jurdi Lydia Chougar ... Ninon Burgos Stéphane Lehéricy Daniel Racoceanu O. Colliot the Iceberg Study Group 8 1 0 02 Nov 2022
MAgNET: A Graph U-Net Architecture for Mesh-Based Simulations Saurabh Deshpande Stéphane P. A. Bordas J. Lengiewicz AI4CE GNN 92 28 0 01 Nov 2022
SDMuse: Stochastic Differential Music Editing and Generation via Hybrid Representation Chen Zhang Yi Ren Kecheng Zhang Shuicheng Yan DiffM 32 13 0 01 Nov 2022
Scoliosis Detection using Deep Neural Network Y. Nguyen 31 1 0 31 Oct 2022
Automated analysis of diabetic retinopathy using vessel segmentation maps as inductive bias Linus Kreitner Ivan Ezhov Daniel Rueckert Johannes C. Paetzold M. Menten 43 2 0 28 Oct 2022
IB-U-Nets: Improving medical image segmentation tasks with 3D Inductive Biased kernels Shrajan Bhandary Z. Babaiee D. Kostyszyn T. Fechter C. Zamboglou Anca-Ligia Grosu Radu Grosu 40 1 0 28 Oct 2022
Exploiting spatial information with the informed complex-valued spatial autoencoder for target speaker extraction Annika Briegleb Mhd Modar Halimeh Walter Kellermann 36 6 0 27 Oct 2022