Combining Fully Convolutional and Recurrent Neural Networks for 3D Biomedical Image Segmentation

5 September 2016

Papers citing "Combining Fully Convolutional and Recurrent Neural Networks for 3D Biomedical Image Segmentation"

49 / 49 papers shown

Title
Geometric Framework for Cell Oversegmentation Peter Chen Bryan Chang Olivia Annette Creasey Julie Beth Sneddon Zev Gartner Yining Liu 41 0 0 03 Feb 2025
The state-of-the-art 3D anisotropic intracranial hemorrhage segmentation on non-contrast head CT: The INSTANCE challenge Xiangyu Li Gongning Luo Kuanquan Wang Hongyu Wang Jun Liu ... Moona Mazher Abdul Qayyum Valeriia Abramova Xavier Llado Shuo Li 53 28 0 09 Jan 2023
Deep representation learning: Fundamentals, Perspectives, Applications, and Open Challenges K. T. Baghaei Amirreza Payandeh Pooya Fayyazsanavi Shahram Rahimi Zhiqian Chen Somayeh Bakhtiari Ramezani FaML AI4TS 38 6 0 27 Nov 2022
Self-Supervised Guided Segmentation Framework for Unsupervised Anomaly Detection Peng-Fei Xing Yanpeng Sun Zechao Li 32 12 0 26 Sep 2022
YOLO2U-Net: Detection-Guided 3D Instance Segmentation for Microscopy A. Ziabari Derek C. Rose A. Shirinifard D. Solecki 21 2 0 13 Jul 2022
Complete identification of complex salt geometries from inaccurate migrated subsurface offset gathers using deep learning Ana Paula O. Muller J. Costa C. Bom E. Faria Matheus Klatt G. Teixeira M. P. de Albuquerque M. P. de Albuquerque 25 10 0 20 Apr 2022
A Topology-Attention ConvLSTM Network and Its Application to EM Images Jiaqi Yang Xiaoling Hu Chao Chen Chialing Tsai 3DPC MedIm 22 3 0 07 Feb 2022
Medical Image Segmentation with 3D Convolutional Neural Networks: A Survey S. Niyas S. Pawan Anand Kumar Jeny Rajan MedIm 55 83 0 19 Aug 2021
UNETR: Transformers for 3D Medical Image Segmentation Ali Hatamizadeh Yucheng Tang Vishwesh Nath Dong Yang Andriy Myronenko Bennett Landman H. Roth Daguang Xu ViT MedIm 95 1,538 0 18 Mar 2021
Learning With Context Feedback Loop for Robust Medical Image Segmentation K. Girum G. Créhange A. Lalande MedIm 22 39 0 04 Mar 2021
Capturing implicit hierarchical structure in 3D biomedical images with self-supervised hyperbolic representations Joy Hsu Jeffrey Gu Gong-Her Wu Wah Chiu Serena Yeung SSL 36 27 0 03 Dec 2020
Bridging 2D and 3D Segmentation Networks for Computation Efficient Volumetric Medical Image Segmentation: An Empirical Study of 2.5D Solutions Yichi Zhang Qingcheng Liao Leiting Ding Jicong Zhang 3DV 26 81 0 13 Oct 2020
DeU-Net: Deformable U-Net for 3D Cardiac MRI Video Segmentation Shunjie Dong Jinlong Zhao Maojun Zhang Zhengxue Shi Jianing Deng Yiyu Shi Mei Tian Cheng Zhuo 28 20 0 13 Jul 2020
LORCK: Learnable Object-Resembling Convolution Kernels E. Lazareva Oleg Y. Rogov O. Shegaǐ D. Larionov Dmitry V. Dylov 30 4 0 09 Jul 2020
Stable and expressive recurrent vision models Drew Linsley A. Ashok L. Govindarajan Rex G Liu Thomas Serre 19 45 0 22 May 2020
4D Deep Learning for Multiple Sclerosis Lesion Activity Segmentation N. Gessert M. Bengs Julia Kruger R. Opfer A. Ostwaldt Praveena Manogaran S. Schippling Alexander Schlaefer MedIm 4 13 0 20 Apr 2020
On the Texture Bias for Few-Shot CNN Segmentation Reza Azad A. Fayjie C. Kauffmann Ismail Ben Ayed M. Pedersoli Jose Dolz SSeg 27 70 0 09 Mar 2020
A Two-step-training Deep Learning Framework for Real-time Computational Imaging without Physics Priors Ruibo Shang Kevin Hoffer-Hawlik Geoffrey P. Luke 25 14 0 10 Jan 2020
Machine Learning Techniques for Biomedical Image Segmentation: An Overview of Technical Aspects and Introduction to State-of-Art Applications Hyunseok Seo M. B. Khuzani V. Vasudevan Charles Huang Hongyi Ren Ruoxiu Xiao Xiao Jia Lei Xing VLM 24 218 0 06 Nov 2019
Machine Vision Guided 3D Medical Image Compression for Efficient Transmission and Accurate Segmentation in the Clouds Zihao Liu Xiaowei Xu Tao Liu Qi Liu Yanzhi Wang Yiyu Shi Wujie Wen Meiping Huang Haiyun Yuan Jian Zhuang 15 33 0 09 Apr 2019
A Model-Driven Stack-Based Fully Convolutional Network for Pancreas Segmentation Hao Li Jun Yu Li Xiaozhu Lin Xiaohua Qian 30 10 0 03 Mar 2019
Spatio-Temporal Convolutional LSTMs for Tumor Growth Prediction by Learning 4D Longitudinal Patient Data Ling Zhang Le Lu Xiaosong Wang Robert Zhu M. Bagheri Ronald M. Summers Jianhua Yao 19 34 0 23 Feb 2019
A New Ensemble Learning Framework for 3D Biomedical Image Segmentation Hao Zheng Yizhe Zhang Lin Yang Peixian Liang Zhuo Zhao Chaoli Wang Danny Chen 3DV 31 75 0 10 Dec 2018
Joint Vertebrae Identification and Localization in Spinal CT Images by Combining Short- and Long-Range Contextual Information Haofu Liao A. Mesfin Jiebo Luo 30 85 0 09 Dec 2018
Elastic Boundary Projection for 3D Medical Image Segmentation Tianwei Ni Lingxi Xie Huangjie Zheng Elliot K. Fishman Alan Yuille 27 34 0 03 Dec 2018
Robust neural circuit reconstruction from serial electron microscopy with convolutional recurrent networks Drew Linsley Junkyung Kim D. Berson Thomas Serre 3DV 30 17 0 28 Nov 2018
A Generative Adversarial Model for Right Ventricle Segmentation N. Savioli M. Vieira P. Lamata Giovanni Montana GAN MedIm 21 7 0 27 Sep 2018
Multi Modal Convolutional Neural Networks for Brain Tumor Segmentation Mehmet Aygün Y. Sahin Gözde B. Ünal MedIm 24 21 0 17 Sep 2018
Automated segmentation on the entire cardiac cycle using a deep learning work-flow N. Savioli M. Vieira P. Lamata Giovanni Montana 13 24 0 31 Aug 2018
Structured Adversarial Attack: Towards General Implementation and Better Interpretability Kaidi Xu Sijia Liu Pu Zhao Pin-Yu Chen Huan Zhang Quanfu Fan Deniz Erdogmus Yanzhi Wang X. Lin AAML 21 160 0 05 Aug 2018
Recurrent neural networks for aortic image sequence segmentation with sparse annotations Wenjia Bai Hideaki Suzuki C. Qin G. Tarroni Ozan Oktay Paul M. Matthews Daniel Rueckert MedIm 34 112 0 01 Aug 2018
BoxNet: Deep Learning Based Biomedical Image Segmentation Using Boxes Only Annotation Ling Yang Yizhe Zhang Zhuo Zhao Hao Zheng Peixian Liang M. Ying A. Ahuja Danny Chen 24 31 0 02 Jun 2018
Microscopy Cell Segmentation via Convolutional LSTM Networks Assaf Arbelle Tammy Riklin-Raviv 42 73 0 29 May 2018
A Segmentation-aware Deep Fusion Network for Compressed Sensing MRI Zhiwen Fan Liyan Sun Xinghao Ding Yue Huang C. Cai John Paisley MedIm 30 27 0 04 Apr 2018
Latent-space Physics: Towards Learning the Temporal Evolution of Fluid Flow S. Wiewel M. Becher N. Thürey AI4CE 26 273 0 27 Feb 2018
Fully Convolutional Network Ensembles for White Matter Hyperintensities Segmentation in MR Images Hongwei Bran Li Gongfa Jiang Jianguo Zhang Ruixuan Wang Zhaolei Wang Weishi Zheng Bjoern H. Menze 34 194 0 14 Feb 2018
A New Registration Approach for Dynamic Analysis of Calcium Signals in Organs Peixian Liang Jianxu Chen Pavel A. Brodskiy Qinfeng Wu Yejia Zhang Yizhe Zhang Ling Yang J. Zartman Danny Chen 81 6 0 01 Feb 2018
Learning to Segment Moving Objects P. Tokmakov Cordelia Schmid Alahari Karteek VOS 36 97 0 01 Dec 2017
PSIque: Next Sequence Prediction of Satellite Images using a Convolutional Sequence-to-Sequence Network Seungkyun Hong Seongchan Kim M. Joh Sa-kwang Song 38 24 0 29 Nov 2017
Wider and Deeper, Cheaper and Faster: Tensorized LSTMs for Sequence Learning Zhen He Shaobing Gao Liang Xiao Daxue Liu Hangen He David Barber AIMat 37 64 0 05 Nov 2017
Improving Deep Pancreas Segmentation in CT and MRI Images via Recurrent Neural Contextual Learning and Direct Loss Function Jinzheng Cai Le Lu Yuanpu Xie Fuyong Xing Ling Yang MedIm SSeg 35 132 0 16 Jul 2017
Morphological Error Detection in 3D Segmentations David Rolnick Yaron Meirovitch T. Parag Hanspeter Pfister Viren Jain J. Lichtman E. Boyden Nir Shavit 3DPC 3DH 19 26 0 30 May 2017
Extracting 3D Vascular Structures from Microscopy Images using Convolutional Recurrent Networks Russell Bates B. Irving B. Markelc Jakob Kaeppler R. Muschel Vicente Grau Julia A. Schnabel MedIm 25 20 0 26 May 2017
Multi-stage Multi-recursive-input Fully Convolutional Networks for Neuronal Boundary Detection Wei Shen Bin Wang Yuan Jiang Yan Wang Alan Yuille 22 62 0 24 Mar 2017
A Survey on Deep Learning in Medical Image Analysis G. Litjens Thijs Kooi B. Bejnordi A. Setio F. Ciompi Mohsen Ghafoorian Jeroen van der Laak Bram van Ginneken C. I. Sánchez OOD 340 10,633 0 19 Feb 2017
A Fixed-Point Model for Pancreas Segmentation in Abdominal CT Scans Yuyin Zhou Lingxi Xie Wei Shen Yan Wang Elliot K. Fishman Alan Yuille MedIm 41 36 0 25 Dec 2016
FusionNet: A deep fully residual convolutional neural network for image segmentation in connectomics Tran Minh Quan David Grant Colburn Hildebrand W. Jeong 24 236 0 16 Dec 2016
Automatic Lymphocyte Detection in H&E Images with Deep Neural Networks Jianxu Chen C. Srinivas 37 31 0 09 Dec 2016
Convolutional LSTM Network: A Machine Learning Approach for Precipitation Nowcasting Xingjian Shi Zhourong Chen Hao Wang Dit-Yan Yeung W. Wong W. Woo 239 7,916 0 13 Jun 2015