MIMIC-Extract: A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-III

19 July 2019

Shirly Wang

Matthew B. A. McDermott

Papers citing "MIMIC-Extract: A Data Extraction, Preprocessing, and Representation Pipeline for MIMIC-III"

50 / 86 papers shown

Title
Revisiting the MIMIC-IV Benchmark: Experiments Using Language Models for Electronic Health Records Jesus Lovon Thouria Ben-Haddi Jules Di Scala José G. Moreno L. Tamine 60 2 0 29 Apr 2025
DynaGraph: Interpretable Multi-Label Prediction from EHRs via Dynamic Graph Learning and Contrastive Augmentation Munib Mesinovic Soheila Molaei Peter Watkinson Tingting Zhu AI4TS 38 0 0 28 Mar 2025
Unmasking Societal Biases in Respiratory Support for ICU Patients through Social Determinants of Health Mira Moukheiber L. Moukheiber Dana Moukheiber Hyung-Chul Lee 67 2 0 23 Feb 2025
Constructing Confidence Intervals for Average Treatment Effects from Multiple Datasets Yuxin Wang Maresa Schröder Dennis Frauen J. Schweisthal Konstantin Hess Stefan Feuerriegel CML 78 0 0 16 Dec 2024
Towards Foundation Models for Critical Care Time Series Manuel Burger Fedor Sergeev Malte Londschien Daphné Chopard Hugo Yèche ... Zeynep Babür Jasmina Bogojeska M. Faltys Rita Kuznetsova Gunnar Rätsch AI4TS LM&MA 75 0 0 25 Nov 2024
Learning Predictive Checklists with Probabilistic Logic Programming Yukti Makhija E. Brouwer Rahul G. Krishnan 71 0 0 25 Nov 2024
Ethical Challenges and Evolving Strategies in the Integration of Artificial Intelligence into Clinical Practice Ellison B. Weiner Irene Dankwa-Mullan William A. Nelson Saeed Hassanpour 80 2 0 18 Nov 2024
CRTRE: Causal Rule Generation with Target Trial Emulation Framework Junda Wang Weijian Li Han Wang Hanjia Lyu Caroline P. Thirukumaran A. Mesfin Hong-ye Yu Jiebo Luo 38 0 0 10 Nov 2024
Controlling for Unobserved Confounding with Large Language Model Classification of Patient Smoking Status Samuel Lee Zach Wood-Doughty CML 50 0 0 05 Nov 2024
Training and Evaluating Causal Forecasting Models for Time-Series Thomas Crasson Yacine Nabet Mathias Lécuyer CML AI4TS 44 0 0 31 Oct 2024
Stabilized Neural Prediction of Potential Outcomes in Continuous Time Konstantin Hess Stefan Feuerriegel 53 0 0 04 Oct 2024
When Raw Data Prevails: Are Large Language Model Embeddings Effective in Numerical Data Representation for Medical Machine Learning Applications? Yanjun Gao Skatje Myers Shan Chen Dmitriy Dligach Timothy A Miller Danielle S. Bitterman M. Churpek Majid Afshar 46 7 0 15 Aug 2024
EHRmonize: A Framework for Medical Concept Abstraction from Electronic Health Records using Large Language Models João Matos Jack Gallifant Jian Pei A. I. Wong 30 4 0 28 Jun 2024
Large Language Model as a Universal Clinical Multi-task Decoder Yujiang Wu Hongjian Song Jiawen Zhang Xumeng Wen Shun Zheng Jiang Bian 38 1 0 18 Jun 2024
Privacy-Preserving Heterogeneous Federated Learning for Sensitive Healthcare Data Yukai Xu Jingfeng Zhang Yujie Gu FedML 27 1 0 15 Jun 2024
G-Transformer for Conditional Average Potential Outcome Estimation over Time Konstantin Hess Dennis Frauen Valentyn Melnychuk Stefan Feuerriegel 54 2 0 31 May 2024
PEaCE: A Chemistry-Oriented Dataset for Optical Character Recognition on Scientific Documents Nan Zhang Connor T. Heaton Sean Timothy Okonsky Prasenjit Mitra H. E. Toraman 33 1 0 23 Mar 2024
Dynamic Survival Analysis for Early Event Prediction Hugo Yèche Manuel Burger Dinara Veshchezerova Gunnar Rätsch 34 2 0 19 Mar 2024
Recent Advances, Applications, and Open Challenges in Machine Learning for Health: Reflections from Research Roundtables at ML4H 2023 Symposium Hyewon Jeong Sarah Jabbour Yuzhe Yang Rahul Thapta Hussein Mozannar ... Linying Zhang Harvineet Singh Tom Hartvigsen Helen Zhou Chinasa T. Okolo VLM AI4TS OOD 43 2 0 03 Mar 2024
ED-Copilot: Reduce Emergency Department Wait Time with Language Model Diagnostic Assistance Liwen Sun Abhineet Agarwal Aaron E. Kornblith Bin-Xia Yu Chenyan Xiong 56 4 0 21 Feb 2024
Bayesian Neural Networks with Domain Knowledge Priors Dylan Sam Rattana Pukdee Daniel P. Jeong Yewon Byun J. Zico Kolter BDL UQCV 38 9 0 20 Feb 2024
Time Series Diffusion in the Frequency Domain Jonathan Crabbé Nicolas Huynh Jan Stanczuk M. Schaar DiffM 21 11 0 08 Feb 2024
A Perspective on Individualized Treatment Effects Estimation from Time-series Health Data Ghadeer O. Ghosheh Moritz Gögl Tingting Zhu 30 0 0 07 Feb 2024
Benchmarking with MIMIC-IV, an irregular, spare clinical time series dataset Hung Bui Harikrishna Warrier Yogesh Gupta 24 1 0 27 Jan 2024
Event-Based Contrastive Learning for Medical Time Series Hyewon Jeong Nassim Oufattole Matthew B. A. McDermott Aparna Balagopalan P. Chandak Marzyeh Ghassemi Collin M. Stultz 21 4 0 16 Dec 2023
Benchmarking Distribution Shift in Tabular Data with TableShift Josh Gardner Zoran Popovic Ludwig Schmidt OOD 24 32 0 10 Dec 2023
Ascle: A Python Natural Language Processing Toolkit for Medical Text Generation Rui Yang Qingcheng Zeng Keen You Yujie Qiao Lucas Huang ... Dragomir R. Radev Zhiyong Lu Hua Xu Qingyu Chen Irene Z Li ELM LM&MA 28 3 0 28 Nov 2023
A Neural Framework for Generalized Causal Sensitivity Analysis Dennis Frauen F. Imrie Alicia Curth Valentyn Melnychuk Stefan Feuerriegel M. Schaar CML 31 10 0 27 Nov 2023
Are Normalizing Flows the Key to Unlocking the Exponential Mechanism? Robert A. Bridges Vandy J. Tombs Christopher B. Stanley 20 1 0 15 Nov 2023
Multimodal Clinical Benchmark for Emergency Care (MC-BEC): A Comprehensive Benchmark for Evaluating Foundation Models in Emergency Medicine Emma Chen Aman Kansal Julie Chen B. Jin Julia Rachel Reisler David A Kim Pranav Rajpurkar 43 14 0 07 Nov 2023
COSTAR: Improved Temporal Counterfactual Estimation with Self-Supervised Learning Chuizheng Meng Yihe Dong Sercan Ö. Arik Yan Liu Tomas Pfister CML AI4TS 29 0 0 01 Nov 2023
General-Purpose Retrieval-Enhanced Medical Prediction Model Using Near-Infinite History Junu Kim Chaeeun Shim Bosco Seong Kyu Yang Chami Im Sung Yoon Lim Han-Gil Jeong Edward Choi 28 8 0 31 Oct 2023
Bayesian Neural Controlled Differential Equations for Treatment Effect Estimation Konstantin Hess Valentyn Melnychuk Dennis Frauen Stefan Feuerriegel 27 14 0 26 Oct 2023
Learning and DiSentangling Patient Static Information from Time-series Electronic HEalth Record (STEER) Wei-Duen Liao J. Voldman OOD CML 9 0 0 20 Sep 2023
Continuous Time Evidential Distributions for Irregular Time Series Taylor W. Killian Haoran Zhang Thomas Hartvigsen Ava P. Amini OOD EDL 39 0 0 25 Jul 2023
EHRSHOT: An EHR Benchmark for Few-Shot Evaluation of Foundation Models Michael Wornow Rahul Thapa E. Steinberg Jason Alan Fries N. Shah VLM OOD AI4MH 23 36 0 05 Jul 2023
Event Stream GPT: A Data Pre-processing and Modeling Library for Generative, Pre-trained Transformers over Continuous-time Sequences of Complex Events Matthew B. A. McDermott Bret A. Nestor Peniel Argaw I. Kohane AI4TS 24 21 0 20 Jun 2023
Warpformer: A Multi-scale Modeling Approach for Irregular Clinical Time Series Jiawen Zhang Shun Zheng Wei Cao Jiang Bian Jia Li AI4TS 29 26 0 14 Jun 2023
Explaining a machine learning decision to physicians via counterfactuals Supriya Nagesh Nina Mishra Yonatan Naamad James M. Rehg M. A. Shah Alexei Wagner CML OOD 6 4 0 10 Jun 2023
Temporal-spatial Correlation Attention Network for Clinical Data Analysis in Intensive Care Unit Weizhi Nie Yu-Yi Yu Chen Zhang Dan Song Lina Zhao Yunru Bai 24 6 0 03 Jun 2023
Echoes of Biases: How Stigmatizing Language Affects AI Performance Yizhi Liu Weiguang Wang G. Gao Ritu Agarwal 23 2 0 17 May 2023
Causal Discovery with Stage Variables for Health Time Series Bharat Srikishan Samantha Kleinberg CML 6 0 0 05 May 2023
MLHOps: Machine Learning for Healthcare Operations Kristoffer Larsen Vallijah Subasri A. Krishnan Cláudio Tinoco Mesquita Diana Paez Laleh Seyyed-Kalantari Amalia Peix LM&MA AI4TS VLM 27 2 0 04 May 2023
Coarse race data conceals disparities in clinical risk score performance Rajiv Movva Divya Shanmugam Kaihua Hou P. Pathak John Guttag Nikhil Garg Emma Pierson 11 17 0 18 Apr 2023
Self-supervised learning-based general laboratory progress pretrained model for cardiovascular event detection Lichin Chen Kuo-Hsuan Hung Y. Tseng Hsin-Yao Wang T. Lu Wei-Chieh Huang Yu Tsao 24 7 0 13 Mar 2023
Anamnesic Neural Differential Equations with Orthogonal Polynomial Projections E. Brouwer Rahul G. Krishnan AI4TS 17 0 0 03 Mar 2023
Improving Text-based Early Prediction by Distillation from Privileged Time-Series Text Jinghui Liu Daniel Capurro Anthony N. Nguyen Karin Verspoor AI4TS 21 3 0 26 Jan 2023
The Missing Indicator Method: From Low to High Dimensions Mike Van Ness Tomas M. Bosschieter Roberto Halpin-Gregorio Madeleine Udell AI4TS 27 15 0 16 Nov 2022
UniHPF : Universal Healthcare Predictive Framework with Zero Domain Knowledge Kyunghoon Hur Jungwoo Oh Junu Kim Jiyoun Kim Min Jae Lee Eunbyeol Cho Seong-Eun Moon Young-Hak Kim Edward Choi 24 5 0 15 Nov 2022
A Survey on Preserving Fairness Guarantees in Changing Environments Ainhize Barrainkua Paula Gordaliza Jose A. Lozano Novi Quadrianto FaML 27 3 0 14 Nov 2022