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GatorTron: A Large Clinical Language Model to Unlock Patient Information
  from Unstructured Electronic Health Records

GatorTron: A Large Clinical Language Model to Unlock Patient Information from Unstructured Electronic Health Records

2 February 2022
Xi Yang
Aokun Chen
Nima M. Pournejatian
Hoo-Chang Shin
Kaleb E. Smith
Christopher Parisien
Colin B. Compas
Cheryl Martin
Mona G. Flores
Ying Zhang
Tanja Magoc
C. Harle
Gloria P. Lipori
Duane A. Mitchell
W. Hogan
E. Shenkman
Jiang Bian
Yonghui Wu
    AI4MH
    LM&MA
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Papers citing "GatorTron: A Large Clinical Language Model to Unlock Patient Information from Unstructured Electronic Health Records"

50 / 156 papers shown
Title
Interpretable graph-based models on multimodal biomedical data integration: A technical review and benchmarking
Interpretable graph-based models on multimodal biomedical data integration: A technical review and benchmarking
Alireza Sadeghi
F. Hajati
A. Argha
Nigel H Lovell
Min Yang
Hamid Alinejad-Rokny
27
0
0
03 May 2025
Aligning Large Language Models with Healthcare Stakeholders: A Pathway to Trustworthy AI Integration
Aligning Large Language Models with Healthcare Stakeholders: A Pathway to Trustworthy AI Integration
Kexin Ding
Mu Zhou
Akshay Chaudhari
Shaoting Zhang
Dimitris N. Metaxas
LM&MA
41
0
0
02 May 2025
BRIDGE: Benchmarking Large Language Models for Understanding Real-world Clinical Practice Text
BRIDGE: Benchmarking Large Language Models for Understanding Real-world Clinical Practice Text
Jiageng Wu
Bowen Gu
Ren Zhou
Kevin Xie
Doug Snyder
...
S.
Jonathan H. Chen
Santiago Romero-Brufau
K. J. Lin
Jie Yang
LM&MA
ELM
92
0
0
28 Apr 2025
Adaptive Helpfulness-Harmlessness Alignment with Preference Vectors
Adaptive Helpfulness-Harmlessness Alignment with Preference Vectors
Ren-Wei Liang
Chin-Ting Hsu
Chan-Hung Yu
Saransh Agrawal
Shih-Cheng Huang
Shang-Tse Chen
Kuan-Hao Huang
Shao-Hua Sun
76
0
0
27 Apr 2025
EMRModel: A Large Language Model for Extracting Medical Consultation Dialogues into Structured Medical Records
EMRModel: A Large Language Model for Extracting Medical Consultation Dialogues into Structured Medical Records
Shuguang Zhao
Qiangzhong Feng
Zhiyang He
Peipei Sun
Yingying Wang
...
Xiaoliang Lu
Mei Cheng
Xinyue Wu
Yanyan Wang
Wei Liang
LM&MA
37
0
0
23 Apr 2025
Accelerating Clinical NLP at Scale with a Hybrid Framework with Reduced GPU Demands: A Case Study in Dementia Identification
Accelerating Clinical NLP at Scale with a Hybrid Framework with Reduced GPU Demands: A Case Study in Dementia Identification
Jianlin Shi
Qiwei Gan
Elizabeth Hanchrow
Annie Bowles
John Stanley
Adam P. Bress
Jordana B. Cohen
Patrick R. Alba
21
0
0
16 Apr 2025
Semantically Encoding Activity Labels for Context-Aware Human Activity Recognition
Semantically Encoding Activity Labels for Context-Aware Human Activity Recognition
Wen Ge
Guanyi Mou
Emmanuel O. Agu
Kyumin Lee
33
0
0
10 Apr 2025
ChronoFormer: Time-Aware Transformer Architectures for Structured Clinical Event Modeling
ChronoFormer: Time-Aware Transformer Architectures for Structured Clinical Event Modeling
Yuanyun Zhang
Shi Li
37
0
0
10 Apr 2025
Patients Speak, AI Listens: LLM-based Analysis of Online Reviews Uncovers Key Drivers for Urgent Care Satisfaction
Patients Speak, AI Listens: LLM-based Analysis of Online Reviews Uncovers Key Drivers for Urgent Care Satisfaction
Xiaoran Xu
Zhaoqian Xue
Chi Zhang
Jhonatan Medri
Junjie Xiong
Jiayan Zhou
Jin Jin
Yongfeng Zhang
Siyuan Ma
Lingyao Li
45
1
0
26 Mar 2025
Multimodal AI-driven Biomarker for Early Detection of Cancer Cachexia
Sabeen Ahmed
Nathan Parker
Margaret Park
Evan W. Davis
Jennifer B. Permuth
M. Schabath
Yasin Yilmaz
Ghulam Rasool
38
0
0
09 Mar 2025
Addressing Overprescribing Challenges: Fine-Tuning Large Language Models for Medication Recommendation Tasks
Zihao Zhao
Chenxiao Fan
Chongming Gao
Fuli Feng
Xiangnan He
LM&MA
AI4MH
78
0
0
05 Mar 2025
Cancer Type, Stage and Prognosis Assessment from Pathology Reports using LLMs
Rachit Saluja
Jacob Rosenthal
Yoav Artzi
David J. Pisapia
B. Liechty
M. Sabuncu
LM&MA
ELM
63
0
0
03 Mar 2025
An evaluation of DeepSeek Models in Biomedical Natural Language Processing
Zaifu Zhan
Shuang Zhou
Huixue Zhou
Jiawen Deng
Yu Hou
Jeremy Yeung
Rui Zhang
ELM
49
0
0
01 Mar 2025
Cyber Defense Reinvented: Large Language Models as Threat Intelligence Copilots
Cyber Defense Reinvented: Large Language Models as Threat Intelligence Copilots
Xiaoqun Liu
Jiacheng Liang
Qiben Yan
Muchao Ye
Jinyuan Jia
Zhaohan Xi
Jinyuan Jia
Zhaohan Xi
56
0
0
28 Feb 2025
Uncertainty-aware abstention in medical diagnosis based on medical texts
Uncertainty-aware abstention in medical diagnosis based on medical texts
Artem Vazhentsev
Ivan Sviridov
Alvard Barseghyan
Gleb Kuzmin
Alexander Panchenko
A. Nesterov
Artem Shelmanov
Maxim Panov
51
0
0
25 Feb 2025
What are Models Thinking about? Understanding Large Language Model Hallucinations "Psychology" through Model Inner State Analysis
What are Models Thinking about? Understanding Large Language Model Hallucinations "Psychology" through Model Inner State Analysis
Peiran Wang
Yang Liu
Yunfei Lu
Jue Hong
Ye Wu
HILM
LRM
67
0
0
20 Feb 2025
ECG-Expert-QA: A Benchmark for Evaluating Medical Large Language Models in Heart Disease Diagnosis
ECG-Expert-QA: A Benchmark for Evaluating Medical Large Language Models in Heart Disease Diagnosis
Xu Wang
Jiaju Kang
Puyu Han
Yubao Zhao
Qian Liu
Liwenfei He
Lingqiong Zhang
Lingyun Dai
Yongcheng Wang
Jie Tao
LM&MA
60
1
0
16 Feb 2025
From large language models to multimodal AI: A scoping review on the potential of generative AI in medicine
From large language models to multimodal AI: A scoping review on the potential of generative AI in medicine
Lukas Buess
Matthias Keicher
Nassir Navab
Andreas K. Maier
Soroosh Tayebi Arasteh
LM&MA
112
0
0
13 Feb 2025
Assessing the Impact of the Quality of Textual Data on Feature Representation and Machine Learning Models
Assessing the Impact of the Quality of Textual Data on Feature Representation and Machine Learning Models
Tabinda Sarwar
Antonio Jose Jimeno Yepes
Lawrence Cavedon
58
0
0
12 Feb 2025
LAST SToP For Modeling Asynchronous Time Series
LAST SToP For Modeling Asynchronous Time Series
Shubham Gupta
Thibaut Durand
Graham Taylor
Lilian W. Białokozowicz
AI4TS
42
0
0
04 Feb 2025
A Survey of Large Language Models for Healthcare: from Data, Technology, and Applications to Accountability and Ethics
A Survey of Large Language Models for Healthcare: from Data, Technology, and Applications to Accountability and Ethics
Kai He
Rui Mao
Qika Lin
Yucheng Ruan
Xiang Lan
Mengling Feng
Erik Cambria
LM&MA
AILaw
93
151
0
28 Jan 2025
Academic case reports lack diversity: Assessing the presence and diversity of sociodemographic and behavioral factors related to Post COVID-19 Condition
Academic case reports lack diversity: Assessing the presence and diversity of sociodemographic and behavioral factors related to Post COVID-19 Condition
Juan Andres Medina Florez
Shaina Raza
Rashida Lynn
Zahra Shakeri
Brendan T. Smith
Elham Dolatabadi
64
0
0
21 Jan 2025
Neuradicon: operational representation learning of neuroimaging reports
Neuradicon: operational representation learning of neuroimaging reports
Henry Watkins
Robert J. Gray
Adam Julius
Y. Mah
W. H. Pinaya
...
Jorge M. Cardoso
Sebastien Ourselin
Geraint Rees
Rolf Jaeger
P. Nachev
MedIm
75
1
0
20 Jan 2025
Conversational Text Extraction with Large Language Models Using Retrieval-Augmented Systems
Conversational Text Extraction with Large Language Models Using Retrieval-Augmented Systems
Soham Roy
Mitul Goswami
Nisharg Nargund
Suneeta Mohanty
Prasant Kumar Pattnaik
RALM
44
0
0
20 Jan 2025
A Comprehensive Survey of Foundation Models in Medicine
A Comprehensive Survey of Foundation Models in Medicine
Wasif Khan
Seowung Leem
Kyle B. See
Joshua K. Wong
Shaoting Zhang
R. Fang
AI4CE
LM&MA
VLM
95
17
0
17 Jan 2025
A Comprehensive Survey of Large Language Models and Multimodal Large Language Models in Medicine
A Comprehensive Survey of Large Language Models and Multimodal Large Language Models in Medicine
Hanguang Xiao
Feizhong Zhou
X. Liu
Tianqi Liu
Zhipeng Li
Xin Liu
Xiaoxuan Huang
AILaw
LM&MA
LRM
59
17
0
31 Dec 2024
BioBridge: Unified Bio-Embedding with Bridging Modality in Code-Switched
  EMR
BioBridge: Unified Bio-Embedding with Bridging Modality in Code-Switched EMR
Jangyeong Jeon
Sangyeon Cho
Dongjoon Lee
Changhee Lee
Junyeong Kim
70
0
0
16 Dec 2024
Large Language Models for Medical Forecasting -- Foresight 2
Large Language Models for Medical Forecasting -- Foresight 2
Z. Kraljevic
Joshua Au Yeung
D. Bean
James T. Teo
Richard J. B. Dobson
LM&MA
69
0
0
14 Dec 2024
Does your model understand genes? A benchmark of gene properties for
  biological and text models
Does your model understand genes? A benchmark of gene properties for biological and text models
Yoav Kan-Tor
Michael M. Danziger
Eden Zohar
Matan Ninio
Yishai Shimoni
60
1
0
05 Dec 2024
Another look at inference after prediction
Another look at inference after prediction
Jessica L. Gronsbell
Jianhui Gao
Yaqi Shi
Z. McCaw
David Cheng
57
0
0
29 Nov 2024
L3Ms -- Lagrange Large Language Models
L3Ms -- Lagrange Large Language Models
Guneet S. Dhillon
Xingjian Shi
Yee Whye Teh
Alex Smola
67
0
0
28 Oct 2024
Enhancing Safety in Reinforcement Learning with Human Feedback via Rectified Policy Optimization
Enhancing Safety in Reinforcement Learning with Human Feedback via Rectified Policy Optimization
Xiyue Peng
Hengquan Guo
Jiawei Zhang
Dongqing Zou
Ziyu Shao
Honghao Wei
Xin Liu
34
0
0
25 Oct 2024
Enhancing Multimodal Medical Image Classification using Cross-Graph Modal Contrastive Learning
Enhancing Multimodal Medical Image Classification using Cross-Graph Modal Contrastive Learning
Jun-En Ding
Chien-Chin Hsu
Feng Liu
Shuqiang Wang
Feng Liu
42
0
0
23 Oct 2024
DeLLiriuM: A large language model for delirium prediction in the ICU
  using structured EHR
DeLLiriuM: A large language model for delirium prediction in the ICU using structured EHR
Miguel Contreras
Sumit Kapoor
Jiaqing Zhang
Andrea Davidson
Yuanfang Ren
Ziyuan Guan
T. Ozrazgat-Baslanti
Subhash Nerella
A. Bihorac
Parisa Rashidi
27
1
0
22 Oct 2024
Fine-tuning foundational models to code diagnoses from veterinary health
  records
Fine-tuning foundational models to code diagnoses from veterinary health records
Mayla R. Boguslav
Adam Kiehl
David Kott
G. Joseph Strecker
Tracy Webb
Nadia Saklou
Terri Ward
Michael Kirby
LM&MA
20
0
0
19 Oct 2024
What's New in My Data? Novelty Exploration via Contrastive Generation
What's New in My Data? Novelty Exploration via Contrastive Generation
Masaru Isonuma
Ivan Titov
23
0
0
18 Oct 2024
Disease Entity Recognition and Normalization is Improved with Large
  Language Model Derived Synthetic Normalized Mentions
Disease Entity Recognition and Normalization is Improved with Large Language Model Derived Synthetic Normalized Mentions
Kuleen Sasse
Shinjitha Vadlakonda
Richard Kennedy
J. D. Osborne
AI4CE
22
0
0
10 Oct 2024
Bridging Today and the Future of Humanity: AI Safety in 2024 and Beyond
Bridging Today and the Future of Humanity: AI Safety in 2024 and Beyond
Shanshan Han
73
1
0
09 Oct 2024
Reasoning-Enhanced Healthcare Predictions with Knowledge Graph Community Retrieval
Reasoning-Enhanced Healthcare Predictions with Knowledge Graph Community Retrieval
Pengcheng Jiang
Cao Xiao
Minhao Jiang
Parminder Bhatia
Taha A. Kass-Hout
Jimeng Sun
Jiawei Han
RALM
AI4MH
43
4
0
06 Oct 2024
HealthQ: Unveiling Questioning Capabilities of LLM Chains in Healthcare Conversations
HealthQ: Unveiling Questioning Capabilities of LLM Chains in Healthcare Conversations
Ziyu Wang
Hao Li
Di Huang
Amir M. Rahmani
Chae-Won Shin
Amir M. Rahmani
LM&MA
40
9
0
28 Sep 2024
Using LLM for Real-Time Transcription and Summarization of
  Doctor-Patient Interactions into ePuskesmas in Indonesia
Using LLM for Real-Time Transcription and Summarization of Doctor-Patient Interactions into ePuskesmas in Indonesia
Azmul Asmar Irfan
Nur Ahmad Khatim
Mansur M. Arief
25
0
0
25 Sep 2024
Lessons Learned on Information Retrieval in Electronic Health Records: A
  Comparison of Embedding Models and Pooling Strategies
Lessons Learned on Information Retrieval in Electronic Health Records: A Comparison of Embedding Models and Pooling Strategies
Skatje Myers
Timothy A. Miller
Yanjun Gao
M. Churpek
Anoop Mayampurath
Dmitriy Dligach
Majid Afshar
15
3
0
23 Sep 2024
Using Large Language Models to Generate Clinical Trial Tables and
  Figures
Using Large Language Models to Generate Clinical Trial Tables and Figures
Yumeng Yang
Peter Krusche
Kristyn Pantoja
Cheng Shi
Ethan B. Ludmir
Kirk Roberts
Gen Zhu
LM&MA
LMTD
30
0
0
18 Sep 2024
Evaluating the Effectiveness of Large Language Models in Representing
  and Understanding Movement Trajectories
Evaluating the Effectiveness of Large Language Models in Representing and Understanding Movement Trajectories
Yuhan Ji
Song Gao
22
0
0
31 Aug 2024
A Survey for Large Language Models in Biomedicine
A Survey for Large Language Models in Biomedicine
Chong Wang
Mengyao Li
Junjun He
Zhongruo Wang
Erfan Darzi
...
Yi Yu
Pietro Liò
Tianyun Wang
Yu Guang Wang
Yiqing Shen
LM&MA
34
9
0
29 Aug 2024
Deep Transfer Learning for Kidney Cancer Diagnosis
Deep Transfer Learning for Kidney Cancer Diagnosis
Yassine Habchi
Hamza Kheddar
Yassine Himeur
A. Boukabou
Shadi Atalla
W. Mansoor
Hussain Al-Ahmad
40
5
0
08 Aug 2024
XMainframe: A Large Language Model for Mainframe Modernization
XMainframe: A Large Language Model for Mainframe Modernization
Anh T. V. Dau
Hieu Trung Dao
Anh Tuan Nguyen
Hieu Trung Tran
Phong X. Nguyen
Nghi D. Q. Bui
27
1
0
05 Aug 2024
UF-HOBI at "Discharge Me!": A Hybrid Solution for Discharge Summary
  Generation Through Prompt-based Tuning of GatorTronGPT Models
UF-HOBI at "Discharge Me!": A Hybrid Solution for Discharge Summary Generation Through Prompt-based Tuning of GatorTronGPT Models
Mengxian Lyu
C.A.I. Peng
Daniel Paredes
Ziyi Chen
Aokun Chen
Jiang Bian
Yonghui Wu
19
2
0
22 Jul 2024
Evaluating Large Language Models for Anxiety and Depression
  Classification using Counseling and Psychotherapy Transcripts
Evaluating Large Language Models for Anxiety and Depression Classification using Counseling and Psychotherapy Transcripts
Junwei Sun
Siqi Ma
Yiran Fan
Peter Washington
AI4MH
49
0
0
18 Jul 2024
Performance Evaluation of Lightweight Open-source Large Language Models
  in Pediatric Consultations: A Comparative Analysis
Performance Evaluation of Lightweight Open-source Large Language Models in Pediatric Consultations: A Comparative Analysis
Qiuhong Wei
Ying Cui
Mengwei Ding
Yanqin Wang
Lingling Xiang
Zhengxiong Yao
Ceran Chen
Ying Long
Zhezhen Jin
Ximing Xu
ELM
LM&MA
AI4MH
36
0
0
16 Jul 2024
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