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GatorTron: A Large Clinical Language Model to Unlock Patient Information
  from Unstructured Electronic Health Records
v1v2v3 (latest)

GatorTron: A Large Clinical Language Model to Unlock Patient Information from Unstructured Electronic Health Records

npj Digital Medicine (NDM), 2022
2 February 2022
Xi Yang
Aokun Chen
Nima M. Pournejatian
Hoo-Chang Shin
Kaleb E. Smith
Christopher Parisien
Colin B. Compas
Cheryl Martin
Mona G. Flores
Ying Zhang
Tanja Magoc
C. Harle
Gloria P. Lipori
Duane A. Mitchell
W. Hogan
E. Shenkman
Jiang Bian
Yonghui Wu
    AI4MHLM&MA
ArXiv (abs)PDFHTML

Papers citing "GatorTron: A Large Clinical Language Model to Unlock Patient Information from Unstructured Electronic Health Records"

50 / 182 papers shown
Title
Generalist Foundation Models Are Not Clinical Enough for Hospital Operations
Generalist Foundation Models Are Not Clinical Enough for Hospital Operations
L. Jiang
Angelica Chen
Xu Han
Xujin C. Liu
Radhika Dua
...
Jaden Stryker
Jin Vivian Lee
Yindalon Aphinyanaphongs
K. Cho
Eric Oermann
LM&MAAI4MH
306
1
0
17 Nov 2025
BiPETE: A Bi-Positional Embedding Transformer Encoder for Risk Assessment of Alcohol and Substance Use Disorder with Electronic Health Records
BiPETE: A Bi-Positional Embedding Transformer Encoder for Risk Assessment of Alcohol and Substance Use Disorder with Electronic Health Records
Daniel S. Lee
Mayra S. Haedo-Cruz
Chen Jiang
Oshin Miranda
LiRong Wang
44
0
0
07 Nov 2025
Generative AI for Healthcare: Fundamentals, Challenges, and Perspectives
Generative AI for Healthcare: Fundamentals, Challenges, and Perspectives
Gang Chen
Changshuo Liu
Gene Anne Ooi
Marcus Tan
Zhongle Xie
Jianwei Yin
J. Yip
Wenqiao Zhang
Jiaqi Zhu
Beng Chin Ooi
LM&MA
237
0
0
28 Oct 2025
Investigating LLM Capabilities on Long Context Comprehension for Medical Question Answering
Investigating LLM Capabilities on Long Context Comprehension for Medical Question Answering
Feras AlMannaa
Talia Tseriotou
Jenny Chim
Maria Liakata
ELM
99
0
0
21 Oct 2025
TraceCoder: Towards Traceable ICD Coding via Multi-Source Knowledge Integration
TraceCoder: Towards Traceable ICD Coding via Multi-Source Knowledge Integration
Mucheng Ren
He Chen
Yuchen Yan
D. Hu
Jun Xu
Xian Zeng
71
0
0
17 Oct 2025
Serialized EHR make for good text representations
Serialized EHR make for good text representations
Zhirong Chou
Quan Qin
Shi Li
57
0
0
11 Oct 2025
PRISM-Consult: A Panel-of-Experts Architecture for Clinician-Aligned Diagnosis
PRISM-Consult: A Panel-of-Experts Architecture for Clinician-Aligned Diagnosis
Lionel Levine
John Santerre
Alexander S. Young
T. Barry Levine
Francis Campion
Majid Sarrafzadeh
59
0
0
01 Oct 2025
Expert-guided Clinical Text Augmentation via Query-Based Model Collaboration
Expert-guided Clinical Text Augmentation via Query-Based Model Collaboration
Dongkyu Cho
Miao Zhang
Rumi Chunara
LM&MAMedIm
80
0
0
25 Sep 2025
Advances in Large Language Models for Medicine
Advances in Large Language Models for Medicine
Zhiyu Kan
Wensheng Gan
Zhenlian Qi
Philip S. Yu
LM&MA
134
0
0
23 Sep 2025
A Study of Large Language Models for Patient Information Extraction: Model Architecture, Fine-Tuning Strategy, and Multi-task Instruction Tuning
A Study of Large Language Models for Patient Information Extraction: Model Architecture, Fine-Tuning Strategy, and Multi-task Instruction Tuning
Cheng Peng
Xinyu Dong
Mengxian Lyu
Daniel Paredes
Y. Zhang
Yonghui Wu
LM&MA
44
0
0
05 Sep 2025
Unified Supervision For Vision-Language Modeling in 3D Computed Tomography
Unified Supervision For Vision-Language Modeling in 3D Computed Tomography
Hao-Chih Lee
Zelong Liu
Hamza Ahmed
Spencer Kim
Sean Huver
Vishwesh Nath
Z. Fayad
T. Deyer
X. Mei
76
0
0
01 Sep 2025
Latent Factor Point Processes for Patient Representation in Electronic Health Records
Latent Factor Point Processes for Patient Representation in Electronic Health Records
Parker Knight
Doudou Zhou
Zongqi Xia
T. Cai
Junwei Lu
92
0
0
28 Aug 2025
Generative Foundation Model for Structured and Unstructured Electronic Health Records
Generative Foundation Model for Structured and Unstructured Electronic Health Records
Sonish Sivarajkumar
Hang Zhang
Yuelyu Ji
Maneesh Bilalpur
Xizhi Wu
Chenyu Li
Min Gu Kwak
Shyam Visweswaran
YanShan Wang
AI4TSLM&MAMedIm
84
0
0
22 Aug 2025
Exploring Efficiency Frontiers of Thinking Budget in Medical Reasoning: Scaling Laws between Computational Resources and Reasoning Quality
Exploring Efficiency Frontiers of Thinking Budget in Medical Reasoning: Scaling Laws between Computational Resources and Reasoning Quality
Ziqian Bi
Lu Chen
Junhao Song
Hongying Luo
Enze Ge
...
Jibin Guan
Joe Yeong
Yongzhi Xu
Peng Wang
Junfeng Hao
LRM
88
1
0
16 Aug 2025
Data-Efficient Biomedical In-Context Learning: A Diversity-Enhanced Submodular Perspective
Data-Efficient Biomedical In-Context Learning: A Diversity-Enhanced Submodular Perspective
Jun Wang
Zaifu Zhan
Qixin Zhang
Mingquan Lin
Meijia Song
Rui Zhang
90
1
0
11 Aug 2025
Benchmarking Foundation Models for Mitotic Figure Classification
Benchmarking Foundation Models for Mitotic Figure Classification
Jonas Ammeling
J. Ganz
Emely Rosbach
Ludwig Lausser
C. Bertram
Katharina Breininger
Marc Aubreville
OOD
96
1
0
06 Aug 2025
A Topic Modeling Analysis of Stigma Dimensions, Social, and Related Behavioral Circumstances in Clinical Notes Among Patients with HIV
A Topic Modeling Analysis of Stigma Dimensions, Social, and Related Behavioral Circumstances in Clinical Notes Among Patients with HIV
Ziyi Chen
Yiyang Liu
M. Prosperi
Krishna Vaddiparti
Robert L Cook
Jiang Bian
Yi Guo
Yonghui Wu
80
0
0
10 Jun 2025
Reinforcement Learning from Human Feedback with High-Confidence Safety Constraints
Yaswanth Chittepu
Blossom Metevier
Will Schwarzer
Austin Hoag
S. Niekum
Philip S Thomas
144
0
0
09 Jun 2025
AI Agents for Conversational Patient Triage: Preliminary Simulation-Based Evaluation with Real-World EHR Data
AI Agents for Conversational Patient Triage: Preliminary Simulation-Based Evaluation with Real-World EHR Data
Sina Rashidian
Nan Li
Jonathan Amar
Jong Ha Lee
Sam Pugh
Eric Yang
Geoff Masterson
Myoung Cha
Yugang Jia
Akhil Vaid
143
0
0
04 Jun 2025
Unraveling Spatio-Temporal Foundation Models via the Pipeline Lens: A Comprehensive Review
Unraveling Spatio-Temporal Foundation Models via the Pipeline Lens: A Comprehensive Review
Yuchen Fang
Hao Miao
Yuxuan Liang
Liwei Deng
Yue Cui
...
Yan Zhao
T. Pedersen
Christian S. Jensen
Xiaofang Zhou
Kai Zheng
AI4TSAI4CE
196
5
0
02 Jun 2025
Scaling Up Biomedical Vision-Language Models: Fine-Tuning, Instruction Tuning, and Multi-Modal Learning
Cheng Peng
Kai Zhang
Mengxian Lyu
Hongfang Liu
Lichao Sun
Yonghui Wu
LM&MAMedImVLM
399
2
0
23 May 2025
Will Large Language Models Transform Clinical Prediction?
Will Large Language Models Transform Clinical Prediction?Diagnostic and Prognostic Research (DPR), 2025
Yusuf Yildiz
Goran Nenadic
M. Jani
David A. Jenkins
LM&MAAI4MHELM
368
0
0
23 May 2025
Foundation Models for Geospatial Reasoning: Assessing Capabilities of Large Language Models in Understanding Geometries and Topological Spatial Relations
Foundation Models for Geospatial Reasoning: Assessing Capabilities of Large Language Models in Understanding Geometries and Topological Spatial RelationsInternational Journal of Geographical Information Science (IJGIS), 2025
Yuhan Ji
Song Gao
Ying Nie
Ivan Majic
K. Janowicz
ReLMLRM
335
13
0
22 May 2025
FoMoH: A clinically meaningful foundation model evaluation for structured electronic health records
FoMoH: A clinically meaningful foundation model evaluation for structured electronic health records
Chao Pang
Vincent Jeanselme
Young Sang Choi
Xinzhuo Jiang
Zilin Jing
...
Yuta Kobayashi
Yanwei Li
Florent Pollet
Karthik Natarajan
Shalmali Joshi
429
0
0
22 May 2025
NeuroGen: Neural Network Parameter Generation via Large Language Models
NeuroGen: Neural Network Parameter Generation via Large Language Models
Jiaqi Wang
Yusen Zhang
Xi Li
293
0
0
18 May 2025
Interpretable graph-based models on multimodal biomedical data integration: A technical review and benchmarking
Interpretable graph-based models on multimodal biomedical data integration: A technical review and benchmarking
Alireza Sadeghi
F. Hajati
A. Argha
Nigel H Lovell
Min Yang
Hamid Alinejad-Rokny
288
0
0
03 May 2025
Aligning Large Language Models with Healthcare Stakeholders: A Pathway to Trustworthy AI Integration
Aligning Large Language Models with Healthcare Stakeholders: A Pathway to Trustworthy AI Integration
Kexin Ding
Mu Zhou
Akshay Chaudhari
Shaoting Zhang
Dimitris N. Metaxas
LM&MA
191
0
0
02 May 2025
BRIDGE: Benchmarking Large Language Models for Understanding Real-world Clinical Practice Text
BRIDGE: Benchmarking Large Language Models for Understanding Real-world Clinical Practice Text
Jiageng Wu
Bowen Gu
Ren Zhou
Kevin Xie
Doug Snyder
...
Siyang Song
Jonathan H. Chen
Santiago Romero-Brufau
K. J. Lin
Jie Yang
LM&MAELM
378
8
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28 Apr 2025
Adaptive Helpfulness-Harmlessness Alignment with Preference Vectors
Adaptive Helpfulness-Harmlessness Alignment with Preference Vectors
Ren-Wei Liang
Chin-Ting Hsu
Chan-Hung Yu
Saransh Agrawal
Shih-Cheng Huang
Shang-Tse Chen
Kuan-Hao Huang
Shao-Hua Sun
266
0
0
27 Apr 2025
EMRModel: A Large Language Model for Extracting Medical Consultation Dialogues into Structured Medical Records
EMRModel: A Large Language Model for Extracting Medical Consultation Dialogues into Structured Medical Records
Shuguang Zhao
Qiangzhong Feng
Zhiyang He
Peipei Sun
Yingying Wang
...
Xiaoliang Lu
Mei Cheng
Xinyue Wu
Yanyan Wang
Wei Liang
LM&MA
126
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0
23 Apr 2025
Accelerating Clinical NLP at Scale with a Hybrid Framework with Reduced GPU Demands: A Case Study in Dementia Identification
Accelerating Clinical NLP at Scale with a Hybrid Framework with Reduced GPU Demands: A Case Study in Dementia Identification
Jianlin Shi
Qiwei Gan
Elizabeth Hanchrow
Annie Bowles
John Stanley
Adam P. Bress
Jordana B. Cohen
Patrick R. Alba
136
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Semantically Encoding Activity Labels for Context-Aware Human Activity Recognition
Semantically Encoding Activity Labels for Context-Aware Human Activity RecognitionAnnual IEEE International Conference on Pervasive Computing and Communications (PerCom), 2025
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Guanyi Mou
Emmanuel O. Agu
Kyumin Lee
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ChronoFormer: Time-Aware Transformer Architectures for Structured Clinical Event Modeling
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186
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New care pathways for supporting transitional care from hospitals to home using AI and personalized digital assistance
New care pathways for supporting transitional care from hospitals to home using AI and personalized digital assistanceScientific Reports (Sci Rep), 2025
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T. Cioara
Roberta Bevilacqua
Federico Barbarossa
Terje Grimstad
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Arnor Solberg
Lars Thomas Boye
Ovidiu Anchidin
Ancuta Nemes
Camilla Gabrielsen
177
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Patients Speak, AI Listens: LLM-based Analysis of Online Reviews Uncovers Key Drivers for Urgent Care Satisfaction
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Xiaoran Xu
Zhaoqian Xue
Chi Zhang
Jhonatan Medri
Junjie Xiong
Jiayan Zhou
Jin Jin
Zelong Li
Siyuan Ma
Jinkui Chi
154
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26 Mar 2025
CALLM: Understanding Cancer Survivors' Emotions and Intervention Opportunities via Mobile Diaries and Context-Aware Language Models
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Katharine E. Daniel
Laura E. Barnes
Philip I. Chow
118
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Nathan Parker
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Evan W. Davis
Jennifer B. Permuth
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Yasin Yilmaz
Ghulam Rasool
145
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Fine-grained Alignment of Large Language Models for General Medication Recommendation without Overprescription
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Chenxiao Fan
Chongming Gao
Zheng Wang
Xiangnan He
Chongming Gao
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Fuli Feng
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242
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Cancer Type, Stage and Prognosis Assessment from Pathology Reports using LLMsScientific Reports (Sci Rep), 2025
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Jacob Rosenthal
Yoav Artzi
David J. Pisapia
B. Liechty
M. Sabuncu
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245
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An evaluation of DeepSeek Models in Biomedical Natural Language Processing
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Shuang Zhou
Huixue Zhou
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