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Cell Detection with Star-convex Polygons

9 June 2018

Papers citing "Cell Detection with Star-convex Polygons"

50 / 142 papers shown

Title
DistNet2D: Leveraging long-range temporal information for efficient segmentation and tracking J. Ollion Martin Maliet Caroline Giuglaris Elise Vacher Maxime Deforet 53 5 0 30 Oct 2023
Multi-stream Cell Segmentation with Low-level Cues for Multi-modality Images Wei Lou Xinyi Yu Chenyu Liu Xiang Wan Guanbin Li Siqi Liu Haofeng Li 85 8 0 22 Oct 2023
Unsupervised Learning of Object-Centric Embeddings for Cell Instance Segmentation in Microscopy Images Steffen Wolf Manan Lalit Henry Westmacott Katie McDole Jan Funke OCL 51 6 0 12 Oct 2023
Cell Tracking-by-detection using Elliptical Bounding Boxes Lucas N. Kirsten Cláudio R. Jung 50 1 0 07 Oct 2023
AI-based automated active learning for discovery of hidden dynamic processes: A use case in light microscopy Nils Friederich Angelo Jovin Yamachui Sitcheu Oliver Neumann Süheyla Eroglu-Kayikçi Roshan Prizak Lennart Hilbert Ralf Mikut 61 2 0 05 Oct 2023
Combining Datasets with Different Label Sets for Improved Nucleus Segmentation and Classification Amruta Parulekar Utkarsh Kanwat R. Gupta Medha Chippa Thomas Jacob Tripti Bameta Swapnil Rane Amit Sethi AI4CE 70 1 0 05 Oct 2023
Uncertainty Estimation in Instance Segmentation with Star-convex Shapes Qasim M. K. Siddiqui Sebastian Starke Peter Steinbach UQCV 104 0 0 19 Sep 2023
Semi-supervised Instance Segmentation with a Learned Shape Prior Long Chen Weiwen Zhang Yuli Wu M. Strauch Dorit Merhof 3DPC 60 8 0 09 Sep 2023
SegmentAnything helps microscopy images based automatic and quantitative organoid detection and analysis Xiaodan Xing Chunling Tang Yunzhe Guo Nicholas A Kurniawan Guang Yang 16 4 0 08 Sep 2023
DARC: Distribution-Aware Re-Coloring Model for Generalizable Nucleus Segmentation Shengcong Chen Changxing Ding Dacheng Tao Hao Chen 77 1 0 01 Sep 2023
The TYC Dataset for Understanding Instance-Level Semantics and Motions of Cells in Microstructures Christoph Reich Tim Prangemeier Heinz Koeppl 55 0 0 23 Aug 2023
The Multi-modality Cell Segmentation Challenge: Towards Universal Solutions Jun Ma Ronald Xie Shamini Ayyadhury Cheng Ge Anubha Gupta ... Beth A. Cimini C. Zuo Oscar Bruck Gary D. Bader Bohui Wang VLM 76 43 0 10 Aug 2023
Large-Scale Multi-Hypotheses Cell Tracking Using Ultrametric Contours Maps Jordão Bragantini Merlin Lange Loic A. Royer 3DV 56 13 0 08 Aug 2023
Enhancing Nucleus Segmentation with HARU-Net: A Hybrid Attention Based Residual U-Blocks Network Junzhou Chen Qian Huang Yuling Chen Linyi Qian Che-Sheng Yu 44 2 0 07 Aug 2023
Focus on Content not Noise: Improving Image Generation for Nuclei Segmentation by Suppressing Steganography in CycleGAN Jonas Utz Tobias Weise M. Schlereth Fabian Wagner Mareike Thies Mingxuan Gu S. Uderhardt Katharina Breininger MedIm 96 2 0 03 Aug 2023
AnyStar: Domain randomized universal star-convex 3D instance segmentation Neel Dey S. M. Abulnaga Benjamin Billot Esra Abaci Turk P. E. Grant Adrian Dalca Polina Golland MedIm 88 14 0 13 Jul 2023
Automated identification and quantification of myocardial inflammatory infiltration in digital histological images to diagnose myocarditis Yanyun Liu Xiumeng Hua Shouping Zhu Congrui Wang Xiao Chen Yu Shi Jiangping Song Weihua Zhou 28 0 0 03 Jul 2023
The State of Applying Artificial Intelligence to Tissue Imaging for Cancer Research and Early Detection Michael Robben Amir Hajighasemi M. Nasr Jai Prakesh Veerla Anne M. Alsup ... Kelli Fowlds Parisa Boodaghi Malidarreh Paul Koomey Jillur Rahman Saurav Jacob M. Luber AI4CE 56 5 0 29 Jun 2023
NCIS: Deep Color Gradient Maps Regression and Three-Class Pixel Classification for Enhanced Neuronal Cell Instance Segmentation in Nissl-Stained Histological Images V. Vadori A. Peruffo Jean-Marie Graic L. Finos L. Corain Enrico Grisan 26 2 0 27 Jun 2023
CellViT: Vision Transformers for Precise Cell Segmentation and Classification Fabian Horst Moritz Rempe Lukas Heine C. Seibold J. Keyl ... S. Ugurel J. Siveke Barbara Grünwald Jan Egger Jens Kleesiek MedIm ViT 80 109 0 27 Jun 2023
DAGrid: Directed Accumulator Grid Hang Zhang Renjiu Hu Xiang Chen Rongguang Wang Jinwei Zhang Jiahao Nick Li MedIm 70 0 0 05 Jun 2023
PhagoStat a scalable and interpretable end to end framework for efficient quantification of cell phagocytosis in neurodegenerative disease studies Mehdi Ounissi Morwena Latouche Daniel Racoceanu 55 2 0 26 Apr 2023
Automated Whole Slide Imaging for Label-Free Histology using Photon Absorption Remote Sensing Microscopy James E. D. Tweel B. Ecclestone M. Boktor D. Dinakaran J. Mackey P. H. Reza 47 9 0 26 Apr 2023
Point-supervised Single-cell Segmentation via Collaborative Knowledge Sharing Ji Yu 79 5 0 20 Apr 2023
An Instance Segmentation Dataset of Yeast Cells in Microstructures Christoph Reich Tim Prangemeier André O. Franccani Heinz Koeppl 118 4 0 15 Apr 2023
Advanced Multi-Microscopic Views Cell Semi-supervised Segmentation Fang Hu Xuexue Sun Ke Qing Fenxi Xiao Zhi Wang Xiaolu Fan 32 0 0 21 Mar 2023
DeDA: Deep Directed Accumulator Hang Zhang Rongguang Wang Renjiu Hu Jinwei Zhang Jiahao Nick Li MedIm 72 5 0 15 Mar 2023
CoNIC Challenge: Pushing the Frontiers of Nuclear Detection, Segmentation, Classification and Counting S. Graham Q. Vu Mostafa Jahanifar Martin Weigert Uwe Schmidt ... Tianyi Miao David R. J. Snead S. Raza F. Minhas Nasir M. Rajpoot 96 37 0 11 Mar 2023
BioImageLoader: Easy Handling of Bioimage Datasets for Machine Learning Seon U Lim Xingjiang Zhang E. Beaurepaire A. Chessel LM&Ro LM&MA VLM 24 1 0 02 Mar 2023
Kartezio: Evolutionary Design of Explainable Pipelines for Biomedical Image Analysis Kévin Cortacero Brienne A. McKenzie S. Muller Roxana Khazen Fanny Lafouresse ... H. Luga Oskar Staufer Michael L. Dustin S. Valitutti Sylvain Cussat-Blanc MedIm 88 17 0 28 Feb 2023
MesoGraph: Automatic Profiling of Malignant Mesothelioma Subtypes from Histological Images Mark Eastwood H. Sailem Silviu Tudor Marc Xiaohong Gao J. Offman ... W. Cookson M. Moffatt S. Popat F. Minhas J. Robertus 75 1 0 23 Feb 2023
Structure Embedded Nucleus Classification for Histopathology Images Wei Lou Xiang Wan Guanbin Li X. Lou Chenghang Li Feng Gao Haofeng Li 74 10 0 22 Feb 2023
Understanding metric-related pitfalls in image analysis validation Annika Reinke M. Tizabi Michael Baumgartner Matthias Eisenmann Doreen Heckmann-Notzel ... Gaël Varoquaux Manuel Wiesenfarth Ziv R. Yaniv Paul F. Jäger Lena Maier-Hein 96 58 0 03 Feb 2023
Learning with minimal effort: leveraging in silico labeling for cell and nucleus segmentation Thomas Bonte Maxence Philbert Emeline Coleno E. Bertrand Arthur Imbert Thomas Walter VLM 34 1 0 10 Jan 2023
Segmentation based tracking of cells in 2D+time microscopy images of macrophages Seol Ah Park Tamara Sipka Z. Krivá G. Lutfalla M. Nguyen-Chi K. Mikula 21 3 0 02 Jan 2023
CellTranspose: Few-shot Domain Adaptation for Cellular Instance Segmentation M. Keaton Ram J. Zaveri Gianfranco Doretto 63 14 0 28 Dec 2022
MEDIAR: Harmony of Data-Centric and Model-Centric for Multi-Modality Microscopy Gihun Lee Sangmook Kim Joonkee Kim Se-Young Yun MedIm 54 20 0 07 Dec 2022
μSplit: efficient image decomposition for microscopy data Ashesh Ashesh Alexander Krull M. D. Sante F. Pasqualini Florian Jug 70 4 0 23 Nov 2022
Automatic Quantitative Analysis of Brain Organoids via Deep Learning Jingli Shi 13 1 0 01 Nov 2022
HoechstGAN: Virtual Lymphocyte Staining Using Generative Adversarial Networks Georg Wolflein I. Um David J. Harrison Ognjen Arandjelovic MedIm 96 4 0 13 Oct 2022
MMV_Im2Im: An Open Source Microscopy Machine Vision Toolbox for Image-to-Image Transformation Justin Sonneck Jianxu Chen VLM MedIm 89 5 0 06 Sep 2022
Nuclei & Glands Instance Segmentation in Histology Images: A Narrative Review Esha Sadia Nasir Arshi Parvaiz M. Fraz 62 16 0 26 Aug 2022
Look in Different Views: Multi-Scheme Regression Guided Cell Instance Segmentation Menghao Li W. Feng Shuchang Lyu Lijiang Chen Qi Zhao 59 0 0 17 Aug 2022
Image Translation Based Nuclei Segmentation for Immunohistochemistry Images Roger Trullo Q. Bui Q. Tang R. Olfati-Saber MedIm 66 5 0 12 Aug 2022
Weakly Supervised Deep Instance Nuclei Detection using Points Annotation in 3D Cardiovascular Immunofluorescent Images Nazanin Moradinasab Yash Sharma Laura S. Shankman Gary K. Owens Donald E. Brown 49 1 0 29 Jul 2022
Metrics reloaded: Recommendations for image analysis validation Lena Maier-Hein Annika Reinke Patrick Godau M. Tizabi Florian Buettner ... Aleksei Tiulpin Sotirios A. Tsaftaris Ben Van Calster Gaël Varoquaux Paul F. Jäger 129 237 0 03 Jun 2022
H-EMD: A Hierarchical Earth Mover's Distance Method for Instance Segmentation Peixian Liang Yizhe Zhang Yifan Ding Jianxu Chen C. S. Madukoma Tim Weningerc J. Shrout Danny Chen 30 9 0 02 Jun 2022
ConsInstancy: Learning Instance Representations for Semi-Supervised Panoptic Segmentation of Concrete Aggregate Particles Max Coenen T. Schack D. Beyer Christian Heipke M. Haist ISeg 114 13 0 10 Apr 2022
EfficientCellSeg: Efficient Volumetric Cell Segmentation Using Context Aware Pseudocoloring Royden Wagner K. Rohr MedIm 48 4 0 06 Apr 2022
Panoptic segmentation with highly imbalanced semantic labels J. L. Rumberger Elias Baumann Peter Hirsch Andrew Janowczyk Inti Zlobec Dagmar Kainmueller 63 7 0 03 Mar 2022