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BioBERT: a pre-trained biomedical language representation model for biomedical text mining

25 January 2019

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Papers citing "BioBERT: a pre-trained biomedical language representation model for biomedical text mining"

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COPE: Chain-Of-Thought Prediction Engine for Open-Source Large Language Model Based Stroke Outcome Prediction from Clinical Notes Yongkai Liu Helena Feng Bin Jiang Yixin Wang Max Wintermark ... M. Moseley Maarten Lansberg G. Albers J. Heit Greg Zaharchuk ELM 133 0 0 02 Dec 2025
Radiologist Copilot: An Agentic Assistant with Orchestrated Tools for Radiology Reporting with Quality Control Yongrui Yu Zhongzhen Huang Linjie Mu Shaoting Zhang Xiaofan Zhang MedIm 172 0 0 02 Dec 2025
OntoMetric: An Ontology-Guided Framework for Automated ESG Knowledge Graph Construction Mingqin Yu Fethi Rabhi Boming Xia Zhengyi Yang Felix Tan Qinghua Lu 16 0 0 01 Dec 2025
Text Mining Analysis of Symptom Patterns in Medical Chatbot Conversations Hamed Razavi 8 0 0 30 Nov 2025
Comparative Analysis of 47 Context-Based Question Answer Models Across 8 Diverse Datasets Muhammad Muneeb David B. Ascher Ahsan Baidar Bakht 32 0 0 29 Nov 2025
Mirror, Mirror on the Wall -- Which is the Best Model of Them All? Dina Sayed Heiko Schuldt 24 0 0 25 Nov 2025
Winning with Less for Low Resource Languages: Advantage of Cross-Lingual English_Persian Argument Mining Model over LLM Augmentation Ali Jahan Masood Ghayoomi Annette Hautli-Janisz 44 0 0 25 Nov 2025
A Systematic Analysis of Large Language Models with RAG-enabled Dynamic Prompting for Medical Error Detection and Correction Farzad Ahmed Joniel Augustine Jerome Meliha Yetisgen Özlem Uzuner 108 0 0 25 Nov 2025
Comparative Analysis of LoRA-Adapted Embedding Models for Clinical Cardiology Text Representation Richard J. Young Alice M. Matthews 80 0 0 24 Nov 2025
$HuggingR$^{4}$: A Progressive Reasoning Framework for Discovering Optimal Model Companions$ HuggingR $^{4}$ : A Progressive Reasoning Framework for Discovering Optimal Model Companions Shaoyin Ma Jie Song Huiqiong Wang Li Sun Mingli Song LLMAG 277 0 0 24 Nov 2025
Vision Token Masking Alone Cannot Prevent PHI Leakage in Medical Document OCR: A Systematic Evaluation Richard J. Young AAML 56 0 0 23 Nov 2025
Dual-Path Knowledge-Augmented Contrastive Alignment Network for Spatially Resolved Transcriptomics Wei Zhang Jiajun Chu Xinci Liu Chen Tong X. Li 58 0 0 21 Nov 2025
Utilizing Large Language Models for Zero-Shot Medical Ontology Extension from Clinical Notes Guanchen Wu Yuzhang Xie Huanwei Wu Zhe He Hui Shao Xiao Hu Carl Yang 116 0 0 20 Nov 2025
OEMA: Ontology-Enhanced Multi-Agent Collaboration Framework for Zero-Shot Clinical Named Entity Recognition Xinli Tao Xin Dong Xuezhong Zhou 137 0 0 19 Nov 2025
N-GLARE: An Non-Generative Latent Representation-Efficient LLM Safety Evaluator Zheyu Lin Jirui Yang Hengqi Guo Yubing Bao Yao Guan 117 0 0 18 Nov 2025
NeuroLex: A Lightweight Domain Language Model for EEG Report Understanding and Generation Kang Yin Hye-Bin Shin 112 0 0 17 Nov 2025
ClinStructor: AI-Powered Structuring of Unstructured Clinical Texts Karthikeyan K Raghuveer Thirukovalluru David Edwin Carlson 125 1 0 14 Nov 2025
CC30k: A Citation Contexts Dataset for Reproducibility-Oriented Sentiment Analysis Rochana R. Obadage Sarah M. Rajtmajer Jian Wu 80 0 0 11 Nov 2025
BiCA: Effective Biomedical Dense Retrieval with Citation-Aware Hard Negatives Aarush Sinha Pavan Kumar S Roshan Balaji Nirav Pravinbhai Bhatt 72 0 0 11 Nov 2025
TCSA-UDA: Text-Driven Cross-Semantic Alignment for Unsupervised Domain Adaptation in Medical Image Segmentation Lalit Maurya Honghai Liu Reyer Zwiggelaar 104 0 0 08 Nov 2025
Retrieval-Augmented Generation in Medicine: A Scoping Review of Technical Implementations, Clinical Applications, and Ethical Considerations Rui Yang Matthew Yu Heng Wong Huitao Li Xin Li Wentao Zhu ... J. Ong Douglas Teodoro Chuan Hong Daniel Ting Nan Liu 3DV 269 0 0 08 Nov 2025
ManufactuBERT: Efficient Continual Pretraining for Manufacturing Robin Armingaud Romaric Besançon 68 0 0 07 Nov 2025
RAGSmith: A Framework for Finding the Optimal Composition of Retrieval-Augmented Generation Methods Across Datasets Muhammed Yusuf Kartal Suha Kagan Kose Korhan Sevinç Burak Aktas 90 0 0 03 Nov 2025
AraFinNews: Arabic Financial Summarisation with Domain-Adapted LLMs Mo El-Haj Paul Rayson AIFin 386 0 0 03 Nov 2025
VesSAM: Efficient Multi-Prompting for Segmenting Complex Vessel Suzhong Fu Rui Sun X. Ding Jingqi Dong Y. Yang ... Min Chang Jordan Ren Delin Deng Angelica I Aviles-Rivero Shuguang Cui Zhen Li 69 0 0 02 Nov 2025
Fine-Tuning DialoGPT on Common Diseases in Rural Nepal for Medical Conversations Birat Poudel Satyam Ghimire Er. Prakash Chandra Prasad LM&MA 343 0 0 01 Nov 2025
Multilingual BERT language model for medical tasks: Evaluation on domain-specific adaptation and cross-linguality Yinghao Luo Lang Zhou Amrish Jhingoer Klaske Vliegenthart--Jongbloed Carlijn Jordans Ben Werkhoven T. Seinen E. V. Mulligen Casper Rokx Yunlei Li LM&MA 179 0 0 31 Oct 2025
Evontree: Ontology Rule-Guided Self-Evolution of Large Language Models Mingchen Tu Zhiqiang Liu Juan Li Liangyurui Liu Junjie Wang Lei Liang W. Zhang 89 0 0 30 Oct 2025
Bayesian Network Fusion of Large Language Models for Sentiment Analysis R. Amirzadeh D. Thiruvady Fatemeh Shiri 108 0 0 30 Oct 2025
Leveraging Hierarchical Organization for Medical Multi-document Summarization Yi-Li Hsu Katelyn X. Mei Lucy Lu Wang 158 0 0 27 Oct 2025
Low-Resource Dialect Adaptation of Large Language Models: A French Dialect Case-Study Eeham Khan Firas Saidani Owen Van Esbroeck Richard Khoury Leila Kosseim 132 0 0 26 Oct 2025
CLIN-LLM: A Safety-Constrained Hybrid Framework for Clinical Diagnosis and Treatment Generation Md. Mehedi Hasan Rafid Mostafiz Md. Abir Hossain Bikash Kumar Paul LM&MA 124 0 0 26 Oct 2025
PatenTEB: A Comprehensive Benchmark and Model Family for Patent Text Embedding Iliass Ayaou Denis Cavallucci 80 0 0 25 Oct 2025
Large Language Models Meet Text-Attributed Graphs: A Survey of Integration Frameworks and Applications Guangxin Su Hanchen Wang Jianwei Wang Wenjie Zhang Ying Zhang Jian Pei 240 1 0 24 Oct 2025
IMB: An Italian Medical Benchmark for Question Answering Antonio Romano Giuseppe Riccio Mariano Barone Marco Postiglione V. Moscato AI4MH 219 0 0 21 Oct 2025
From Retrieval to Generation: Unifying External and Parametric Knowledge for Medical Question Answering Lei Li Xiao Zhou Y. Zhang X. Wu RALM MedIm 147 0 0 21 Oct 2025
Multilingual Clinical NER for Diseases and Medications Recognition in Cardiology Texts using BERT EmbeddingsConference and Labs of the Evaluation Forum (CLEF), 2025 Manuela Danu George Marica C. Suciu Lucian Mihai Itu Oladimeji Farri 112 2 0 20 Oct 2025
MOSAIC: Masked Objective with Selective Adaptation for In-domain Contrastive Learning Vera Pavlova Mohammed Makhlouf CLL 143 0 0 19 Oct 2025
Predicting life satisfaction using machine learning and explainable AI Alif Elham Khan Mohammad Junayed Hasan Humayra Anjum Nabeel Mohammed Sifat Momen 76 16 0 18 Oct 2025
Advances in Pre-trained Language Models for Domain-Specific Text Classification: A Systematic ReviewACM Transactions on Intelligent Systems and Technology (TIST), 2025 Z. R. K. Rostam Gábor Kertész 124 1 0 18 Oct 2025
Adaptive Minds: Empowering Agents with LoRA-as-Tools Pavan C Shekar Ashwanth Krishnan AI4CE 60 0 0 17 Oct 2025
TACL: Threshold-Adaptive Curriculum Learning Strategy for Enhancing Medical Text Understanding Mucheng Ren Yucheng Yan He Chen D. Hu Jun Xu Xian Zeng 80 0 0 17 Oct 2025
Evaluating Prompting Strategies and Large Language Models in Systematic Literature Review Screening: Relevance and Task-Stage Classification Binglan Han Anuradha Mathrani Teo Susnjak 64 0 0 17 Oct 2025
Towards Automatic Evaluation and Selection of PHI De-identification Models via Multi-Agent Collaboration Guanchen Wu Zuhui Chen Yuzhang Xie Carl Yang LLMAG 88 1 0 17 Oct 2025
Generalist vs Specialist Time Series Foundation Models: Investigating Potential Emergent Behaviors in Assessing Human Health Using PPG Signals Saurabh Kataria Yi Wu Zhaoliang Chen Hyunjung Gloria Kwak Yuhao Xu ... C. Jabaley Tim Buchman Sivasubramanium V Bhavani Randall J Lee Xiao Hu AI4TS AI4MH LM&MA 180 0 0 16 Oct 2025
JEDA: Query-Free Clinical Order Search from Ambient Dialogues Praphul Singh Corey D Barrett Sumana Srivasta Amitabh Saikia Irfan Bulu Sri Gadde Krishnaram Kenthapadi 118 0 0 16 Oct 2025
Inferred global dense residue transition graphs from primary structure sequences enable protein interaction prediction via directed graph convolutional neural networks Islam A. Ebeid Haoteng Tang Pengfei Gu GNN 138 0 0 15 Oct 2025
Towards Human-Centric Intelligent Treatment Planning for Radiation Therapy Adnan Jafar Xun Jia 92 0 0 15 Oct 2025
Repurposing Annotation Guidelines to Instruct LLM Annotators: A Case StudyInternational Conference on Applications of Natural Language to Data Bases (NLDB), 2025 Kon Woo Kim Rezarta Islamaj Jin-Dong Kim Florian Boudin Akiko Aizawa 88 0 0 13 Oct 2025
GapDNER: A Gap-Aware Grid Tagging Model for Discontinuous Named Entity Recognition Yawen Yang Fukun Ma Shiao Meng Aiwei Liu Lijie Wen 88 0 0 13 Oct 2025